Rh2BG366100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014769
Physical Location & Seq
Forward (+)
50921807 .. 50922106
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG366100.1

Sequence Viewer

Length: 300 bp
ATGGTCAACCAATCTGGGTATGACAACTGCACCCTGGATAGTGCAGTAGGGAACTGGAGCAGTGGCAAGGACTTCATACTCTTCAATAAATCCGGGAGATACTACTTCATTTGTGGAAATGGCCAGTGCTTCAATGGGATGAAAGTCACTGTTCTCGTCCATCCTCTGCCCACGCCAACAGCTTCTCCATCTCCCAAGAATTCTACATCAGACTCTGCTGGCCCAGTGGCTCCACGACTGGGATTTCGTGTTTTGGTGACGTCCTTGGCAGTGATGTGGTTTGGAGGTGGGTGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

99

Amino Acids

10.58

Weight (kDa)

8.96

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 2 - 47 2.4e-07 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 85, 133
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 121, 220
ApoI RAATTY 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 268
BalI TGGCCA 1 cut(s) 123
BccI CCATC 2 cut(s) 168, 196
BciT130I CCWGG 1 cut(s) 35
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 35, 94
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 35, 94
BmrI ACTGGG 2 cut(s) 218, 248
BmuI ACTGGG 2 cut(s) 218, 248
BpmI CTGGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 33, 264
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 4 cut(s) 59, 124, 224, 243
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 33, 264
BseGI GGATG 2 cut(s) 144, 160
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 4 cut(s) 59, 124, 224, 243
BsgI GTGCAG 2 cut(s) 13, 63
BshFI GGCC 2 cut(s) 123, 222
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 2 cut(s) 123, 222
BspANI GGCC 2 cut(s) 123, 222
BspLI GGNNCC 1 cut(s) 231
BsrI ACTGG 4 cut(s) 59, 124, 224, 243
BssECI CCNNGG 2 cut(s) 33, 264
BssNI GRCGYC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 220
BstF5I GGATG 2 cut(s) 144, 160
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 33, 92
BsuRI GGCC 2 cut(s) 123, 222
BtsCI GGATG 2 cut(s) 144, 160
BtsI GCAGTG 2 cut(s) 67, 276
BtsIMutI CAGTG 5 cut(s) 67, 131, 147, 231, 276
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 221
CviJI RGCY 4 cut(s) 123, 182, 222, 230
CviKI_1 RGCY 4 cut(s) 123, 182, 222, 230
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaiI YATR 2 cut(s) 21, 77
FokI GGATG 2 cut(s) 147, 151
FspBI CTAG 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 123, 222
HapII CCGG 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 30, 44
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 57, 235
LpnPI CCDG 8 cut(s) 20, 40, 47, 106, 137, 204, 224, 237
MaeI CTAG 1 cut(s) 298
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 2 cut(s) 145, 256
MboII GAAGA 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 174, 278
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 35, 94
MvaI CCWGG 1 cut(s) 35
NciI CCSGG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 145, 256
PfoI TCCNGGA 1 cut(s) 92
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 35, 94
SetI ASST 3 cut(s) 184, 263, 289
Sse9I AATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 298
StyD4I CCNGG 2 cut(s) 33, 92
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 263
TasI AATT 1 cut(s) 199
TscAI CASTG 5 cut(s) 67, 131, 154, 231, 276
TseFI GTSAC 2 cut(s) 145, 256
Tsp45I GTSAC 2 cut(s) 145, 256
TspDTI ATGAA 3 cut(s) 64, 97, 155
TspRI CASTG 5 cut(s) 67, 131, 154, 231, 276
XapI RAATTY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 1 cut(s) 298
ZraI GACGTC 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.