Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012545

Physical Location & Seq

Genomic Coordinates Forward (+)

9644856 .. 9648129

Gene Structure 3274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G114500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATGTTTCGTGGATTATCAACTAAGCTGTTGAACATATGCATAGCTTCATTTTGTAAAGTCCGGCTACTGGAGAAAGCAGAAGCCATTATAATTGACGGCGAAAGATTAGGGGTGATTCCAGATGTGGTAACTTACAATACTTTGGTCAGTGCATATTATCGGTATGTTAGCTTAGATGCAGCTTATTCTGTTATTCATAGAATGAAAGAAGCTGGGATAAGTCCAGATGTCGTTACTTACAATTCTTTGATAGCTGGGTCGACCAGGGATTGTTTATTATCACAATCCCTGGATTTGTTTGAGGAAATGCTACAAGCAGGTATACATCCTGATGTATGGAGTTACAATATTCTGATGAATTGTTTCTTTAAATTGGGAAAACCCGATGAAGCCAACAGAGTATTTCAGGATATTTTACTTAGCAATCTCGCTTCTCACCCAGCTACCTTTAACATAATGATTAATGGCCTTTGTAAAAATGAATACATCGATAATGCCCTTATGTTATTTAGAAATTTGCAACGTCATGGTTTTGTTCCCCAATTAGTGACATACAATATTCTTATCAATGGGCTATGCAAGGCACGCAGATTGCGGCAAGCAAGGACAATGCTAAGGGAACTTGGGGAATCAGATCTTGAGCCAAATGCCATAACCTACACTACAGTTATGAAATGCTGCTTTAGGTCTAAGCAGTATGACAAAGGGCTTGATATTATGTCGGAGATGAAGAGTAAAGGGTATACTTTTGATAGTTTTGCATACTGCACAGTCGTTGCTGCTTTAGTTAAGACTGGGAGGATAGAAGAGGCAAATGCTTGCATGGAACAGGTAATGAGTAATGGCATTGAACTTGATTTAGCAGCTTATAACACCTTACTTAATATGTATTGTAGAGAAGGTAAGTTTGAAGCTGCCTATAAGTTGTTGGATGAAATAGAGAAGGGAGGTCTGCTGTGTGACAAGTATACCCACACAATTATAATTGATGGCTTATGTAAAGCTGGTAATATTACTGGGGCTCAACACCATTTACATTATATGAAAATGATGGGCTTCCATGAAAACTTGGTTGCCCTCAACTGCATGATTGATGGGTTGTGTAAAGCTGGTCATATTGATCGTGCAATGGAATTGTACAAATCAATGGAGACTAAAGACTCTGTTACCTACACCTCCTTGGTGCACAATCTTTGCAGGGCTGGAAGGTTCCGTTGTGCATCCAAGCTTATGATGAAATGTTTAAAAGATGGCAAGAAAATACTCAGGGCTACCAAACGAGCTGTCGTTGCTGGTCTTCGTAGTTCAGGGTATACAGATGAAGCAAAGAAACTTCAGTGGAAAATTCAAGTGGCTCGAATATTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

458

Amino Acids

51.62

Weight (kDa)

8.79

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46680
fragaria_vesca	FvH4_6g27690
malus_domestica	MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica	Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis	pycom07g04330
rosa_chinensis	RchiOBHm_Chr2g0130841
rosa_laevigata	RLG00000019152
rosa_multiflora	Rmu_sc0003629.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa	Rorug02G0293500 Rorug02G0293600
rosa_samantha	Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana	Rw2G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	92, 873, 986
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	5 cut(s)	263, 325, 746, 971, 1316
AciI	CCGC	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	517, 1347
AcuI	CTGAAG	1 cut(s)	1322
AfaI	GTAC	1 cut(s)	1142
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	4 cut(s)	34, 854, 914, 1352
AjnI	CCWGG	2 cut(s)	266, 291
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	1 cut(s)	1148
Alw44I	GTGCAC	1 cut(s)	1187
AoxI	GGCC	1 cut(s)	469
ApaLI	GTGCAC	1 cut(s)	1187
ApeKI	GCWGC	5 cut(s)	182, 681, 782, 866, 917
ApoI	RAATTY	2 cut(s)	517, 1347
ArsI	GACNNNNNNTTYG	2 cut(s)	1272, 1304
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	127, 431
BaeGI	GKGCMC	1 cut(s)	1191
BanII	GRGCYC	1 cut(s)	1027
BbsI	GAAGAC	1 cut(s)	1292
Bbv12I	GWGCWC	1 cut(s)	1191
BbvI	GCAGC	5 cut(s)	194, 668, 769, 878, 904
BccI	CCATC	4 cut(s)	986, 1048, 1091, 1247
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	268, 293
BcoDI	GTCTC	1 cut(s)	1148
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	311
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	6 cut(s)	183, 599, 682, 783, 867, 918
BlsI	GCNGC	6 cut(s)	184, 600, 683, 784, 868, 919
Bme1390I	CCNGG	2 cut(s)	268, 293
BmiI	GGNNCC	1 cut(s)	1214
BmrFI	CCNGG	2 cut(s)	268, 293
BmrI	ACTGGG	2 cut(s)	807, 1029
BmsI	GCATC	2 cut(s)	169, 1232
BmuI	ACTGGG	2 cut(s)	807, 1029
BpiI	GAAGAC	1 cut(s)	1292
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	267, 291, 1182
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	75, 802, 1024
Bse3DI	GCAATG	1 cut(s)	1137
BseBI	CCWGG	2 cut(s)	268, 293
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	267, 291, 1182
BseGI	GGATG	3 cut(s)	328, 940, 1223
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	1 cut(s)	1282
BseNI	ACTGG	3 cut(s)	75, 802, 1024
BseSI	GKGCMC	1 cut(s)	1191
BseXI	GCAGC	5 cut(s)	194, 668, 769, 878, 904
BseYI	CCCAGC	3 cut(s)	215, 257, 442
BsgI	GTGCAG	1 cut(s)	754
BshFI	GGCC	1 cut(s)	471
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	1148
BsnI	GGCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	1027, 1191
Bsp1407I	TGTACA	1 cut(s)	1140
Bsp143I	GATC	2 cut(s)	637, 1123
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	1281
BspDI	ATCGAT	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	1214
BspMI	ACCTGC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	1137
BsrGI	TGTACA	1 cut(s)	1140
BsrI	ACTGG	3 cut(s)	75, 802, 1024
BssECI	CCNNGG	3 cut(s)	267, 291, 1182
BssMI	GATC	2 cut(s)	637, 1123
BssNAI	GTATAC	4 cut(s)	326, 747, 972, 1317
BssT1I	CCWWGG	1 cut(s)	1182
Bst1107I	GTATAC	4 cut(s)	326, 747, 972, 1317
Bst2UI	CCWGG	2 cut(s)	268, 293
Bst4CI	ACNGT	2 cut(s)	670, 775
Bst6I	CTCTTC	2 cut(s)	728, 804
BstAUI	TGTACA	1 cut(s)	1140
BstC8I	GCNNGC	3 cut(s)	589, 603, 823
BstDEI	CTNAG	6 cut(s)	24, 175, 422, 617, 693, 1268
BstF5I	GGATG	3 cut(s)	328, 940, 1223
BstKTI	GATC	2 cut(s)	640, 1126
BstMAI	GTCTC	1 cut(s)	1148
BstMBI	GATC	2 cut(s)	637, 1123
BstMWI	GCNNNNNNNGC	2 cut(s)	588, 1292
BstNI	CCWGG	2 cut(s)	268, 293
BstSCI	CCNGG	2 cut(s)	266, 291
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	1191
BstV1I	GCAGC	5 cut(s)	194, 668, 769, 878, 904
BstV2I	GAAGAC	1 cut(s)	1292
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BstZ17I	GTATAC	4 cut(s)	326, 747, 972, 1317
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	471
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	328, 940, 1223
BtsIMutI	CAGTG	2 cut(s)	157, 1346
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	589, 603, 823
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	1141
CviAII	CATG	4 cut(s)	530, 826, 1064, 1090
CviQI	GTAC	1 cut(s)	1141
DdeI	CTNAG	6 cut(s)	24, 175, 422, 617, 693, 1268
DpnI	GATC	2 cut(s)	639, 1125
DpnII	GATC	2 cut(s)	637, 1123
DraI	TTTAAA	2 cut(s)	373, 1248
Eam1104I	CTCTTC	2 cut(s)	728, 804
EarI	CTCTTC	2 cut(s)	728, 804
Eco130I	CCWWGG	1 cut(s)	1182
Eco24I	GRGCYC	1 cut(s)	1027
Eco57I	CTGAAG	1 cut(s)	1322
EcoRII	CCWGG	2 cut(s)	266, 291
EcoT14I	CCWWGG	1 cut(s)	1182
EcoT22I	ATGCAT	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	1027
ErhI	CCWWGG	1 cut(s)	1182
FaeI	CATG	4 cut(s)	533, 829, 1067, 1093
FatI	CATG	4 cut(s)	529, 825, 1063, 1089
FauNDI	CATATG	1 cut(s)	38
FblI	GTMKAC	5 cut(s)	263, 325, 746, 971, 1316
Fnu4HI	GCNGC	6 cut(s)	183, 599, 682, 783, 867, 918
FokI	GGATG	3 cut(s)	315, 947, 1210
FriOI	GRGCYC	1 cut(s)	1027
Fsp4HI	GCNGC	6 cut(s)	183, 599, 682, 783, 867, 918
GluI	GCNGC	6 cut(s)	183, 599, 682, 783, 867, 918
GsaI	CCCAGC	3 cut(s)	219, 261, 446
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	4 cut(s)	533, 829, 1067, 1093
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	1229
HinfI	GANTC	3 cut(s)	118, 632, 1163
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	127, 431
Hpy166II	GTNNAC	6 cut(s)	264, 326, 747, 972, 1189, 1317
Hpy188I	TCNGA	3 cut(s)	357, 637, 727
Hpy188III	TCNNGA	5 cut(s)	122, 227, 332, 410, 641
Hpy8I	GTNNAC	6 cut(s)	264, 326, 747, 972, 1189, 1317
HpyAV	CCTTC	3 cut(s)	896, 940, 1203
HpyCH4III	ACNGT	2 cut(s)	670, 775
HpyCH4IV	ACGT	2 cut(s)	526, 1369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	588, 1292
HpyF3I	CTNAG	6 cut(s)	24, 175, 422, 617, 693, 1268
HpySE526I	ACGT	2 cut(s)	526, 1369
Hsp92II	CATG	4 cut(s)	533, 829, 1067, 1093
Kzo9I	GATC	2 cut(s)	637, 1123
Lsp1109I	GCAGC	5 cut(s)	194, 668, 769, 878, 904
LweI	GCATC	2 cut(s)	169, 1232
MaeII	ACGT	2 cut(s)	526, 1369
MaeIII	GTNAC	6 cut(s)	130, 235, 344, 550, 962, 1168
MalI	GATC	2 cut(s)	639, 1125
MboI	GATC	2 cut(s)	637, 1123
MboII	GAAGA	3 cut(s)	745, 821, 1292
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	1027, 1191
MlyI	GAGTC	1 cut(s)	1157
MmeI	TCCRAC	2 cut(s)	705, 912
MnlI	CCTC	6 cut(s)	298, 795, 805, 944, 1091, 1189
Mph1103I	ATGCAT	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	6 cut(s)	372, 453, 465, 792, 885, 1247
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	268, 293
MvaI	CCWGG	2 cut(s)	268, 293
MwoI	GCNNNNNNNGC	2 cut(s)	588, 1292
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	637, 1123
NlaIII	CATG	4 cut(s)	533, 829, 1067, 1093
NlaIV	GGNNCC	1 cut(s)	1214
NmuCI	GTSAC	2 cut(s)	550, 962
NsiI	ATGCAT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	1366
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	118, 632
PkrI	GCNGC	6 cut(s)	184, 600, 683, 784, 868, 919
PleI	GAGTC	1 cut(s)	1157
PpsI	GAGTC	1 cut(s)	1157
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	3 cut(s)	92, 873, 986
Psp6I	CCWGG	2 cut(s)	266, 291
PspFI	CCCAGC	3 cut(s)	215, 257, 442
PspGI	CCWGG	2 cut(s)	266, 291
PspN4I	GGNNCC	1 cut(s)	1214
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	1142
RsaNI	GTAC	1 cut(s)	1141
RseI	CAYNNNNRTG	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	262
SaqAI	TTAA	6 cut(s)	372, 453, 465, 792, 885, 1247
SatI	GCNGC	6 cut(s)	183, 599, 682, 783, 867, 918
Sau3AI	GATC	2 cut(s)	637, 1123
SchI	GAGTC	1 cut(s)	1157
ScrFI	CCNGG	2 cut(s)	268, 293
SduI	GDGCHC	2 cut(s)	1027, 1191
SfaNI	GCATC	2 cut(s)	169, 1232
SfcI	CTRYAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SsiI	CCGC	1 cut(s)	598
SspI	AATATT	4 cut(s)	352, 562, 1015, 1365
StyD4I	CCNGG	2 cut(s)	266, 291
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	2 cut(s)	670, 775
TaiI	ACGT	2 cut(s)	529, 1372
TaqI	TCGA	3 cut(s)	263, 492, 1360
TatI	WGTACW	1 cut(s)	1140
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	118, 632
Tru1I	TTAA	6 cut(s)	372, 453, 465, 792, 885, 1247
Tru9I	TTAA	6 cut(s)	372, 453, 465, 792, 885, 1247
TscAI	CASTG	2 cut(s)	157, 1346
TseFI	GTSAC	2 cut(s)	550, 962
TseI	GCWGC	5 cut(s)	182, 681, 782, 866, 917
Tsp45I	GTSAC	2 cut(s)	550, 962
TspGWI	ACGGA	1 cut(s)	1205
TspRI	CASTG	2 cut(s)	157, 1346
VneI	GTGCAC	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	517, 1347
XmiI	GTMKAC	5 cut(s)	263, 325, 746, 971, 1316
XmnI	GAANNNNTTC	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.