Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0012545

Physical Location & Seq

Genomic Coordinates Forward (+)

82100 .. 83470

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggtctgtagattatcgactttgctgttgaacgtatgcatatcttcattttgtaaagtccggctattggggagagcggaggccgttataattgatggtataagattaggggtgattccagatgtagtcacttacaatactttggttcatgcatattgtcagtttgttagcgtagatgcggcttattccgttgttcatagaatgaaagaagctgggataagtccagatgtcgttacttacaattctttgatatccggggccaccaggaatcacttattatctcgagtcctggatctgtttgaggaaatgttacaggaaggtatacatcctgatgtgtggagttacaatattctgatgcactgtttctttaagttagggaaacctgatgaagccaacagagtcttccaggatattttacttagcgacctcactcctcatgcagctacatttaatattatgattaatggcctttgtaaaaatgggtacacggacaatgctcttatgttatttaggaatttacaacgtcatggatttgttcccccgttagtgacgtacaatattcttatcagtgggctttgcaaggcacgtagagtggggcaagcgaggagaattctaaaggaccttggagaatcaagtcataagccaaatgccgtaacctacactacagttatgagttgctgctttaggtctaagcaatacgaccaaggacttgagattatgtcagagatgaagagtaaagggtatacatttgacggctttgcgtactgcacagtcattgctgctttacttaagactggaaggatggaaggagcaaatgctttcatggaacagatgatgaatagtggcattgaaatggatttggtgtcttataacaccttacttaataagctttgtaaagaaggcaaggttgaagctgcctataagttgttggatgaaatagagaatgggggccttttgtgtgataagtatacccatacaatcatgattgatggattgtgtaaggcgggcaatattgctggtgctcaacaacatttacattatatgaatatgatgggattccaggaaaacttggttgcctttaactgtctgattgatggcttgggtaaagctggtgaaattgatcgtgcaatggaattgtacaattcaatggaaactagggattcttttacctatgactccttggtgctcaatctttgcaaggctggaagggtcctttgtgcatctaagcttatgatgaaatgtttaagagagggaatgatattactctactctaccaggcgagcactccttgatgggcttcgttcttcagggtttacaaatgaagcaagaaagcttcaatcaaaaattcggttagctcggctgttacgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

456

Amino Acids

51.08

Weight (kDa)

8.56

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46680
fragaria_vesca	FvH4_6g27690
malus_domestica	MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica	Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis	pycom07g04330
rosa_chinensis	RchiOBHm_Chr2g0130841
rosa_laevigata	RLG00000019152
rosa_multiflora	Rmu_sc0003629.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa	Rorug02G0293500 Rorug02G0293600
rosa_samantha	Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana	Rw2G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	89, 870
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	3 cut(s)	322, 743, 968
AciI	CCGC	3 cut(s)	77, 179, 1004
AclWI	GGATC	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	514, 609, 1344
AcuI	CTGAAG	1 cut(s)	1290
AfaI	GTAC	4 cut(s)	485, 554, 764, 1139
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	5 cut(s)	31, 851, 911, 1146, 1337
AjnI	CCWGG	5 cut(s)	263, 288, 405, 1059, 1274
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	8 cut(s)	212, 443, 889, 914, 1109, 1228, 1333, 1355
AluI	AGCT	8 cut(s)	212, 443, 889, 914, 1109, 1228, 1333, 1355
Alw21I	GWGCWC	3 cut(s)	1024, 1188, 1285
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	4 cut(s)	81, 258, 466, 949
ApeKI	GCWGC	4 cut(s)	440, 678, 779, 914
ApoI	RAATTY	3 cut(s)	514, 609, 1344
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	4 cut(s)	258, 619, 949, 1210
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	124, 1124
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	2 cut(s)	619, 1210
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	3 cut(s)	1024, 1188, 1285
BbvI	GCAGC	4 cut(s)	452, 665, 766, 901
BccI	CCATC	6 cut(s)	89, 796, 983, 1045, 1088, 1286
BceAI	ACGGC	3 cut(s)	68, 635, 769
BciT130I	CCWGG	5 cut(s)	265, 290, 407, 1061, 1276
BcnI	CCSGG	1 cut(s)	256
BfaI	CTAG	1 cut(s)	1155
BfmI	CTRYAG	2 cut(s)	7, 663
BfrI	CTTAAG	1 cut(s)	788
BisI	GCNGC	5 cut(s)	180, 441, 679, 780, 915
BlsI	GCNGC	5 cut(s)	181, 442, 680, 781, 916
Bme1390I	CCNGG	6 cut(s)	256, 265, 290, 407, 1061, 1276
Bme18I	GGWCC	2 cut(s)	619, 1210
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	258, 619, 949, 1210
BmiI	GGNNCC	3 cut(s)	259, 950, 1211
BmrFI	CCNGG	6 cut(s)	256, 265, 290, 407, 1061, 1276
BmsI	GCATC	3 cut(s)	166, 345, 1229
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	256
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	4 cut(s)	255, 622, 703, 1179
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	799
Bse3DI	GCAATG	2 cut(s)	774, 1134
BseBI	CCWGG	5 cut(s)	265, 290, 407, 1061, 1276
BseDI	CCNNGG	4 cut(s)	255, 622, 703, 1179
BseGI	GGATG	3 cut(s)	325, 807, 937
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	774, 1134
BseNI	ACTGG	1 cut(s)	799
BseRI	GAGGAG	2 cut(s)	423, 619
BseXI	GCAGC	4 cut(s)	452, 665, 766, 901
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	751
BshFI	GGCC	4 cut(s)	83, 260, 468, 951
BsiHKAI	GWGCWC	3 cut(s)	1024, 1188, 1285
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	61, 255
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	4 cut(s)	83, 260, 468, 951
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	3 cut(s)	1024, 1188, 1285
Bsp1407I	TGTACA	1 cut(s)	1137
Bsp143I	GATC	2 cut(s)	292, 1120
BspACI	CCGC	3 cut(s)	77, 179, 1004
BspANI	GGCC	4 cut(s)	83, 260, 468, 951
BspHI	TCATGA	1 cut(s)	981
BspLI	GGNNCC	3 cut(s)	259, 950, 1211
BspPI	GGATC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	2 cut(s)	774, 1134
BsrGI	TGTACA	1 cut(s)	1137
BsrI	ACTGG	1 cut(s)	799
BssECI	CCNNGG	4 cut(s)	255, 622, 703, 1179
BssMI	GATC	2 cut(s)	292, 1120
BssNAI	GTATAC	3 cut(s)	323, 744, 969
BssT1I	CCWWGG	3 cut(s)	622, 703, 1179
Bst1107I	GTATAC	3 cut(s)	323, 744, 969
Bst2UI	CCWGG	5 cut(s)	265, 290, 407, 1061, 1276
Bst4CI	ACNGT	4 cut(s)	362, 667, 772, 1085
Bst6I	CTCTTC	1 cut(s)	725
BstAFI	CTTAAG	1 cut(s)	788
BstAUI	TGTACA	1 cut(s)	1137
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	600, 1006, 1281
BstDEI	CTNAG	3 cut(s)	419, 690, 1224
BstF5I	GGATG	3 cut(s)	325, 807, 937
BstKTI	GATC	2 cut(s)	295, 1123
BstMBI	GATC	2 cut(s)	292, 1120
BstNI	CCWGG	5 cut(s)	265, 290, 407, 1061, 1276
BstSCI	CCNGG	6 cut(s)	254, 263, 288, 405, 1059, 1274
BstSFI	CTRYAG	2 cut(s)	7, 663
BstV1I	GCAGC	4 cut(s)	452, 665, 766, 901
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	3 cut(s)	323, 744, 969
BsuRI	GGCC	4 cut(s)	83, 260, 468, 951
BtsCI	GGATG	3 cut(s)	325, 807, 937
BtsIMutI	CAGTG	2 cut(s)	358, 574
Cac8I	GCNNGC	3 cut(s)	600, 1006, 1281
CciI	TCATGA	1 cut(s)	981
Cfr13I	GGNCC	4 cut(s)	258, 619, 949, 1210
Csp6I	GTAC	4 cut(s)	484, 553, 763, 1138
CviAII	CATG	5 cut(s)	149, 437, 527, 823, 982
CviQI	GTAC	4 cut(s)	484, 553, 763, 1138
DdeI	CTNAG	3 cut(s)	419, 690, 1224
DpnI	GATC	2 cut(s)	294, 1122
DpnII	GATC	2 cut(s)	292, 1120
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco130I	CCWWGG	3 cut(s)	622, 703, 1179
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	619, 1210
Eco57I	CTGAAG	1 cut(s)	1290
Eco88I	CYCGRG	1 cut(s)	282
EcoO109I	RGGNCCY	3 cut(s)	619, 949, 1210
EcoRI	GAATTC	1 cut(s)	609
EcoRII	CCWGG	5 cut(s)	263, 288, 405, 1059, 1274
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	622, 703, 1179
EcoT22I	ATGCAT	2 cut(s)	41, 154
ErhI	CCWWGG	3 cut(s)	622, 703, 1179
FaeI	CATG	5 cut(s)	152, 440, 530, 826, 985
FatI	CATG	5 cut(s)	148, 436, 526, 822, 981
FauI	CCCGC	1 cut(s)	997
FblI	GTMKAC	3 cut(s)	322, 743, 968
Fnu4HI	GCNGC	5 cut(s)	180, 441, 679, 780, 915
FokI	GGATG	3 cut(s)	312, 814, 944
Fsp4HI	GCNGC	5 cut(s)	180, 441, 679, 780, 915
FspBI	CTAG	1 cut(s)	1155
GluI	GCNGC	5 cut(s)	180, 441, 679, 780, 915
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	83, 260, 468, 951
HapII	CCGG	2 cut(s)	61, 255
Hin1II	CATG	5 cut(s)	152, 440, 530, 826, 985
HindIII	AAGCTT	3 cut(s)	887, 1226, 1331
HinfI	GANTC	8 cut(s)	115, 268, 285, 399, 629, 1056, 1160, 1175
HpaII	CCGG	2 cut(s)	61, 255
HphI	GGTGA	2 cut(s)	124, 1124
Hpy166II	GTNNAC	5 cut(s)	323, 486, 744, 969, 1314
Hpy188I	TCNGA	3 cut(s)	354, 724, 1089
Hpy188III	TCNNGA	5 cut(s)	119, 224, 282, 329, 982
Hpy8I	GTNNAC	5 cut(s)	323, 486, 744, 969, 1314
HpyAV	CCTTC	5 cut(s)	311, 792, 800, 893, 1200
HpyCH4III	ACNGT	4 cut(s)	362, 667, 772, 1085
HpyCH4IV	ACGT	5 cut(s)	33, 523, 551, 586, 1366
HpyCH4V	TGCA	9 cut(s)	39, 152, 358, 440, 579, 768, 1127, 1197, 1220
HpyF3I	CTNAG	3 cut(s)	419, 690, 1224
HpySE526I	ACGT	5 cut(s)	33, 523, 551, 586, 1366
Hsp92II	CATG	5 cut(s)	152, 440, 530, 826, 985
Kzo9I	GATC	2 cut(s)	292, 1120
LmnI	GCTCC	1 cut(s)	809
Lsp1109I	GCAGC	4 cut(s)	452, 665, 766, 901
LweI	GCATC	3 cut(s)	166, 345, 1229
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	5 cut(s)	33, 523, 551, 586, 1366
MaeIII	GTNAC	7 cut(s)	127, 232, 309, 341, 547, 652, 1362
MalI	GATC	2 cut(s)	294, 1122
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	2 cut(s)	292, 1120
MboII	GAAGA	4 cut(s)	36, 394, 742, 1296
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	1024, 1188, 1285
MluCI	AATT	8 cut(s)	90, 241, 514, 609, 1116, 1133, 1141, 1344
MlyI	GAGTC	3 cut(s)	294, 408, 1169
MmeI	TCCRAC	1 cut(s)	909
MnlI	CCTC	6 cut(s)	73, 295, 437, 444, 597, 1243
Mph1103I	ATGCAT	2 cut(s)	41, 154
MseI	TTAA	8 cut(s)	369, 450, 462, 789, 882, 1080, 1244, 1369
MslI	CAYNNNNRTG	2 cut(s)	330, 851
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	2 cut(s)	61, 255
MspR9I	CCNGG	6 cut(s)	256, 265, 290, 407, 1061, 1276
MvaI	CCWGG	5 cut(s)	265, 290, 407, 1061, 1276
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	292, 1120
NlaIII	CATG	5 cut(s)	152, 440, 530, 826, 985
NlaIV	GGNNCC	3 cut(s)	259, 950, 1211
NmeAIII	GCCGAG	1 cut(s)	1336
NmuCI	GTSAC	2 cut(s)	127, 547
NsiI	ATGCAT	2 cut(s)	41, 154
PaeR7I	CTCGAG	1 cut(s)	282
PagI	TCATGA	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	1363
PfeI	GAWTC	5 cut(s)	115, 268, 629, 1056, 1160
PfoI	TCCNGGA	3 cut(s)	288, 405, 1059
PkrI	GCNGC	5 cut(s)	181, 442, 680, 781, 916
PleI	GAGTC	3 cut(s)	293, 407, 1169
PpsI	GAGTC	3 cut(s)	293, 407, 1169
Ppu21I	YACGTR	1 cut(s)	587
PpuMI	RGGWCCY	2 cut(s)	619, 1210
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	2 cut(s)	89, 870
Psp5II	RGGWCCY	2 cut(s)	619, 1210
Psp6I	CCWGG	5 cut(s)	263, 288, 405, 1059, 1274
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	5 cut(s)	263, 288, 405, 1059, 1274
PspN4I	GGNNCC	3 cut(s)	259, 950, 1211
PspPI	GGNCC	4 cut(s)	258, 619, 949, 1210
PspPPI	RGGWCCY	2 cut(s)	619, 1210
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	4 cut(s)	485, 554, 764, 1139
RsaNI	GTAC	4 cut(s)	484, 553, 763, 1138
RseI	CAYNNNNRTG	2 cut(s)	330, 851
SaqAI	TTAA	8 cut(s)	369, 450, 462, 789, 882, 1080, 1244, 1369
SatI	GCNGC	5 cut(s)	180, 441, 679, 780, 915
Sau3AI	GATC	2 cut(s)	292, 1120
Sau96I	GGNCC	4 cut(s)	258, 619, 949, 1210
SchI	GAGTC	3 cut(s)	294, 408, 1169
ScrFI	CCNGG	6 cut(s)	256, 265, 290, 407, 1061, 1276
SduI	GDGCHC	3 cut(s)	1024, 1188, 1285
SfaNI	GCATC	3 cut(s)	166, 345, 1229
SfcI	CTRYAG	2 cut(s)	7, 663
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	619, 1210
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	330, 851
SmlI	CTYRAG	3 cut(s)	282, 710, 788
SmoI	CTYRAG	3 cut(s)	282, 710, 788
Sse9I	AATT	8 cut(s)	90, 241, 514, 609, 1116, 1133, 1141, 1344
SsiI	CCGC	3 cut(s)	77, 179, 1004
SspI	AATATT	4 cut(s)	349, 454, 559, 1012
SspMI	CTAG	1 cut(s)	1155
StyD4I	CCNGG	6 cut(s)	254, 263, 288, 405, 1059, 1274
StyI	CCWWGG	3 cut(s)	622, 703, 1179
TaaI	ACNGT	4 cut(s)	362, 667, 772, 1085
TaiI	ACGT	5 cut(s)	36, 526, 554, 589, 1369
TaqI	TCGA	2 cut(s)	17, 283
TasI	AATT	8 cut(s)	90, 241, 514, 609, 1116, 1133, 1141, 1344
TatI	WGTACW	1 cut(s)	1137
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	5 cut(s)	115, 268, 629, 1056, 1160
Tru1I	TTAA	8 cut(s)	369, 450, 462, 789, 882, 1080, 1244, 1369
Tru9I	TTAA	8 cut(s)	369, 450, 462, 789, 882, 1080, 1244, 1369
TscAI	CASTG	2 cut(s)	365, 574
TseFI	GTSAC	2 cut(s)	127, 547
TseI	GCWGC	4 cut(s)	440, 678, 779, 914
Tsp45I	GTSAC	2 cut(s)	127, 547
TspGWI	ACGGA	2 cut(s)	178, 503
TspRI	CASTG	2 cut(s)	365, 574
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	619, 1210
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	3 cut(s)	514, 609, 1344
XhoI	CTCGAG	1 cut(s)	282
XmiI	GTMKAC	3 cut(s)	322, 743, 968
XspI	CTAG	1 cut(s)	1155
Zsp2I	ATGCAT	2 cut(s)	41, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.