Rorug02G0307800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014769
Physical Location & Seq
Forward (+)
34944326 .. 34946454
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0307800.1

Sequence Viewer

Length: 1149 bp
ATGCTCCTATCACAATCTGCTGGAACCAAATGCAGGGAATTTAAGAGCAGACTCACCACCACCTATGTGTTGCCATATGTGGATGATCCGGAGATGTTACAGTTTCCACCAGATGACTATAGGTTTATTACTGTTGATGAGAGGACTGCTTTTGTAAAGGAAAGAACAAGCCCTAAGTTTTTGGAATTGCATGAGGCTCAAAAGGCAAGGCGTCTTAAGAATCAATATAATCACCATATGTCTCGTAAGGGATACACAGGACTGAGAAAAGAGTTGTCTCAAACCATGCCGGAAGAGGAGATTGACAGAGCAATGCTTTGGATCAAAGGACGCCAAACTAAACAAGAGACATTTAAACATGATGCGATCAAGGACACAGCTGATAAAATCGAAACACTGAAGCAAAAGGAACTCAGTGGAGAACTGACGATTTCTGGAAGTGATGATCTGCTGACATTAGCTTTGGGGACTCCGGAGCACCCTGGAAGAGTTAGAGGTGTGGGGGGTTATAAACAGAAGCTGGAAGAAGAGTTAAATGAGAAGATATTGGCTGAAGAGAGAGAAAAGATAGTGGCAGCTGAAAGGGCATATTGGTGTTCTAGGATTGAACAATTGGAAGCAAAAATTAATGGAACCTTGCATGAGGTGGGAGTTCCTCATGTTGGAGAAGGCAAAGTTGAAGAAAATGAGCACACATCCGGGCAAGCAAGTTGTTCTAAGACCAACCGTAAGGCTGCTACCAATCTCAACAACCATATGGAAGGAGCAGTAGTCACAAAATGCTTGGATATGATGGAGAGAAATATGATGCAAAAACATAAGAAAAAGACAACTAAGGTAACTCCCACTGAGAAGGAATGCAAGTTGGCATTAGGTGATATTGGCCATGTTGTTGCTATTGCAACGGTGATGACAGGCGATGATCCATCCGCAACGTGTCATGGGACTCCATTGGGAGATGAAAATTTGCGTGTTTCTATTTATGCTGCTATTGAGGAGCAGGCTATGATTCCATTTCCAATAAAGGATGAGATTATGACAGTGAAGCAAGCTATGGGGAGCTGGGTCATGTGGCCAAAAAACTTGATCATATATAATGAAAAGAAAAAGGTGAGTGGTAAAGCAAATAGGAAGCAAAAAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

382

Amino Acids

43.35

Weight (kDa)

8.77

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 52 - 172 4.4e-09 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 284 - 364 8.8e-12 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
AccIII TCCGGA 2 cut(s) 88, 472
AciI CCGC 1 cut(s) 930
AclWI GGATC 3 cut(s) 80, 329, 917
AcoI YGGCCR 2 cut(s) 883, 1073
AcsI RAATTY 2 cut(s) 38, 964
AcuI CTGAAG 2 cut(s) 419, 573
AcyI GRCGYC 2 cut(s) 211, 331
AfiI CCNNNNNNNGG 2 cut(s) 33, 662
AflII CTTAAG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 2 cut(s) 608, 680
AjnI CCWGG 1 cut(s) 481
AleI CACNNNNGTG 1 cut(s) 65
AluBI AGCT 6 cut(s) 380, 461, 520, 578, 1052, 1062
AluI AGCT 6 cut(s) 380, 461, 520, 578, 1052, 1062
Alw21I GWGCWC 2 cut(s) 480, 693
Alw26I GTCTC 3 cut(s) 246, 282, 341
AlwI GGATC 3 cut(s) 80, 329, 917
AlwNI CAGNNNCTG 1 cut(s) 520
Aor13HI TCCGGA 2 cut(s) 88, 472
AoxI GGCC 2 cut(s) 883, 1073
ApeKI GCWGC 3 cut(s) 575, 734, 986
ApoI RAATTY 2 cut(s) 38, 964
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
AseI ATTAAT 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 5 cut(s) 46, 224, 887, 919, 1123
BalI TGGCCA 2 cut(s) 885, 1075
Bbv12I GWGCWC 2 cut(s) 480, 693
BbvI GCAGC 3 cut(s) 587, 721, 973
BccI CCATC 2 cut(s) 787, 934
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 245
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 246, 282, 341
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 215
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 3 cut(s) 576, 735, 987
BlsI GCNGC 3 cut(s) 577, 736, 988
Bme1390I CCNGG 2 cut(s) 483, 700
BmiI GGNNCC 2 cut(s) 25, 634
BmrFI CCNGG 2 cut(s) 483, 700
BmsI GCATC 2 cut(s) 352, 798
BpuMI CCSGG 1 cut(s) 700
BsaHI GRCGYC 2 cut(s) 211, 331
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 2 cut(s) 88, 472
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 662
Bse3DI GCAATG 1 cut(s) 318
BseAI TCCGGA 2 cut(s) 88, 472
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 4 cut(s) 88, 695, 926, 1033
BseLI CCNNNNNNNGG 2 cut(s) 33, 662
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 254, 427, 840
BseRI GAGGAG 2 cut(s) 311, 1010
BseXI GCAGC 3 cut(s) 587, 721, 973
BseYI CCCAGC 1 cut(s) 1062
BshFI GGCC 2 cut(s) 885, 1075
BsiHKAI GWGCWC 2 cut(s) 480, 693
BsiSI CCGG 4 cut(s) 89, 290, 473, 699
BslFI GGGAC 2 cut(s) 481, 958
BslI CCNNNNNNNGG 2 cut(s) 33, 662
BsmAI GTCTC 3 cut(s) 246, 282, 341
BsmFI GGGAC 2 cut(s) 481, 958
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 2 cut(s) 885, 1075
Bsp1286I GDGCHC 2 cut(s) 480, 693
Bsp13I TCCGGA 2 cut(s) 88, 472
Bsp143I GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
BspACI CCGC 1 cut(s) 930
BspANI GGCC 2 cut(s) 885, 1075
BspCNI CTCAG 3 cut(s) 255, 426, 841
BspEI TCCGGA 2 cut(s) 88, 472
BspLI GGNNCC 2 cut(s) 25, 634
BspPI GGATC 3 cut(s) 80, 329, 917
BspTI CTTAAG 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
BssNI GRCGYC 2 cut(s) 211, 331
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 102, 133, 728, 907, 1042
Bst6I CTCTTC 4 cut(s) 288, 481, 522, 549
BstACI GRCGYC 2 cut(s) 211, 331
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 3 cut(s) 705, 1002, 1050
BstDEI CTNAG 6 cut(s) 174, 263, 413, 717, 834, 849
BstF5I GGATG 4 cut(s) 88, 695, 926, 1033
BstKTI GATC 6 cut(s) 88, 324, 369, 448, 925, 1089
BstMAI GTCTC 3 cut(s) 246, 282, 341
BstMBI GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
BstMWI GCNNNNNNNGC 2 cut(s) 203, 584
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 481, 698
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 587, 721, 973
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 885, 1075
BtgZI GCGATG 1 cut(s) 933
BtsCI GGATG 4 cut(s) 88, 695, 926, 1033
BtsIMutI CAGTG 4 cut(s) 395, 421, 846, 1047
Cac8I GCNNGC 3 cut(s) 705, 1002, 1050
CaiI CAGNNNCTG 1 cut(s) 520
CseI GACGC 2 cut(s) 200, 339
CviAII CATG 8 cut(s) 191, 286, 359, 641, 659, 887, 941, 1069
DdeI CTNAG 6 cut(s) 174, 263, 413, 717, 834, 849
DpnI GATC 6 cut(s) 87, 323, 368, 447, 924, 1088
DpnII GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
DraI TTTAAA 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 883, 1073
Eam1104I CTCTTC 4 cut(s) 288, 481, 522, 549
EarI CTCTTC 4 cut(s) 288, 481, 522, 549
Eco57I CTGAAG 2 cut(s) 419, 573
EcoRII CCWGG 1 cut(s) 481
FaeI CATG 8 cut(s) 194, 289, 362, 644, 662, 890, 944, 1072
FaqI GGGAC 2 cut(s) 481, 958
FatI CATG 8 cut(s) 190, 285, 358, 640, 658, 886, 940, 1068
FauNDI CATATG 3 cut(s) 76, 237, 756
FbaI TGATCA 1 cut(s) 1086
Fnu4HI GCNGC 3 cut(s) 576, 735, 987
FokI GGATG 4 cut(s) 95, 682, 913, 1040
Fsp4HI GCNGC 3 cut(s) 576, 735, 987
FspBI CTAG 1 cut(s) 600
GluI GCNGC 3 cut(s) 576, 735, 987
GsaI CCCAGC 1 cut(s) 1066
HaeIII GGCC 2 cut(s) 885, 1075
HapII CCGG 4 cut(s) 89, 290, 473, 699
HgaI GACGC 2 cut(s) 200, 339
Hin1I GRCGYC 2 cut(s) 211, 331
Hin1II CATG 8 cut(s) 194, 289, 362, 644, 662, 890, 944, 1072
HinfI GANTC 5 cut(s) 51, 220, 469, 946, 1009
HpaII CCGG 4 cut(s) 89, 290, 473, 699
HphI GGTGA 5 cut(s) 46, 224, 887, 919, 1123
Hpy188III TCNNGA 3 cut(s) 89, 435, 473
HpyAV CCTTC 3 cut(s) 662, 755, 847
HpyCH4III ACNGT 5 cut(s) 102, 133, 728, 907, 1042
HpyCH4IV ACGT 1 cut(s) 935
HpyCH4V TGCA 6 cut(s) 33, 190, 640, 811, 861, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 584
HpyF3I CTNAG 6 cut(s) 174, 263, 413, 717, 834, 849
HpySE526I ACGT 1 cut(s) 935
Hsp92I GRCGYC 2 cut(s) 211, 331
Hsp92II CATG 8 cut(s) 194, 289, 362, 644, 662, 890, 944, 1072
Kpn2I TCCGGA 2 cut(s) 88, 472
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
LmnI GCTCC 5 cut(s) 9, 475, 764, 997, 1059
Lsp1109I GCAGC 3 cut(s) 587, 721, 973
LweI GCATC 2 cut(s) 352, 798
MaeI CTAG 1 cut(s) 600
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 3 cut(s) 96, 772, 838
MalI GATC 6 cut(s) 87, 323, 368, 447, 924, 1088
MboI GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
MboII GAAGA 7 cut(s) 305, 498, 536, 539, 553, 566, 692
MfeI CAATTG 1 cut(s) 611
MhlI GDGCHC 2 cut(s) 480, 693
MlsI TGGCCA 2 cut(s) 885, 1075
MluCI AATT 5 cut(s) 38, 185, 611, 624, 964
MluNI TGGCCA 2 cut(s) 885, 1075
MlyI GAGTC 3 cut(s) 45, 463, 940
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 7 cut(s) 135, 187, 289, 488, 637, 666, 988
Mox20I TGGCCA 2 cut(s) 885, 1075
MroI TCCGGA 2 cut(s) 88, 472
MscI TGGCCA 2 cut(s) 885, 1075
MseI TTAA 5 cut(s) 42, 216, 354, 533, 627
MslI CAYNNNNRTG 2 cut(s) 65, 592
Msp20I TGGCCA 2 cut(s) 885, 1075
MspA1I CMGCKG 2 cut(s) 380, 578
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 4 cut(s) 89, 290, 473, 699
MspR9I CCNGG 2 cut(s) 483, 700
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 203, 584
NciI CCSGG 1 cut(s) 700
NdeI CATATG 3 cut(s) 76, 237, 756
NdeII GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
NlaIII CATG 8 cut(s) 194, 289, 362, 644, 662, 890, 944, 1072
NlaIV GGNNCC 2 cut(s) 25, 634
NmuCI GTSAC 1 cut(s) 772
OliI CACNNNNGTG 1 cut(s) 65
PctI GAATGC 1 cut(s) 863
PfeI GAWTC 2 cut(s) 220, 1009
PkrI GCNGC 3 cut(s) 577, 736, 988
PleI GAGTC 3 cut(s) 45, 463, 940
PpsI GAGTC 3 cut(s) 45, 463, 940
PshBI ATTAAT 1 cut(s) 627
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 1062
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 25, 634
PstNI CAGNNNCTG 1 cut(s) 520
PvuII CAGCTG 2 cut(s) 380, 578
RseI CAYNNNNRTG 2 cut(s) 65, 592
SaqAI TTAA 5 cut(s) 42, 216, 354, 533, 627
SatI GCNGC 3 cut(s) 576, 735, 987
Sau3AI GATC 6 cut(s) 85, 321, 366, 445, 922, 1086
SchI GAGTC 3 cut(s) 45, 463, 940
ScrFI CCNGG 2 cut(s) 483, 700
SduI GDGCHC 2 cut(s) 480, 693
SfaNI GCATC 2 cut(s) 352, 798
SfcI CTRYAG 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 65, 592
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 5 cut(s) 38, 185, 611, 624, 964
SsiI CCGC 1 cut(s) 930
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 481, 698
TaaI ACNGT 5 cut(s) 102, 133, 728, 907, 1042
TaiI ACGT 1 cut(s) 938
TaqI TCGA 1 cut(s) 390
TasI AATT 5 cut(s) 38, 185, 611, 624, 964
TfiI GAWTC 2 cut(s) 220, 1009
Tru1I TTAA 5 cut(s) 42, 216, 354, 533, 627
Tru9I TTAA 5 cut(s) 42, 216, 354, 533, 627
TscAI CASTG 4 cut(s) 402, 421, 853, 1047
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 3 cut(s) 575, 734, 986
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 2 cut(s) 975, 1113
TspRI CASTG 4 cut(s) 402, 421, 853, 1047
Vha464I CTTAAG 1 cut(s) 215
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 2 cut(s) 38, 964
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.