FvH4_6g28520

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014769
Physical Location & Seq
Forward (+)
21975373 .. 21978378
3006 bp
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UTR
Exon/CDS
Intron
FvH4_6g28520.t1

Sequence Viewer

Length: 345 bp
ATGAGTGATGCATTTAGGTATCAGAAGAACCAGTACAATGTGTTTATGGTCAACAAAACCGGGTATGACAACTGCACCCTGGATAGTGCAGTAGGGAACTGGACCAGTGGCAAGGACTTCATACTCTTCAATGATTCCGGGAGATACTACTTCATTTGCGGTAACGGTCAGTGCTTCAATGGGATGAAAGTCTCTGTGCTCGTCCATCCTCTGCCCACGCCAACAGCTTCTCCATCTGCTACGAATTCTTCTTCAGACTCGGCTGGCCTGGTGGCTCCACGACTGGGATTTCGTGTTTTGGTGGCATCCTTGGCAGTGATGTGGTTTGGAGGTGCGTGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

115

Amino Acids

12.41

Weight (kDa)

8.52

Isoelectric Point (pI)

23.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 4 - 62 1.9e-11 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 130, 178
AjnI CCWGG 2 cut(s) 78, 267
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 244
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 61, 139
AvaII GGWCC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 2 cut(s) 213, 241
BciT130I CCWGG 2 cut(s) 80, 269
BcnI CCSGG 2 cut(s) 61, 139
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 343
Bme1390I CCNGG 4 cut(s) 61, 80, 139, 269
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 4 cut(s) 61, 80, 139, 269
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 61, 139
BsaJI CCNNGG 2 cut(s) 78, 309
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 4 cut(s) 31, 104, 105, 288
BseBI CCWGG 2 cut(s) 80, 269
BseDI CCNNGG 2 cut(s) 78, 309
BseGI GGATG 3 cut(s) 189, 205, 305
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 4 cut(s) 31, 104, 105, 288
BsgI GTGCAG 2 cut(s) 58, 108
BshFI GGCC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 60, 138
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 276
BsrI ACTGG 4 cut(s) 31, 104, 105, 288
BssECI CCNNGG 2 cut(s) 78, 309
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 80, 269
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 265
BstF5I GGATG 3 cut(s) 189, 205, 305
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 80, 269
BstSCI CCNGG 4 cut(s) 59, 78, 137, 267
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 3 cut(s) 189, 205, 305
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 112, 176, 321
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 4 cut(s) 227, 263, 267, 275
CviKI_1 RGCY 4 cut(s) 227, 263, 267, 275
CviQI GTAC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 78, 267
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 309
FaiI YATR 3 cut(s) 47, 66, 122
FokI GGATG 3 cut(s) 192, 196, 292
FspBI CTAG 1 cut(s) 343
HaeIII GGCC 1 cut(s) 267
HapII CCGG 2 cut(s) 60, 138
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 2 cut(s) 134, 257
HpaII CCGG 2 cut(s) 60, 138
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 24, 256
Hpy8I GTNNAC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 11, 75, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 280
LweI GCATC 1 cut(s) 314
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 4 cut(s) 37, 118, 240, 243
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 244
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 2 cut(s) 219, 323
Mph1103I ATGCAT 1 cut(s) 13
MspI CCGG 2 cut(s) 60, 138
MspR9I CCNGG 4 cut(s) 61, 80, 139, 269
MvaI CCWGG 2 cut(s) 80, 269
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 2 cut(s) 61, 139
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 13
PfeI GAWTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 137
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 78, 267
PspGI CCWGG 2 cut(s) 78, 267
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 4 cut(s) 61, 80, 139, 269
SduI GDGCHC 1 cut(s) 201
SetI ASST 3 cut(s) 20, 229, 334
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 1 cut(s) 102
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 4 cut(s) 59, 78, 137, 267
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 167
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 3 cut(s) 112, 176, 321
TspDTI ATGAA 3 cut(s) 109, 142, 200
TspRI CASTG 3 cut(s) 112, 176, 321
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.