Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012545

Physical Location & Seq

Genomic Coordinates Reverse (-)

32381932 .. 32382873

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0293600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTCACCGGGAAATCAAGCGACCCAGAGCGTCTGCAGCAGCTGAAGGCCTTCGACGACTCCAAAACTGGTGTCAAAGGGATCGTCGATGCCGGAATCACCAAACTCCCACCAATTTTCGTACGATTTCAGGTGGTGAACCATGGGATACCCAAGACAGTGATGGAGGAGATGTTGCAGGCGGCGCGTGTGTTTCACGAGCTGCTGAGGGAGGAGAAGGCGGAGTACTATTGTAGGGAGATGGGGATGAAGGACACTTTGCAGTGCATCGTAAGTGACGAGCAGTTTGATCCTCAAGAAATTCCTCTCGTTTGCAGTCATTACTATCCACCATGCCCACAGCCTGAAGTGGCTATTGGCACTGCCGAACACTCGGATCCTGATTTTATGACCATCCTACTTCAAGATCAAATTGGTGGACTTCAAGTTTTGTACCAAAATCAGTGGATTGATGTTCTTCCTGTACCTGGAGCTCTAGTGGTAAACATCGGAGGAGATTTCTTACAGGCAAGTTTTCTATATCATATATATTCACAAAGGTTGTTTGTTATTGTTTCACTACATATTGGAGTTACATATATACAAGTAATTAAATTGCATCTTGTACGTACACAACTTTTTCTCTTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

210

Amino Acids

23.81

Weight (kDa)

5.29

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 78	2.1e-06	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	105 - 167	5.1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46680
fragaria_vesca	FvH4_6g27690
malus_domestica	MD07G1055100.v1.1 MD15G1427800.v1.1
prunus_persica	Prupe.3G114500_v2.0.a1 Prupe.3G114500_v2.0.a1 Prupe.4G280300_v2.0.a1
pyrus_communis	pycom07g04330
rosa_chinensis	RchiOBHm_Chr2g0130841
rosa_laevigata	RLG00000019152
rosa_multiflora	Rmu_sc0003629.1_g000016
rosa_roxburghii	Rroxscaffold_2G00113500 Rroxscaffold_4G00318090
rosa_rugosa	Rorug02G0293500 Rorug02G0293600
rosa_samantha	Rh2AG344900 Rh2BG353300 Rh2DG371200
rosa_wichuraiana	Rw2G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	187
AciI	CCGC	2 cut(s)	182, 221
AclWI	GGATC	4 cut(s)	89, 284, 371, 384
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	65, 366
AfaI	GTAC	6 cut(s)	123, 227, 434, 465, 606, 610
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	404, 425
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	3 cut(s)	43, 202, 473
AluI	AGCT	3 cut(s)	43, 202, 473
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	4 cut(s)	89, 284, 371, 384
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	37, 40, 202
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	6 cut(s)	57, 69, 89, 101, 269, 301
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	91, 148
BamHI	GGATCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	49, 52, 189
BccI	CCATC	3 cut(s)	157, 235, 401
BciT130I	CCWGG	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	38, 41, 183, 203
BlsI	GCNGC	4 cut(s)	39, 42, 184, 204
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	10, 468
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	10, 468
BmsI	GCATC	3 cut(s)	79, 276, 607
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	252, 393
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	3 cut(s)	182, 227, 507
BseXI	GCAGC	3 cut(s)	49, 52, 189
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	9, 93
BsiWI	CGTACG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	467
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	81, 289, 376, 406
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	2 cut(s)	182, 221
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	4 cut(s)	89, 284, 371, 384
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	4 cut(s)	81, 289, 376, 406
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	252, 393
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	4 cut(s)	84, 292, 379, 409
BstMBI	GATC	4 cut(s)	81, 289, 376, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 184
BstNI	CCWGG	1 cut(s)	468
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	8, 466
BstSFI	CTRYAG	1 cut(s)	35
BstSNI	TACGTA	1 cut(s)	608
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	49, 52, 189
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	252, 393
BtsI	GCAGTG	2 cut(s)	269, 360
BtsIMutI	CAGTG	4 cut(s)	165, 269, 360, 449
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	43
CfoI	GCGC	1 cut(s)	187
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	6 cut(s)	122, 226, 433, 464, 605, 609
CspCI	CAANNNNNGTGG	2 cut(s)	425, 460
CviAII	CATG	2 cut(s)	143, 333
CviJI	RGCY	6 cut(s)	43, 50, 202, 343, 353, 473
CviKI_1	RGCY	6 cut(s)	43, 50, 202, 343, 353, 473
CviQI	GTAC	6 cut(s)	122, 226, 433, 464, 605, 609
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	4 cut(s)	83, 291, 378, 408
DpnII	GATC	4 cut(s)	81, 289, 376, 406
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	473
Eco105I	TACGTA	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	65, 366
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	473
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	146, 336
FatI	CATG	2 cut(s)	142, 332
Fnu4HI	GCNGC	4 cut(s)	38, 41, 183, 203
FokI	GGATG	2 cut(s)	259, 380
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	38, 41, 183, 203
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	38, 41, 183, 203
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	9, 93
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	146, 336
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	59, 96
HpaII	CCGG	2 cut(s)	9, 93
HphI	GGTGA	2 cut(s)	91, 148
Hpy166II	GTNNAC	4 cut(s)	139, 419, 484, 611
Hpy188I	TCNGA	2 cut(s)	376, 491
Hpy188III	TCNNGA	4 cut(s)	197, 296, 380, 404
Hpy8I	GTNNAC	4 cut(s)	139, 419, 484, 611
Hpy99I	CGWCG	2 cut(s)	59, 89
HpyAV	CCTTC	4 cut(s)	40, 61, 211, 244
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	6 cut(s)	37, 178, 262, 267, 315, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 184
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	2 cut(s)	146, 336
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	4 cut(s)	81, 289, 376, 406
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	3 cut(s)	49, 52, 189
LweI	GCATC	3 cut(s)	79, 276, 607
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	3 cut(s)	4, 275, 571
MalI	GATC	4 cut(s)	83, 291, 378, 408
MboI	GATC	4 cut(s)	81, 289, 376, 406
MboII	GAAGA	2 cut(s)	449, 616
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	5 cut(s)	114, 300, 411, 588, 593
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	6 cut(s)	160, 201, 205, 303, 315, 485
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	9, 93
MspR9I	CCNGG	2 cut(s)	10, 468
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	37, 184
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	4 cut(s)	81, 289, 376, 406
NlaIII	CATG	2 cut(s)	146, 336
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	4, 275
PceI	AGGCCT	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	96
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	39, 42, 184, 204
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	466
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	6 cut(s)	123, 227, 434, 465, 606, 610
RsaNI	GTAC	6 cut(s)	122, 226, 433, 464, 605, 609
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	4 cut(s)	38, 41, 183, 203
Sau3AI	GATC	4 cut(s)	81, 289, 376, 406
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	10, 468
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	7 cut(s)	45, 135, 204, 469, 475, 542, 610
SfaNI	GCATC	3 cut(s)	79, 276, 607
SfcI	CTRYAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SnaBI	TACGTA	1 cut(s)	608
Sse9I	AATT	5 cut(s)	114, 300, 411, 588, 593
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	2 cut(s)	182, 221
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	475
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	8, 466
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	2 cut(s)	54, 87
TasI	AATT	5 cut(s)	114, 300, 411, 588, 593
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	4 cut(s)	165, 269, 367, 449
TseFI	GTSAC	2 cut(s)	4, 275
TseI	GCWGC	3 cut(s)	37, 40, 202
Tsp45I	GTSAC	2 cut(s)	4, 275
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	4 cut(s)	165, 269, 367, 449
XapI	RAATTY	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.