Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012545

Physical Location & Seq

Genomic Coordinates Reverse (-)

23665695 .. 23668389

Gene Structure 2695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATGGTTGGTGGATTATCGACTAAGCTGTTGAACATATGCATAGCTTCATTTTGTAAAGTCCGGCTATTGGAGAAAGCAGAAGCCATTGTAATTGACGGTATAAGATTAGGGTTGATTCCAGATGTGGTAACTTACAATACTTTGGTTAGTGCCTATTCTCGGTTTGTTAGCTTAGATGCAGCTTATTCTGTTATTCATAGAATGAAAGAAGCTGGGATAAGTCCAAATGTCATTACTTACAATTCTTTGATGTCCGGGGCGACCCAGAATTGCTTATTGTCACGATCCCTGGATTTGTTTGAGGAAATGTTACTAGCAGGTGTACATCCTAATTTATGGAGCTACAACATTCTGATGCATTGTTTCTTTAAATTAGGAAAACCTGATGAAGCCAACAAAGTATTTCAGGATATTTTACTTAGCAATCTTACTCCCCACCCAGCTACGCTTAACATAATGATTAATGGCCTTTGTAACAATGGATACATCGATAATGCCCTTATGTTATATAGGAATTTGCAACGCCATGGATTTGTTCCCCAATTGGTGACATACAATATTCTTATCAACTGGCTATGCAAGACACGCAGATTGAGACAAGCAAGGAGAATTCTAAAGGAACTTGGGGAATCAGGCCATGAGCCAAGTCTCATAACCTACACTACAGTTATGAAATGCTGCTTTAGGTCCAACAAGTATGACAAAGGGCTTGAGATTATGTCAGTTATGATGGGTAAAGGGTATACTTTTGATGGCTATGCATGCTGCACAGTCGTTGCTGCTTTGGTTAAGACTGGGAGGATAGAAGAGGCAAATGCTTGCATGGAACAGACAATAAGGAACGGCGTTGAACTTGATTTAGTAGCTTACAACACCTTACTCAACATGTATTGTAGAGAAGGTAAGTTTGAAGCTGCCTATAAGCTGTTGGATGAAATGGAGAATGGAGGTCTGCTGTGCGACAAGTATACCCACACAATTATAATTGATGGATTGTGTAAGGCCGGTAATATTAGCGGGGCTCAAAAACATTTACATTATATGAAAATGATGGGCTTCCATGAAAACTTGGTTGCCCTCAACTGCATGATTGATGGCTTATGTAAAGCTGGTCAAATCGATCGTGCAATGGAATTGTACAAATCAATGGAGACTAAAGATTCATTTACCTACACCTCCTTGGTGCACAATCTTTGCAAGGCTGGAAGGTTTCGATTGGCATCCAAGCTTATGATGAAATGTTTAAGACATGGGAAGAAAATACCCAAGGCTACCCAACGGGCTGTCTTTGATGGTCTTTATAGTTCAGGGTTTACAAACGAAGCAAGGAAGCTTTGGTGGAAAATTCGAGTGGCTCGAATATTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

458

Amino Acids

51.59

Weight (kDa)

9.07

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46680
fragaria_vesca	FvH4_6g27690
malus_domestica	MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica	Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis	pycom07g04330
rosa_chinensis	RchiOBHm_Chr2g0130841
rosa_laevigata	RLG00000019152
rosa_multiflora	Rmu_sc0003629.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa	Rorug02G0293500 Rorug02G0293600
rosa_samantha	Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana	Rw2G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	986
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	2 cut(s)	746, 971
AciI	CCGC	1 cut(s)	1020
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	517, 612, 1347
AfaI	GTAC	2 cut(s)	327, 1142
AfiI	CCNNNNNNNGG	2 cut(s)	70, 162
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	3 cut(s)	34, 854, 914
AjnI	CCWGG	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	3 cut(s)	592, 656, 1148
Alw44I	GTGCAC	1 cut(s)	1187
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	3 cut(s)	469, 637, 1005
ApaLI	GTGCAC	1 cut(s)	1187
ApeKI	GCWGC	5 cut(s)	182, 681, 768, 782, 917
ApoI	RAATTY	3 cut(s)	517, 612, 1347
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	690
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	1191
BanII	GRGCYC	1 cut(s)	1027
Bbv12I	GWGCWC	1 cut(s)	1191
BbvI	GCAGC	5 cut(s)	194, 668, 755, 769, 904
BccI	CCATC	6 cut(s)	727, 749, 986, 1048, 1091, 1289
BceAI	ACGGC	1 cut(s)	862
BciT130I	CCWGG	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	592, 656, 1148
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	5 cut(s)	183, 682, 769, 783, 918
BlsI	GCNGC	5 cut(s)	184, 683, 770, 784, 919
Bme1390I	CCNGG	2 cut(s)	259, 293
Bme18I	GGWCC	1 cut(s)	690
BmgT120I	GGNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	259, 293
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	3 cut(s)	169, 348, 1232
BmuI	ACTGGG	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	2 cut(s)	492, 1122
BsaBI	GATNNNNATC	1 cut(s)	1222
BsaJI	CCNNGG	5 cut(s)	258, 291, 529, 1182, 1269
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 162
Bse118I	RCCGGY	1 cut(s)	1007
Bse1I	ACTGG	2 cut(s)	578, 802
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	1 cut(s)	1222
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	2 cut(s)	492, 1122
BseDI	CCNNGG	5 cut(s)	258, 291, 529, 1182, 1269
BseGI	GGATG	3 cut(s)	328, 940, 1223
BseJI	GATNNNNATC	1 cut(s)	1222
BseLI	CCNNNNNNNGG	2 cut(s)	70, 162
BseMI	GCAATG	1 cut(s)	1137
BseNI	ACTGG	2 cut(s)	578, 802
BseSI	GKGCMC	1 cut(s)	1191
BseXI	GCAGC	5 cut(s)	194, 668, 755, 769, 904
BseYI	CCCAGC	2 cut(s)	215, 442
BsgI	GTGCAG	1 cut(s)	754
Bsh1285I	CGRYCG	1 cut(s)	1126
BshFI	GGCC	3 cut(s)	471, 639, 1007
BshVI	ATCGAT	2 cut(s)	492, 1122
BsiEI	CGRYCG	1 cut(s)	1126
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiSI	CCGG	3 cut(s)	64, 258, 1008
BslI	CCNNNNNNNGG	2 cut(s)	70, 162
BsmAI	GTCTC	3 cut(s)	592, 656, 1148
BsnI	GGCC	3 cut(s)	471, 639, 1007
Bsp1286I	GDGCHC	2 cut(s)	1027, 1191
Bsp1407I	TGTACA	2 cut(s)	325, 1140
Bsp143I	GATC	2 cut(s)	287, 1123
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	1 cut(s)	1020
BspANI	GGCC	3 cut(s)	471, 639, 1007
BspDI	ATCGAT	2 cut(s)	492, 1122
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	1 cut(s)	1007
BsrGI	TGTACA	2 cut(s)	325, 1140
BsrI	ACTGG	2 cut(s)	578, 802
BssAI	RCCGGY	1 cut(s)	1007
BssECI	CCNNGG	5 cut(s)	258, 291, 529, 1182, 1269
BssMI	GATC	2 cut(s)	287, 1123
BssNAI	GTATAC	2 cut(s)	747, 972
BssT1I	CCWWGG	3 cut(s)	529, 1182, 1269
Bst1107I	GTATAC	2 cut(s)	747, 972
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	101, 670, 775
Bst6I	CTCTTC	1 cut(s)	804
BstAUI	TGTACA	2 cut(s)	325, 1140
BstC8I	GCNNGC	2 cut(s)	766, 823
BstDEI	CTNAG	3 cut(s)	24, 175, 422
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	328, 940, 1223
BstKTI	GATC	2 cut(s)	290, 1126
BstMAI	GTCTC	3 cut(s)	592, 656, 1148
BstMBI	GATC	2 cut(s)	287, 1123
BstMCI	CGRYCG	1 cut(s)	1126
BstMWI	GCNNNNNNNGC	2 cut(s)	588, 765
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	768, 892
BstSCI	CCNGG	2 cut(s)	257, 291
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	1191
BstV1I	GCAGC	5 cut(s)	194, 668, 755, 769, 904
BstZ17I	GTATAC	2 cut(s)	747, 972
Bsu15I	ATCGAT	2 cut(s)	492, 1122
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	471, 639, 1007
BsuTUI	ATCGAT	2 cut(s)	492, 1122
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	328, 940, 1223
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	766, 823
Cfr10I	RCCGGY	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	690
ClaI	ATCGAT	2 cut(s)	492, 1122
Csp6I	GTAC	2 cut(s)	326, 1141
CviAII	CATG	8 cut(s)	530, 641, 765, 826, 889, 1064, 1090, 1253
CviQI	GTAC	2 cut(s)	326, 1141
DdeI	CTNAG	3 cut(s)	24, 175, 422
DpnI	GATC	2 cut(s)	289, 1125
DpnII	GATC	2 cut(s)	287, 1123
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	3 cut(s)	529, 1182, 1269
Eco24I	GRGCYC	1 cut(s)	1027
Eco47I	GGWCC	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	3 cut(s)	529, 1182, 1269
EcoT22I	ATGCAT	3 cut(s)	44, 363, 766
EcoT38I	GRGCYC	1 cut(s)	1027
ErhI	CCWWGG	3 cut(s)	529, 1182, 1269
FaeI	CATG	8 cut(s)	533, 644, 768, 829, 892, 1067, 1093, 1256
FatI	CATG	8 cut(s)	529, 640, 764, 825, 888, 1063, 1089, 1252
FauI	CCCGC	1 cut(s)	1013
FauNDI	CATATG	1 cut(s)	38
FblI	GTMKAC	2 cut(s)	746, 971
Fnu4HI	GCNGC	5 cut(s)	183, 682, 769, 783, 918
FokI	GGATG	3 cut(s)	315, 947, 1210
FriOI	GRGCYC	1 cut(s)	1027
Fsp4HI	GCNGC	5 cut(s)	183, 682, 769, 783, 918
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	5 cut(s)	183, 682, 769, 783, 918
GsaI	CCCAGC	2 cut(s)	219, 446
HaeIII	GGCC	3 cut(s)	471, 639, 1007
HapII	CCGG	3 cut(s)	64, 258, 1008
Hin1II	CATG	8 cut(s)	533, 644, 768, 829, 892, 1067, 1093, 1256
HindIII	AAGCTT	2 cut(s)	1229, 1334
HinfI	GANTC	3 cut(s)	118, 632, 1163
HpaII	CCGG	3 cut(s)	64, 258, 1008
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	5 cut(s)	326, 747, 972, 1189, 1317
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	3 cut(s)	122, 285, 410
Hpy8I	GTNNAC	5 cut(s)	326, 747, 972, 1189, 1317
HpyAV	CCTTC	2 cut(s)	896, 1203
HpyCH4III	ACNGT	3 cut(s)	101, 670, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	588, 765
HpyF3I	CTNAG	3 cut(s)	24, 175, 422
Hsp92II	CATG	8 cut(s)	533, 644, 768, 829, 892, 1067, 1093, 1256
Kzo9I	GATC	2 cut(s)	287, 1123
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	5 cut(s)	194, 668, 755, 769, 904
LweI	GCATC	3 cut(s)	169, 348, 1232
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	5 cut(s)	130, 282, 312, 476, 550
MalI	GATC	2 cut(s)	289, 1125
MboI	GATC	2 cut(s)	287, 1123
MboII	GAAGA	2 cut(s)	821, 1270
MfeI	CAATTG	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	1027, 1191
MmeI	TCCRAC	2 cut(s)	717, 912
MnlI	CCTC	6 cut(s)	298, 795, 805, 944, 1091, 1189
Mph1103I	ATGCAT	3 cut(s)	44, 363, 766
MseI	TTAA	5 cut(s)	372, 453, 465, 792, 1247
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	3 cut(s)	64, 258, 1008
MspR9I	CCNGG	2 cut(s)	259, 293
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	588, 765
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	287, 1123
NlaIII	CATG	8 cut(s)	533, 644, 768, 829, 892, 1067, 1093, 1256
NmuCI	GTSAC	2 cut(s)	282, 550
NsiI	ATGCAT	3 cut(s)	44, 363, 766
NspI	RCATGY	2 cut(s)	768, 892
PaeI	GCATGC	1 cut(s)	768
PaqCI	CACCTGC	1 cut(s)	311
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	1357
PfeI	GAWTC	3 cut(s)	118, 632, 1163
PkrI	GCNGC	5 cut(s)	184, 683, 770, 784, 919
Ple19I	CGATCG	1 cut(s)	1126
PscI	ACATGT	1 cut(s)	888
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	986
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	2 cut(s)	215, 442
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	690
PvuI	CGATCG	1 cut(s)	1126
RsaI	GTAC	2 cut(s)	327, 1142
RsaNI	GTAC	2 cut(s)	326, 1141
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	5 cut(s)	372, 453, 465, 792, 1247
SatI	GCNGC	5 cut(s)	183, 682, 769, 783, 918
Sau3AI	GATC	2 cut(s)	287, 1123
Sau96I	GGNCC	1 cut(s)	690
ScrFI	CCNGG	2 cut(s)	259, 293
SduI	GDGCHC	2 cut(s)	1027, 1191
SfaNI	GCATC	3 cut(s)	169, 348, 1232
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SphI	GCATGC	1 cut(s)	768
SsiI	CCGC	1 cut(s)	1020
SspI	AATATT	3 cut(s)	562, 1015, 1365
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	257, 291
StyI	CCWWGG	3 cut(s)	529, 1182, 1269
TaaI	ACNGT	3 cut(s)	101, 670, 775
TaqI	TCGA	6 cut(s)	20, 492, 1122, 1216, 1351, 1360
TatI	WGTACW	2 cut(s)	325, 1140
TfiI	GAWTC	3 cut(s)	118, 632, 1163
Tru1I	TTAA	5 cut(s)	372, 453, 465, 792, 1247
Tru9I	TTAA	5 cut(s)	372, 453, 465, 792, 1247
TseFI	GTSAC	2 cut(s)	282, 550
TseI	GCWGC	5 cut(s)	182, 681, 768, 782, 917
Tsp45I	GTSAC	2 cut(s)	282, 550
VneI	GTGCAC	1 cut(s)	1187
VpaK11BI	GGWCC	1 cut(s)	690
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	3 cut(s)	517, 612, 1347
XceI	RCATGY	2 cut(s)	768, 892
XmiI	GTMKAC	2 cut(s)	746, 971
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	3 cut(s)	44, 363, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.