Rw2G029280

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014769
Physical Location & Seq
Forward (+)
47339922 .. 47341660
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029280.1

Sequence Viewer

Length: 522 bp
ATGTCGACTTCCATGTCCAACAACTCAACCCACCTCCTCCTCCTCCTCCTTTTCGTCTCCGGCGTTGCCGTCATCACTCCCATCCTCGCCACCGACCACATTGTGGGTGCTAATCGTGGCTGGAACCCAGGGATCAACTACACCCTCTGGGCCAACAACCACACTTTCTATGTTGGGGACTTCATTTCATTCAGGTACCAAAAGAACCAGTACAATGTGTTTATGGTCAACCAATCTGGGTATGACAACTGCACCCTGGATAGTGCAGTAGGGAACTGGAGCAGTGGCAAGGACTTCATACTCTTCAATAAATCCGGGAGATACTACTTCATTTGTGGAAATGGCCAGTGCTTCAATGGGATGAAAGTCACTGTTCTCGTCCATCCTCTGCCCACGCCAACAGCTTCTCCATCTCCCAAGAATTCTACATCAGACTCTGCTGGCCCAGTGGCTCCACGACTGGGATTTCGTGTTTTGGTGACGTCCTTGGCAGTGATGTGGTTTGGAGGTGGGTGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

173

Amino Acids

18.93

Weight (kDa)

9.1

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 121 3.7e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AatII GACGTC 1 cut(s) 485
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 103
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 482
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 2 cut(s) 197, 212
AfiI CCNNNNNNNGG 2 cut(s) 103, 461
AgsI TTSAA 2 cut(s) 307, 355
AjnI CCWGG 2 cut(s) 127, 255
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 3 cut(s) 150, 343, 442
ApoI RAATTY 1 cut(s) 421
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
Asp718I GGTACC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 150, 443
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 490
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 1 cut(s) 195
BccI CCATC 3 cut(s) 89, 390, 418
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 129, 257
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 520
Bme1390I CCNGG 3 cut(s) 129, 257, 316
BmgT120I GGNCC 2 cut(s) 150, 443
BmiI GGNNCC 3 cut(s) 125, 197, 453
BmrFI CCNGG 3 cut(s) 129, 257, 316
BmrI ACTGGG 2 cut(s) 440, 470
BmuI ACTGGG 2 cut(s) 440, 470
BpmI CTGGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 127, 128, 255, 486
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 461
Bse1I ACTGG 5 cut(s) 208, 281, 346, 446, 465
BseBI CCWGG 2 cut(s) 129, 257
BseDI CCNNGG 4 cut(s) 127, 128, 255, 486
BseGI GGATG 3 cut(s) 81, 366, 382
BseLI CCNNNNNNNGG 2 cut(s) 103, 461
BseNI ACTGG 5 cut(s) 208, 281, 346, 446, 465
BseRI GAGGAG 4 cut(s) 26, 29, 32, 35
BsgI GTGCAG 2 cut(s) 235, 285
BshFI GGCC 3 cut(s) 152, 345, 444
BshNI GGYRCC 1 cut(s) 195
BsiSI CCGG 2 cut(s) 60, 315
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 103, 461
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 3 cut(s) 152, 345, 444
Bsp143I GATC 1 cut(s) 132
BspANI GGCC 3 cut(s) 152, 345, 444
BspLI GGNNCC 3 cut(s) 125, 197, 453
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 195
BsrI ACTGG 5 cut(s) 208, 281, 346, 446, 465
BssECI CCNNGG 4 cut(s) 127, 128, 255, 486
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 129, 257
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 442
BstF5I GGATG 3 cut(s) 81, 366, 382
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 129, 257
BstSCI CCNGG 3 cut(s) 127, 255, 314
BsuRI GGCC 3 cut(s) 152, 345, 444
BtsCI GGATG 3 cut(s) 81, 366, 382
BtsI GCAGTG 2 cut(s) 289, 498
BtsIMutI CAGTG 5 cut(s) 289, 353, 369, 453, 498
Cac8I GCNNGC 1 cut(s) 442
CaiI CAGNNNCTG 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 150, 443
Csp6I GTAC 2 cut(s) 196, 211
CviAII CATG 1 cut(s) 13
CviJI RGCY 6 cut(s) 120, 152, 345, 404, 444, 452
CviKI_1 RGCY 6 cut(s) 120, 152, 345, 404, 444, 452
CviQI GTAC 2 cut(s) 196, 211
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 127, 255
EcoT14I CCWWGG 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 1 cut(s) 16
FaiI YATR 5 cut(s) 14, 171, 224, 243, 299
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 5
FokI GGATG 3 cut(s) 68, 369, 373
FspBI CTAG 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 3 cut(s) 152, 345, 444
HapII CCGG 2 cut(s) 60, 315
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 2 cut(s) 6, 229
HindII GTYRAC 2 cut(s) 6, 229
HinfI GANTC 1 cut(s) 434
HpaII CCGG 2 cut(s) 60, 315
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 2 cut(s) 6, 229
Hpy188I TCNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 6, 229
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 2 cut(s) 252, 266
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 1 cut(s) 16
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 279, 457
MaeI CTAG 1 cut(s) 520
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 367, 478
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 1 cut(s) 421
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 9 cut(s) 44, 47, 50, 53, 56, 95, 155, 396, 500
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 2 cut(s) 60, 315
MspR9I CCNGG 3 cut(s) 129, 257, 316
MvaI CCWGG 2 cut(s) 129, 257
NciI CCSGG 1 cut(s) 316
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 3 cut(s) 125, 197, 453
NmuCI GTSAC 2 cut(s) 367, 478
PasI CCCWGGG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 314
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 127, 255
PspGI CCWGG 2 cut(s) 127, 255
PspN4I GGNNCC 3 cut(s) 125, 197, 453
PspPI GGNCC 2 cut(s) 150, 443
PstNI CAGNNNCTG 1 cut(s) 437
RsaI GTAC 2 cut(s) 197, 212
RsaNI GTAC 2 cut(s) 196, 211
SalI GTCGAC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 150, 443
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 129, 257, 316
SetI ASST 5 cut(s) 36, 197, 406, 485, 511
Sse9I AATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 520
StyD4I CCNGG 3 cut(s) 127, 255, 314
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 485
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 421
TatI WGTACW 1 cut(s) 210
TscAI CASTG 5 cut(s) 289, 353, 376, 453, 498
TseFI GTSAC 2 cut(s) 367, 478
Tsp45I GTSAC 2 cut(s) 367, 478
TspDTI ATGAA 5 cut(s) 172, 177, 286, 319, 377
TspRI CASTG 5 cut(s) 289, 353, 376, 453, 498
Van91I CCANNNNNTGG 1 cut(s) 103
XapI RAATTY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 520
ZraI GACGTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.