FvH4_6g27690

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21356405 .. 21360136
3732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27690.t1

Sequence Viewer

Length: 1374 bp
ATGATGGTTTGTGGATTATCTACTAGGCTGTTGAACATATGCATATCATCATTCTGTAAAGCCCGGCTTTTGGGGAGAGCCGAAGCCGTTATTATTGATGGTATAAGATTAGGGGTGGTTCCGAATAGACACACTTACAATACTTTGCTTCATGCCTATTGTCAGTTTGTCGACATTGATGCTGCTTATTCGGTTGTCCATAGAATGAAAGAAGCTGGGATAAGTCCAGATGTTTGTACTTTCAATTCTTTGATATCCGGGGCCACCAGGAATCGGTTATTGTCTCGGTGCCTGGATTTGTTTGATGAAATGTTGCAAGAAGGTATACATCCTGATGTGTGGAGTTACAATATTTTGATGCATTGTTTCTTTAAGTTAGGGAAACCTGATGAAGCCAACCGAGTCTTCCAGGATATTTTACTTAGCGACCTCACTCCTCATGCAGCTACATATAACATAATGATTAATGGCCTTTGTAAAAATGGGTACACTGATCATGCTCTTATGTTATTTAGGAATTTACAACGTCACGGATTTGCTCCCACGCTAGTGACGTACAATATTATTATCAGTGGGCTATGCAAGGCACGTAGAGTGCGGCAAGCGAGGAAAATTCTACAGGACCTTGTAGAATCAGGTCATGTGCCAGATGCCATAACCTACACTACAGTTTTGAAGAGCTGCTTTAGGTCTAAGCAATACGACCACGGGCTTGAGATTATGTCAGAGATGAAGAGTAAAGGGTATACATTTGATGGCTTTGCATACTGCACTGTCATTGCTGCCTTACTTAAGACTGGAAGGATGGAAGGAGCAAATCTTTTCATGGAACAATTAATGGATAGTGGCATTGAAATGGACTTGGTGTCTTATAACAACTTACTTAATACACTTTGTAAAGATGGTAAGTTTGAAGCTGCCTATAAGTTGATGGATGAAATAGAGAATCGGGGCCTTTCGTGTGATAAGTATACTCATACAATCATGATTGATGGATTGTGTAAGGCGGGAAATATAGCTGGTGCTCTAAAACATTTACATTATATGAATATGATGGGATTCCATGATAACGTGGTTGCCTTAAATTGTCTGATTGATGGCTTGGGTAAAGCTGGTGAAATCGATCGTGCAATGGAATTGTACAATTTAATGGAGACTAGGGATTCTTTTACCTATGACTCCTTGGTGTTCAATCTTTGCAAGGCTGGAAGGTTCCTTTGTGCATCTAAGGTTATGATGAAATGTTTAAGAGATGGAATGTTATTACTCTACTCTACCAGGCGAGCACTCCTTAATGGTCTTCGTAGTATAGGGTTTACAAATGAAGCAAGAAAGCTTCGATCAAAAATTCAATTGGCTCGGCTGTTACGTTAA

Protein Analysis

458

Amino Acids

51.55

Weight (kDa)

8.7

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 12 - 55 4.8e-06 PPR repeat family
PPR_3 PF13812 36 - 86 9.3e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 38 - 70 3e-07 PPR repeat
PPR_2 PF13041 41 - 87 1.9e-13 PPR repeat family
TPR_24 PF23276 42 - 138 1.5e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 73 - 104 2.2e-06 PPR repeat
PPR_2 PF13041 76 - 125 1.5e-13 PPR repeat family
PPR PF01535 80 - 109 2.6e-06 PPR repeat
PPR_long PF17177 88 - 228 1.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 100 - 156 3.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 108 - 137 2e-06 PPR repeat
PPR_2 PF13041 111 - 160 1.7e-13 PPR repeat family
PPR_1 PF12854 144 - 172 3.9e-09 PPR repeat
PPR_2 PF13041 146 - 195 6.8e-17 PPR repeat family
PPR PF01535 150 - 179 2.6e-08 PPR repeat
PPR_1 PF12854 178 - 207 3.3e-09 PPR repeat
PPR_2 PF13041 181 - 229 6.9e-14 PPR repeat family
PPR PF01535 184 - 213 6e-06 PPR repeat
PPR_long PF17177 200 - 317 8.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 216 - 263 3.6e-08 PPR repeat family
TPR_24 PF23276 278 - 382 3.8e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 283 - 314 1.7e-07 PPR repeat
PPR_2 PF13041 287 - 335 1.7e-17 PPR repeat family
PPR_1 PF12854 317 - 349 9.1e-08 PPR repeat
PPR_1 PF12854 352 - 385 3.9e-07 PPR repeat
PPR_2 PF13041 357 - 401 1.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012545)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AccB1I GGYRCC 1 cut(s) 288
AccI GTMKAC 4 cut(s) 171, 325, 746, 971
AciI CCGC 2 cut(s) 598, 1007
AcsI RAATTY 3 cut(s) 517, 612, 1347
AfaI GTAC 4 cut(s) 238, 488, 557, 1142
AfiI CCNNNNNNNGG 2 cut(s) 70, 273
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 7 cut(s) 34, 244, 676, 854, 914, 1192, 1352
AhdI GACNNNNNGTC 1 cut(s) 865
AjnI CCWGG 4 cut(s) 266, 291, 408, 1277
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 7 cut(s) 215, 446, 681, 917, 1019, 1112, 1336
AluI AGCT 7 cut(s) 215, 446, 681, 917, 1019, 1112, 1336
Alw21I GWGCWC 2 cut(s) 1027, 1288
Alw26I GTCTC 2 cut(s) 288, 1148
AoxI GGCC 3 cut(s) 261, 469, 952
ApeKI GCWGC 5 cut(s) 182, 443, 681, 782, 917
ApoI RAATTY 3 cut(s) 517, 612, 1347
AseI ATTAAT 2 cut(s) 465, 836
AspS9I GGNCC 3 cut(s) 261, 622, 952
AsuC2I CCSGG 2 cut(s) 64, 259
AsuHPI GGTGA 1 cut(s) 1127
AvaII GGWCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 397, 1292
Bbv12I GWGCWC 2 cut(s) 1027, 1288
BbvI GCAGC 5 cut(s) 169, 455, 668, 769, 904
BccI CCATC 9 cut(s) 92, 749, 799, 896, 925, 986, 1048, 1091, 1247
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 4 cut(s) 268, 293, 410, 1279
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 2 cut(s) 64, 259
BcoDI GTCTC 2 cut(s) 288, 1148
BfaI CTAG 3 cut(s) 24, 548, 1158
BfmI CTRYAG 2 cut(s) 617, 666
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 6 cut(s) 183, 444, 599, 682, 783, 918
BlsI GCNGC 6 cut(s) 184, 445, 600, 683, 784, 919
Bme1390I CCNGG 6 cut(s) 64, 259, 268, 293, 410, 1279
Bme18I GGWCC 1 cut(s) 622
BmeRI GACNNNNNGTC 1 cut(s) 865
BmgT120I GGNCC 3 cut(s) 261, 622, 952
BmiI GGNNCC 5 cut(s) 120, 262, 290, 953, 1214
BmrFI CCNGG 6 cut(s) 64, 259, 268, 293, 410, 1279
BmsI GCATC 4 cut(s) 169, 348, 640, 1232
BpiI GAAGAC 2 cut(s) 397, 1292
BpuEI CTTGAG 1 cut(s) 734
BpuMI CCSGG 2 cut(s) 64, 259
Bsa29I ATCGAT 1 cut(s) 1122
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 258, 706, 1182
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 273
Bse1I ACTGG 1 cut(s) 802
Bse3DI GCAATG 2 cut(s) 777, 1137
BseBI CCWGG 4 cut(s) 268, 293, 410, 1279
BseCI ATCGAT 1 cut(s) 1122
BseDI CCNNGG 3 cut(s) 258, 706, 1182
BseGI GGATG 3 cut(s) 328, 810, 940
BseLI CCNNNNNNNGG 2 cut(s) 70, 273
BseMI GCAATG 2 cut(s) 777, 1137
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 5 cut(s) 169, 455, 668, 769, 904
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 754
Bsh1285I CGRYCG 1 cut(s) 1126
BshFI GGCC 3 cut(s) 263, 471, 954
BshNI GGYRCC 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 1122
BsiEI CGRYCG 1 cut(s) 1126
BsiHKAI GWGCWC 2 cut(s) 1027, 1288
BsiSI CCGG 2 cut(s) 64, 258
BslI CCNNNNNNNGG 2 cut(s) 70, 273
BsmAI GTCTC 2 cut(s) 288, 1148
BsnI GGCC 3 cut(s) 263, 471, 954
Bsp1286I GDGCHC 2 cut(s) 1027, 1288
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 3 cut(s) 493, 1123, 1340
BspACI CCGC 2 cut(s) 598, 1007
BspANI GGCC 3 cut(s) 263, 471, 954
BspDI ATCGAT 1 cut(s) 1122
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 5 cut(s) 120, 262, 290, 953, 1214
BspQI GCTCTTC 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 288
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 2 cut(s) 777, 1137
BsrGI TGTACA 1 cut(s) 1140
BsrI ACTGG 1 cut(s) 802
BssECI CCNNGG 3 cut(s) 258, 706, 1182
BssMI GATC 3 cut(s) 493, 1123, 1340
BssNAI GTATAC 3 cut(s) 326, 747, 972
BssT1I CCWWGG 1 cut(s) 1182
Bst1107I GTATAC 3 cut(s) 326, 747, 972
Bst2UI CCWGG 4 cut(s) 268, 293, 410, 1279
Bst4CI ACNGT 2 cut(s) 670, 775
Bst6I CTCTTC 2 cut(s) 671, 728
BstAFI CTTAAG 1 cut(s) 791
BstAUI TGTACA 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 603, 1284
BstDEI CTNAG 3 cut(s) 422, 693, 1227
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 3 cut(s) 328, 810, 940
BstKTI GATC 3 cut(s) 496, 1126, 1343
BstMAI GTCTC 2 cut(s) 288, 1148
BstMBI GATC 3 cut(s) 493, 1123, 1340
BstMCI CGRYCG 1 cut(s) 1126
BstNI CCWGG 4 cut(s) 268, 293, 410, 1279
BstSCI CCNGG 6 cut(s) 62, 257, 266, 291, 408, 1277
BstSFI CTRYAG 2 cut(s) 617, 666
BstV1I GCAGC 5 cut(s) 169, 455, 668, 769, 904
BstV2I GAAGAC 2 cut(s) 397, 1292
BstZ17I GTATAC 3 cut(s) 326, 747, 972
Bsu15I ATCGAT 1 cut(s) 1122
BsuRI GGCC 3 cut(s) 263, 471, 954
BsuTUI ATCGAT 1 cut(s) 1122
BtgI CCRYGG 1 cut(s) 706
BtsCI GGATG 3 cut(s) 328, 810, 940
BtsIMutI CAGTG 3 cut(s) 489, 577, 771
Cac8I GCNNGC 2 cut(s) 603, 1284
CciI TCATGA 1 cut(s) 984
Cfr13I GGNCC 3 cut(s) 261, 622, 952
ClaI ATCGAT 1 cut(s) 1122
Csp6I GTAC 4 cut(s) 237, 487, 556, 1141
CviAII CATG 7 cut(s) 152, 440, 497, 641, 826, 985, 1064
CviQI GTAC 4 cut(s) 237, 487, 556, 1141
DdeI CTNAG 3 cut(s) 422, 693, 1227
DpnI GATC 3 cut(s) 495, 1125, 1342
DpnII GATC 3 cut(s) 493, 1123, 1340
DriI GACNNNNNGTC 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 671, 728
Eam1105I GACNNNNNGTC 1 cut(s) 865
EarI CTCTTC 2 cut(s) 671, 728
Eco130I CCWWGG 1 cut(s) 1182
Eco32I GATATC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 622
EcoO109I RGGNCCY 2 cut(s) 622, 952
EcoRII CCWGG 4 cut(s) 266, 291, 408, 1277
EcoRV GATATC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 1182
EcoT22I ATGCAT 2 cut(s) 44, 363
ErhI CCWWGG 1 cut(s) 1182
FaeI CATG 7 cut(s) 155, 443, 500, 644, 829, 988, 1067
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 668, 700
FatI CATG 7 cut(s) 151, 439, 496, 640, 825, 984, 1063
FauI CCCGC 1 cut(s) 1000
FauNDI CATATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 493
FblI GTMKAC 4 cut(s) 171, 325, 746, 971
Fnu4HI GCNGC 6 cut(s) 183, 444, 599, 682, 783, 918
FokI GGATG 3 cut(s) 315, 817, 947
Fsp4HI GCNGC 6 cut(s) 183, 444, 599, 682, 783, 918
FspBI CTAG 3 cut(s) 24, 548, 1158
GluI GCNGC 6 cut(s) 183, 444, 599, 682, 783, 918
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 3 cut(s) 263, 471, 954
HapII CCGG 2 cut(s) 64, 258
Hin1II CATG 7 cut(s) 155, 443, 500, 644, 829, 988, 1067
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 1334
HinfI GANTC 7 cut(s) 271, 402, 632, 946, 1059, 1163, 1178
HpaII CCGG 2 cut(s) 64, 258
HphI GGTGA 1 cut(s) 1127
Hpy166II GTNNAC 6 cut(s) 172, 326, 489, 747, 972, 1317
Hpy188I TCNGA 3 cut(s) 123, 727, 1092
Hpy188III TCNNGA 3 cut(s) 227, 332, 985
Hpy8I GTNNAC 6 cut(s) 172, 326, 489, 747, 972, 1317
HpyAV CCTTC 4 cut(s) 314, 795, 803, 1203
HpyCH4III ACNGT 2 cut(s) 670, 775
HpyCH4IV ACGT 5 cut(s) 526, 554, 589, 1071, 1369
HpyF3I CTNAG 3 cut(s) 422, 693, 1227
HpySE526I ACGT 5 cut(s) 526, 554, 589, 1071, 1369
Hsp92II CATG 7 cut(s) 155, 443, 500, 644, 829, 988, 1067
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 3 cut(s) 493, 1123, 1340
LguI GCTCTTC 1 cut(s) 671
LmnI GCTCC 2 cut(s) 544, 812
Lsp1109I GCAGC 5 cut(s) 169, 455, 668, 769, 904
LweI GCATC 4 cut(s) 169, 348, 640, 1232
MaeI CTAG 3 cut(s) 24, 548, 1158
MaeII ACGT 5 cut(s) 526, 554, 589, 1071, 1369
MaeIII GTNAC 4 cut(s) 344, 527, 550, 1365
MalI GATC 3 cut(s) 495, 1125, 1342
MboI GATC 3 cut(s) 493, 1123, 1340
MboII GAAGA 4 cut(s) 397, 688, 745, 1292
MfeI CAATTG 1 cut(s) 1352
MhlI GDGCHC 2 cut(s) 1027, 1288
MluCI AATT 9 cut(s) 244, 517, 612, 833, 1084, 1136, 1144, 1347, 1352
MlyI GAGTC 2 cut(s) 411, 1172
MnlI CCTC 3 cut(s) 440, 447, 600
Mph1103I ATGCAT 2 cut(s) 44, 363
MslI CAYNNNNRTG 3 cut(s) 333, 548, 854
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 2 cut(s) 64, 258
MspR9I CCNGG 6 cut(s) 64, 259, 268, 293, 410, 1279
MunI CAATTG 1 cut(s) 1352
MvaI CCWGG 4 cut(s) 268, 293, 410, 1279
NciI CCSGG 2 cut(s) 64, 259
NdeI CATATG 1 cut(s) 38
NdeII GATC 3 cut(s) 493, 1123, 1340
NlaIII CATG 7 cut(s) 155, 443, 500, 644, 829, 988, 1067
NlaIV GGNNCC 5 cut(s) 120, 262, 290, 953, 1214
NmeAIII GCCGAG 1 cut(s) 1339
NmuCI GTSAC 2 cut(s) 527, 550
NsiI ATGCAT 2 cut(s) 44, 363
OliI CACNNNNGTG 1 cut(s) 548
PagI TCATGA 1 cut(s) 984
PciSI GCTCTTC 1 cut(s) 671
PcsI WCGNNNNNNNCGW 2 cut(s) 551, 1366
PfeI GAWTC 5 cut(s) 271, 632, 946, 1059, 1163
PfoI TCCNGGA 1 cut(s) 408
PkrI GCNGC 6 cut(s) 184, 445, 600, 683, 784, 919
Ple19I CGATCG 1 cut(s) 1126
PleI GAGTC 2 cut(s) 410, 1172
PpsI GAGTC 2 cut(s) 410, 1172
Ppu21I YACGTR 1 cut(s) 590
PpuMI RGGWCCY 1 cut(s) 622
PshBI ATTAAT 2 cut(s) 465, 836
PsiI TTATAA 1 cut(s) 873
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 4 cut(s) 266, 291, 408, 1277
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 4 cut(s) 266, 291, 408, 1277
PspN4I GGNNCC 5 cut(s) 120, 262, 290, 953, 1214
PspPI GGNCC 3 cut(s) 261, 622, 952
PspPPI RGGWCCY 1 cut(s) 622
PvuI CGATCG 1 cut(s) 1126
RsaI GTAC 4 cut(s) 238, 488, 557, 1142
RsaNI GTAC 4 cut(s) 237, 487, 556, 1141
RseI CAYNNNNRTG 3 cut(s) 333, 548, 854
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 671
SatI GCNGC 6 cut(s) 183, 444, 599, 682, 783, 918
Sau3AI GATC 3 cut(s) 493, 1123, 1340
Sau96I GGNCC 3 cut(s) 261, 622, 952
SchI GAGTC 2 cut(s) 411, 1172
ScrFI CCNGG 6 cut(s) 64, 259, 268, 293, 410, 1279
SduI GDGCHC 2 cut(s) 1027, 1288
SfaNI GCATC 4 cut(s) 169, 348, 640, 1232
SfcI CTRYAG 2 cut(s) 617, 666
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 3 cut(s) 333, 548, 854
SmlI CTYRAG 2 cut(s) 713, 791
SmoI CTYRAG 2 cut(s) 713, 791
Sse9I AATT 9 cut(s) 244, 517, 612, 833, 1084, 1136, 1144, 1347, 1352
SsiI CCGC 2 cut(s) 598, 1007
SspI AATATT 2 cut(s) 352, 562
SspMI CTAG 3 cut(s) 24, 548, 1158
StyD4I CCNGG 6 cut(s) 62, 257, 266, 291, 408, 1277
StyI CCWWGG 1 cut(s) 1182
TaaI ACNGT 2 cut(s) 670, 775
TaiI ACGT 5 cut(s) 529, 557, 592, 1074, 1372
TaqI TCGA 3 cut(s) 171, 1122, 1339
TasI AATT 9 cut(s) 244, 517, 612, 833, 1084, 1136, 1144, 1347, 1352
TatI WGTACW 2 cut(s) 236, 1140
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 5 cut(s) 271, 632, 946, 1059, 1163
TscAI CASTG 3 cut(s) 496, 577, 778
TseFI GTSAC 2 cut(s) 527, 550
TseI GCWGC 5 cut(s) 182, 443, 681, 782, 917
Tsp45I GTSAC 2 cut(s) 527, 550
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 3 cut(s) 496, 577, 778
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 622
VspI ATTAAT 2 cut(s) 465, 836
XapI RAATTY 3 cut(s) 517, 612, 1347
XmiI GTMKAC 4 cut(s) 171, 325, 746, 971
XspI CTAG 3 cut(s) 24, 548, 1158
Zsp2I ATGCAT 2 cut(s) 44, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.