Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012545

Physical Location & Seq

Genomic Coordinates Reverse (-)

5087660 .. 5093438

Gene Structure 5779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1055100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATGGTTTCTGGATTATCGACTAGGTTGTTGAACATATGCATAGCTTCGTTTTGTAAGTCCCGGCTACTGGAGAGAGCAGAAGCCGTTATAATTGATGGCATAAGATTGGGGGTGATTCCAGATGTGGTAACTTACAATACTTTGCTCAATGCCTATTCTCGGTTTGTTAGCTTGGATTCAGCTTATTCTGTTGTTCATAGAATGAAAGAGGCTGGGATTAGTCCAGATGTCATTACATACAATTCTTTGTTATCTGGGGCCACCAGGAATTGCCTATTATCACAATCTCTGGATCTGTTTGAGGAAATGTTACAAGCGGGCATACATCCTAATGTATGGAGTTACAATATTCTGATGCATTGTTTCTTTAAGTTAGGAAAACCTGATGAAGCCAACAGAGTTTTTCAGGATATTTTACTTCGCAATCTCACTCCCCACCCAGCTACGTTTAACATAATGATTAATGGCCTTTGTAAAAATGAATACATTGATAATGCCCTTATGTTATTTAGGAATTTGCAACGTCATGGATTTGTTCCCCGATTAGTGACGTACAATATTCTTATCCACGGGCTATGCAAGGCACGCAGATTGGGGCAAGCAAGAAAAATGCTAAAGGAACTGGGGGAATCAGGTTATGAGCCAAATGCCATAACCTACACTACAGTTATGAAATGCTGCTTTAAGTTTAAGCAGTATGACGAAGCGCTCGAGATTATGTCAGAGATGAAGAGTAAAGGGTATACTTTTGATGGCTTTGCAAACTGCACAGTTGTTGCTGCTTTAGTTAAGACTGGGAGGATAGAAGAGGCAAATGCTTGCATGGAACAGACAATGAGAAATGGCATTGAACTTGATTTAGCGGCTTATAACACTTTACTTAATATGTATTGTAGAGAAGGTAAGTTTGAAGCTGCCTATAAGTTGATGGATGAAATAGAGAATGGAGGTCTGCGGTGTGACAAGTATACCCACACAATTATAATTGATGGATTGTGCAAGGCTGGTAATATTATCGGGGCTGAACAACATTTACAATATATGAAAATGATTGGCTTCCGTGAAAACTTGGTTGCCTTCAACTGCATGATTGATGGCTTGTGTAAAGCTGGTCAAATCGATCGTGCAATGGACTTGTATAAATCAATGGAGACTAAAGATTCCTTTACCTACACCTCTTTGGTGCACAATCTTTGCAAGGCTGGAAGGTTCCGTTGTGCGTCCAAGCTTATGATGAAATGTTTAAGAGATGGCAAGAAAATACTCAAGGCTACCCAACGAGCTGTCCTTGATGGTCTTCATAGTACGGGGTATACAGATGAAGCAAGGAAGCTTCGGTGGAAAATTCAAGTGGCTAGAATATTACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

458

Amino Acids

51.8

Weight (kDa)

8.92

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	12 - 54	5.4e-06	PPR repeat family
PPR_3	PF13812	36 - 86	1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	38 - 70	2e-06	PPR repeat
PPR_2	PF13041	41 - 87	2.7e-14	PPR repeat family
PPR_2	PF13041	76 - 125	4.1e-13	PPR repeat family
PPR_long	PF17177	94 - 203	3.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	100 - 156	2.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	108 - 137	3.1e-06	PPR repeat
PPR_2	PF13041	111 - 160	2e-13	PPR repeat family
TPR_24	PF23276	127 - 241	7.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	143 - 172	2.1e-07	PPR repeat
PPR_2	PF13041	149 - 195	4.3e-14	PPR repeat family
PPR	PF01535	150 - 179	2.2e-06	PPR repeat
TPR_24	PF23276	170 - 272	3.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	170 - 228	3.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	178 - 208	3.8e-09	PPR repeat
PPR_2	PF13041	182 - 230	5.4e-14	PPR repeat family
PPR	PF01535	184 - 213	4.9e-06	PPR repeat
PPR_long	PF17177	202 - 317	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	219 - 248	7.6e-07	PPR repeat
TPR_24	PF23276	281 - 384	1.3e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	282 - 314	3.7e-08	PPR repeat
PPR_2	PF13041	287 - 335	1.5e-16	PPR repeat family
PPR	PF01535	290 - 318	5.7e-06	PPR repeat
PPR_1	PF12854	318 - 350	4e-06	PPR repeat
PPR_1	PF12854	357 - 385	1.4e-08	PPR repeat
PPR_2	PF13041	357 - 401	1.8e-11	PPR repeat family
PPR	PF01535	359 - 387	7.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46680
fragaria_vesca	FvH4_6g27690
malus_domestica	MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica	Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis	pycom07g04330
rosa_chinensis	RchiOBHm_Chr2g0130841
rosa_laevigata	RLG00000019152
rosa_multiflora	Rmu_sc0003629.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa	Rorug02G0293500 Rorug02G0293600
rosa_samantha	Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana	Rw2G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	92, 873, 986
AccI	GTMKAC	3 cut(s)	746, 971, 1316
AciI	CCGC	3 cut(s)	320, 866, 958
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	517, 1347
AfaI	GTAC	2 cut(s)	557, 1309
AfeI	AGCGCT	1 cut(s)	711
AfiI	CCNNNNNNNGG	2 cut(s)	70, 162
AgsI	TTSAA	5 cut(s)	34, 854, 914, 1084, 1352
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	9 cut(s)	47, 174, 185, 446, 917, 1112, 1231, 1286, 1336
AluI	AGCT	9 cut(s)	47, 174, 185, 446, 917, 1112, 1231, 1286, 1336
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	1 cut(s)	1148
Alw44I	GTGCAC	1 cut(s)	1187
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	713
Aor51HI	AGCGCT	1 cut(s)	711
AoxI	GGCC	2 cut(s)	261, 469
ApaLI	GTGCAC	1 cut(s)	1187
ApeKI	GCWGC	3 cut(s)	681, 782, 917
ApoI	RAATTY	2 cut(s)	517, 1347
AseI	ATTAAT	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	1191
BbsI	GAAGAC	1 cut(s)	1292
Bbv12I	GWGCWC	1 cut(s)	1191
BbvI	GCAGC	3 cut(s)	668, 769, 904
BccI	CCATC	7 cut(s)	92, 749, 925, 986, 1091, 1247, 1289
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	1148
BfaI	CTAG	2 cut(s)	24, 1359
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	713
BisI	GCNGC	4 cut(s)	682, 783, 867, 918
BlsI	GCNGC	4 cut(s)	683, 784, 868, 919
Bme1390I	CCNGG	2 cut(s)	64, 268
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	262, 1214
BmrFI	CCNGG	2 cut(s)	64, 268
BmrI	ACTGGG	2 cut(s)	635, 807
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	2 cut(s)	635, 807
BpiI	GAAGAC	1 cut(s)	1292
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	1253
BpuMI	CCSGG	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	1122
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 162
Bse1I	ACTGG	3 cut(s)	75, 630, 802
Bse3DI	GCAATG	1 cut(s)	1137
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	1122
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	328, 940
BseLI	CCNNNNNNNGG	2 cut(s)	70, 162
BseMI	GCAATG	1 cut(s)	1137
BseNI	ACTGG	3 cut(s)	75, 630, 802
BseSI	GKGCMC	1 cut(s)	1191
BseXI	GCAGC	3 cut(s)	668, 769, 904
BseYI	CCCAGC	2 cut(s)	215, 442
BsgI	GTGCAG	1 cut(s)	754
Bsh1285I	CGRYCG	1 cut(s)	1126
BshFI	GGCC	2 cut(s)	263, 471
BshVI	ATCGAT	1 cut(s)	1122
BsiEI	CGRYCG	1 cut(s)	1126
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	70, 162
BsmAI	GTCTC	1 cut(s)	1148
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	263, 471
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	1191
Bsp143I	GATC	2 cut(s)	295, 1123
BspACI	CCGC	3 cut(s)	320, 866, 958
BspANI	GGCC	2 cut(s)	263, 471
BspDI	ATCGAT	1 cut(s)	1122
BspLI	GGNNCC	2 cut(s)	262, 1214
BspPI	GGATC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	1137
BsrI	ACTGG	3 cut(s)	75, 630, 802
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	295, 1123
BssNAI	GTATAC	3 cut(s)	747, 972, 1317
Bst1107I	GTATAC	3 cut(s)	747, 972, 1317
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	670, 775
Bst6I	CTCTTC	2 cut(s)	728, 804
BstC8I	GCNNGC	4 cut(s)	322, 589, 603, 823
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	328, 940
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	2 cut(s)	298, 1126
BstMAI	GTCTC	1 cut(s)	1148
BstMBI	GATC	2 cut(s)	295, 1123
BstMCI	CGRYCG	1 cut(s)	1126
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	62, 266
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	1 cut(s)	1191
BstV1I	GCAGC	3 cut(s)	668, 769, 904
BstV2I	GAAGAC	1 cut(s)	1292
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BstZ17I	GTATAC	3 cut(s)	747, 972, 1317
Bsu15I	ATCGAT	1 cut(s)	1122
BsuRI	GGCC	2 cut(s)	263, 471
BsuTUI	ATCGAT	1 cut(s)	1122
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	328, 940
Cac8I	GCNNGC	4 cut(s)	322, 589, 603, 823
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	261
ClaI	ATCGAT	1 cut(s)	1122
CseI	GACGC	1 cut(s)	1212
Csp6I	GTAC	2 cut(s)	556, 1308
CviAII	CATG	3 cut(s)	530, 826, 1090
CviQI	GTAC	2 cut(s)	556, 1308
DpnI	GATC	2 cut(s)	297, 1125
DpnII	GATC	2 cut(s)	295, 1123
Eam1104I	CTCTTC	2 cut(s)	728, 804
EarI	CTCTTC	2 cut(s)	728, 804
Eco47III	AGCGCT	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	266
EcoT22I	ATGCAT	2 cut(s)	44, 363
FaeI	CATG	3 cut(s)	533, 829, 1093
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	529, 825, 1089
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	38
FblI	GTMKAC	3 cut(s)	746, 971, 1316
Fnu4HI	GCNGC	4 cut(s)	682, 783, 867, 918
FokI	GGATG	2 cut(s)	315, 947
Fsp4HI	GCNGC	4 cut(s)	682, 783, 867, 918
FspBI	CTAG	2 cut(s)	24, 1359
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	4 cut(s)	682, 783, 867, 918
GsaI	CCCAGC	2 cut(s)	219, 446
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	2 cut(s)	263, 471
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	1212
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	3 cut(s)	533, 829, 1093
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HindIII	AAGCTT	2 cut(s)	1229, 1334
HinfI	GANTC	4 cut(s)	118, 179, 632, 1163
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	4 cut(s)	747, 972, 1189, 1317
Hpy188I	TCNGA	2 cut(s)	357, 727
Hpy188III	TCNNGA	6 cut(s)	12, 122, 227, 293, 410, 715
Hpy8I	GTNNAC	4 cut(s)	747, 972, 1189, 1317
HpyAV	CCTTC	3 cut(s)	896, 1090, 1203
HpyCH4III	ACNGT	2 cut(s)	670, 775
HpyCH4IV	ACGT	4 cut(s)	449, 526, 554, 1369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpySE526I	ACGT	4 cut(s)	449, 526, 554, 1369
Hsp92II	CATG	3 cut(s)	533, 829, 1093
HspAI	GCGC	1 cut(s)	710
Kzo9I	GATC	2 cut(s)	295, 1123
Lsp1109I	GCAGC	3 cut(s)	668, 769, 904
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	24, 1359
MaeII	ACGT	4 cut(s)	449, 526, 554, 1369
MaeIII	GTNAC	5 cut(s)	130, 312, 344, 550, 962
MalI	GATC	2 cut(s)	297, 1125
MboI	GATC	2 cut(s)	295, 1123
MboII	GAAGA	3 cut(s)	745, 821, 1292
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	1191
MluCI	AATT	7 cut(s)	93, 244, 271, 517, 981, 987, 1347
MnlI	CCTC	6 cut(s)	205, 298, 795, 805, 944, 1189
Mph1103I	ATGCAT	2 cut(s)	44, 363
MseI	TTAA	9 cut(s)	372, 453, 465, 687, 693, 792, 885, 1247, 1372
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	64, 268
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	588
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	295, 1123
NlaIII	CATG	3 cut(s)	533, 829, 1093
NlaIV	GGNNCC	2 cut(s)	262, 1214
NmuCI	GTSAC	2 cut(s)	550, 962
NsiI	ATGCAT	2 cut(s)	44, 363
PaeR7I	CTCGAG	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	118, 179, 632, 1163
PkrI	GCNGC	4 cut(s)	683, 784, 868, 919
Ple19I	CGATCG	1 cut(s)	1126
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	3 cut(s)	92, 873, 986
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	2 cut(s)	215, 442
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	262, 1214
PspPI	GGNCC	1 cut(s)	261
PsrI	GAACNNNNNNTAC	2 cut(s)	1020, 1052
PsuI	RGATCY	1 cut(s)	295
PvuI	CGATCG	1 cut(s)	1126
RsaI	GTAC	2 cut(s)	557, 1309
RsaNI	GTAC	2 cut(s)	556, 1308
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	9 cut(s)	372, 453, 465, 687, 693, 792, 885, 1247, 1372
SatI	GCNGC	4 cut(s)	682, 783, 867, 918
Sau3AI	GATC	2 cut(s)	295, 1123
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	64, 268
SduI	GDGCHC	1 cut(s)	1191
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	666
Sfr274I	CTCGAG	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	713, 1268
SmoI	CTYRAG	2 cut(s)	713, 1268
Sse9I	AATT	7 cut(s)	93, 244, 271, 517, 981, 987, 1347
SsiI	CCGC	3 cut(s)	320, 866, 958
SspI	AATATT	4 cut(s)	352, 562, 1015, 1365
SspMI	CTAG	2 cut(s)	24, 1359
StyD4I	CCNGG	2 cut(s)	62, 266
TaaI	ACNGT	2 cut(s)	670, 775
TaiI	ACGT	4 cut(s)	452, 529, 557, 1372
TaqI	TCGA	3 cut(s)	20, 714, 1122
TasI	AATT	7 cut(s)	93, 244, 271, 517, 981, 987, 1347
TauI	GCSGC	1 cut(s)	869
TfiI	GAWTC	4 cut(s)	118, 179, 632, 1163
Tru1I	TTAA	9 cut(s)	372, 453, 465, 687, 693, 792, 885, 1247, 1372
Tru9I	TTAA	9 cut(s)	372, 453, 465, 687, 693, 792, 885, 1247, 1372
TseFI	GTSAC	2 cut(s)	550, 962
TseI	GCWGC	3 cut(s)	681, 782, 917
Tsp45I	GTSAC	2 cut(s)	550, 962
TspGWI	ACGGA	2 cut(s)	1052, 1205
VneI	GTGCAC	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	517, 1347
XhoI	CTCGAG	1 cut(s)	713
XmiI	GTMKAC	3 cut(s)	746, 971, 1316
XspI	CTAG	2 cut(s)	24, 1359
Zsp2I	ATGCAT	2 cut(s)	44, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.