Rw2G027820

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010750
Physical Location & Seq
Forward (+)
44031576 .. 44032952
1377 bp
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UTR
Exon/CDS
Intron
Rw2G027820.1

Sequence Viewer

Length: 324 bp
ATGGAGGATGGCAAGGAGCCACGAGTGGAGCAGTCGGAAAAACCATCCGCAGAGGAGGAAGAGGTTTTAAAGAAAAAGTATGGTGGAATCATTCCGAAGAAACCACCACTGATTTCTAAGGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCGCTTGGAAAGCAAGGTGTTGAGAAGCCTAAAGGACCACTTGAAGCCCTTCGGCCAAAATTACAGCCTACACAACAGCAAACAAGATACAGAAAGTCTCCTTGTGCTCCATCCGAGGGCGAAGATGGAGGAGGTGCTCCCTCTGAGGACACAGCTGCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

5.34

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 17 - 85 1.6e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 2 cut(s) 265, 295
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 121, 191
AvaII GGWCC 2 cut(s) 121, 191
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 265, 295
BbvI GCAGC 1 cut(s) 298
BccI CCATC 4 cut(s) 2, 52, 274, 275
BcoDI GTCTC 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 121, 191
BmgT120I GGNCC 2 cut(s) 121, 191
BmiI GGNNCC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 13, 44, 266
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 68, 300
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 265, 295
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 265, 295
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 270
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 117, 300
BstF5I GGATG 3 cut(s) 13, 44, 266
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 155, 166
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 13, 44, 266
BtsIMutI CAGTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 121, 191
CviAII CATG 1 cut(s) 125
CviJI RGCY 6 cut(s) 19, 184, 203, 211, 223, 311
CviKI_1 RGCY 6 cut(s) 19, 184, 203, 211, 223, 311
DdeI CTNAG 2 cut(s) 117, 300
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 121, 191
FaeI CATG 1 cut(s) 128
FaiI YATR 2 cut(s) 81, 126
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 3 cut(s) 20, 31, 253
Fsp4HI GCNGC 1 cut(s) 312
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 211
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 87, 143
Hpy188I TCNGA 4 cut(s) 37, 96, 271, 301
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 166
HpyF3I CTNAG 2 cut(s) 117, 300
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 158
LmnI GCTCC 4 cut(s) 16, 28, 268, 298
Lsp1109I GCAGC 1 cut(s) 298
MaeII ACGT 1 cut(s) 130
MboII GAAGA 3 cut(s) 71, 109, 290
MhlI GDGCHC 2 cut(s) 265, 295
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 8 cut(s) 46, 49, 55, 265, 278, 281, 295, 307
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 155, 166
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 87, 143
PkrI GCNGC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 121, 191
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 121, 191
SduI GDGCHC 2 cut(s) 265, 295
SetI ASST 5 cut(s) 66, 133, 175, 292, 313
SinI GGWCC 2 cut(s) 121, 191
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 48
TaiI ACGT 1 cut(s) 133
TasI AATT 1 cut(s) 215
TfiI GAWTC 2 cut(s) 87, 143
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 114
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 121, 191
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.