Rorug02G0293500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012545
Physical Location & Seq
Forward (+)
32375444 .. 32375917
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0293500.1

Sequence Viewer

Length: 474 bp
ATGACCACGAACCCACAGAAATGGAGAGCCCCTCTGAACCTTCTCCGTTGCTACGATGTCGTTTCGACTCATAACACCCGGCGTCTGTTGCACGACGGCCCAGACACTGTGGAGGAACTCCTAGACAGACACGTGGTGAAGAAAGTGAAACACTTGGACGAGGAGGAGGAAGAGCTGCTGAATCGGCGGCGACTGACGACCACGCGTCGGGAGGCGCTGTGTCTTTATCGAGACATTCTCAGGGCGACGCGGTTCTTCATGTGGACGGACTCTCGGGGCGTGCTATGGCGAGATGTGTTAAGAGAGAACGCGAGGAAGGAGTTCGAGGAGGCCCGGTTCGAAACGGATCCGGAAGTTGTGACCCGATTGCTGATCGGAGGGCATGATGCTGTACAGTCGGCGTTGGATAAGCTCGCCGAGAAGCAGAGGCAGCAGATTCAGAAGGAGCGAAGCGGTGGTGAAGATCAACCGTAA

Protein Analysis

157

Amino Acids

18.65

Weight (kDa)

6.98

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 70 - 131 8.8e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46680
fragaria_vesca FvH4_6g27690
malus_domestica MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis pycom07g04330
rosa_chinensis RchiOBHm_Chr2g0130841
rosa_laevigata RLG00000019152
rosa_multiflora Rmu_sc0003629.1_g000016
rosa_roxburghii Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa Rorug02G0293500 Rorug02G0293600
rosa_samantha Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana Rw2G027470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 205, 250, 311
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 3 cut(s) 187, 250, 453
AclWI GGATC 2 cut(s) 341, 354
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 136
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 2 cut(s) 130, 203
AhdI GACNNNNNGTC 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 175, 412
AluI AGCT 2 cut(s) 175, 412
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 341, 354
AlwNI CAGNNNCTG 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 273
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 2 cut(s) 97, 330
ApeKI GCWGC 2 cut(s) 175, 430
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 98, 331
AsuC2I CCSGG 2 cut(s) 79, 334
AsuHPI GGTGA 2 cut(s) 148, 470
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 273
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 133
BbvI GCAGC 2 cut(s) 162, 442
BceAI ACGGC 1 cut(s) 112
BcnI CCSGG 2 cut(s) 79, 334
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 3 cut(s) 176, 188, 431
BlsI GCNGC 3 cut(s) 177, 189, 432
Bme1390I CCNGG 2 cut(s) 79, 334
BmeRI GACNNNNNGTC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 98, 331
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 79, 334
BmsI GCATC 1 cut(s) 376
BplI GAGNNNNNCTC 4 cut(s) 16, 48, 222, 254
Bpu14I TTCGAA 1 cut(s) 339
BpuMI CCSGG 2 cut(s) 79, 334
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 253
BseRI GAGGAG 3 cut(s) 176, 179, 341
BseXI GCAGC 2 cut(s) 162, 442
Bsh1236I CGCG 3 cut(s) 205, 250, 311
BshFI GGCC 2 cut(s) 99, 332
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 3 cut(s) 79, 334, 350
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 2 cut(s) 99, 332
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 3 cut(s) 346, 372, 463
BspACI CCGC 3 cut(s) 187, 250, 453
BspANI GGCC 2 cut(s) 99, 332
BspCNI CTCAG 1 cut(s) 252
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 3 cut(s) 205, 250, 311
BspLI GGNNCC 1 cut(s) 348
BspPI GGATC 2 cut(s) 341, 354
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 391
BssMI GATC 3 cut(s) 346, 372, 463
BssNI GRCGYC 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 109, 396, 471
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 281, 414
BstDEI CTNAG 1 cut(s) 239
BstFNI CGCG 3 cut(s) 205, 250, 311
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 349, 375, 466
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 346, 372, 463
BstMWI GCNNNNNNNGC 3 cut(s) 88, 184, 430
BstSCI CCNGG 2 cut(s) 77, 332
BstUI CGCG 3 cut(s) 205, 250, 311
BstV1I GCAGC 2 cut(s) 162, 442
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 99, 332
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 281, 414
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 98, 331
CseI GACGC 3 cut(s) 71, 194, 256
Csp6I GTAC 1 cut(s) 392
CviAII CATG 2 cut(s) 259, 383
CviJI RGCY 5 cut(s) 29, 99, 175, 332, 412
CviKI_1 RGCY 5 cut(s) 29, 99, 175, 332, 412
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 348, 374, 465
DpnII GATC 3 cut(s) 346, 372, 463
DraIII CACNNNGTG 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 31
Eco72I CACGTG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 2 cut(s) 262, 386
FaiI YATR 4 cut(s) 72, 260, 286, 384
FatI CATG 2 cut(s) 258, 382
Fnu4HI GCNGC 3 cut(s) 176, 188, 431
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 176, 188, 431
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 176, 188, 431
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 2 cut(s) 99, 332
HapII CCGG 3 cut(s) 79, 334, 350
HgaI GACGC 3 cut(s) 71, 194, 256
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 262, 386
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 4 cut(s) 67, 181, 269, 436
HpaII CCGG 3 cut(s) 79, 334, 350
HphI GGTGA 2 cut(s) 148, 470
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 36, 377, 441
Hpy188III TCNNGA 3 cut(s) 209, 230, 350
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 3 cut(s) 98, 210, 250
HpyAV CCTTC 3 cut(s) 50, 310, 436
HpyCH4III ACNGT 3 cut(s) 109, 396, 471
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 184, 430
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 262, 386
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 346, 372, 463
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 5 cut(s) 92, 114, 226, 347, 363
Lsp1109I GCAGC 2 cut(s) 162, 442
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 358
MalI GATC 3 cut(s) 348, 374, 465
MboI GATC 3 cut(s) 346, 372, 463
MboII GAAGA 4 cut(s) 151, 182, 247, 473
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 31
MluI ACGCGT 1 cut(s) 203
MlyI GAGTC 2 cut(s) 61, 263
MmeI TCCRAC 1 cut(s) 384
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 3 cut(s) 79, 334, 350
MspR9I CCNGG 2 cut(s) 79, 334
MvnI CGCG 3 cut(s) 205, 250, 311
MwoI GCNNNNNNNGC 3 cut(s) 88, 184, 430
NciI CCSGG 2 cut(s) 79, 334
NdeII GATC 3 cut(s) 346, 372, 463
NlaIII CATG 2 cut(s) 262, 386
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 358
NspV TTCGAA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 181, 436
PkrI GCNGC 3 cut(s) 177, 189, 432
PleI GAGTC 2 cut(s) 61, 263
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 2 cut(s) 61, 263
Ppu21I YACGTR 1 cut(s) 133
PspCI CACGTG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 98, 331
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 3 cut(s) 176, 188, 431
Sau3AI GATC 3 cut(s) 346, 372, 463
Sau96I GGNCC 2 cut(s) 98, 331
SchI GAGTC 2 cut(s) 61, 263
ScrFI CCNGG 2 cut(s) 79, 334
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 42, 135, 177, 414
SfaNI GCATC 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 3 cut(s) 187, 250, 453
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 77, 332
TaaI ACNGT 3 cut(s) 109, 396, 471
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 65, 229, 324, 339
TatI WGTACW 1 cut(s) 391
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 2 cut(s) 181, 436
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 175, 430
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 3 cut(s) 35, 281, 359
TspRI CASTG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.