Rmu_sc0007091.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007091.1
OG0014769
Physical Location & Seq
Forward (+)
1 .. 836
836 bp
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UTR
Exon/CDS
Intron
Rmu_sc0007091.1_g000001.1.cds

Sequence Viewer

Length: 335 bp
cattcaggtaccaaaagaaccagtacaatgtgtttatggtcaaccaatctgggtatgacaactgcacactggatagtgcaatggggaactggagcagtggcaaggacttcatactcttcaataaatccgggagatactacttcatttgtggaaatggccagtgcttcaatgggatgaaagtcactgttctcgtccatcctctgcccacgccaacggcttctccatctcccaagaattctacatcagactctgctggcccggtggctccacgactgggatttcgtgttttggtgacgtccttggcagtgatgtggtttggaggtgggtgggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

110

Amino Acids

12.1

Weight (kDa)

9.37

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 298
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 2 cut(s) 10, 25
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 120, 168
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 156, 255
ApoI RAATTY 1 cut(s) 234
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp718I GGTACC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 2 cut(s) 129, 259
AsuHPI GGTGA 1 cut(s) 303
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 8
BccI CCATC 2 cut(s) 203, 231
BceAI ACGGC 1 cut(s) 230
BcnI CCSGG 2 cut(s) 129, 259
BfaI CTAG 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 129, 259
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 10, 266
BmrFI CCNGG 2 cut(s) 129, 259
BmrI ACTGGG 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 111
BpuMI CCSGG 2 cut(s) 129, 259
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 5 cut(s) 21, 74, 94, 159, 278
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 2 cut(s) 179, 195
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 86
BseNI ACTGG 5 cut(s) 21, 74, 94, 159, 278
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 158, 257
BshNI GGYRCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 128, 259
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 2 cut(s) 158, 257
BspANI GGCC 2 cut(s) 158, 257
BspLI GGNNCC 2 cut(s) 10, 266
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 5 cut(s) 21, 74, 94, 159, 278
BssECI CCNNGG 1 cut(s) 299
BssNI GRCGYC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 255
BstF5I GGATG 2 cut(s) 179, 195
BstSCI CCNGG 2 cut(s) 127, 257
BsuRI GGCC 2 cut(s) 158, 257
BtsCI GGATG 2 cut(s) 179, 195
BtsI GCAGTG 2 cut(s) 102, 311
BtsIMutI CAGTG 5 cut(s) 67, 102, 166, 182, 311
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 9, 24
CviJI RGCY 4 cut(s) 158, 217, 257, 265
CviKI_1 RGCY 4 cut(s) 158, 217, 257, 265
CviQI GTAC 2 cut(s) 9, 24
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaiI YATR 3 cut(s) 37, 56, 112
FokI GGATG 2 cut(s) 182, 186
FspBI CTAG 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 158, 257
HapII CCGG 2 cut(s) 128, 259
Hin1I GRCGYC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 128, 259
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 65, 79
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 295
KpnI GGTACC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 92, 270
LpnPI CCDG 9 cut(s) 34, 35, 55, 75, 141, 172, 239, 259, 272
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 180, 291
MboII GAAGA 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 2 cut(s) 209, 313
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 2 cut(s) 128, 259
MspR9I CCNGG 2 cut(s) 129, 259
NciI CCSGG 2 cut(s) 129, 259
NlaIV GGNNCC 2 cut(s) 10, 266
NmuCI GTSAC 2 cut(s) 180, 291
PfoI TCCNGGA 1 cut(s) 127
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 10, 266
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 250
RsaI GTAC 2 cut(s) 10, 25
RsaNI GTAC 2 cut(s) 9, 24
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 129, 259
SetI ASST 3 cut(s) 10, 298, 324
Sse9I AATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 127, 257
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 298
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 23
TscAI CASTG 5 cut(s) 74, 102, 166, 189, 311
TseFI GTSAC 2 cut(s) 180, 291
Tsp45I GTSAC 2 cut(s) 180, 291
TspDTI ATGAA 3 cut(s) 99, 132, 190
TspRI CASTG 5 cut(s) 74, 102, 166, 189, 311
XapI RAATTY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 333
ZraI GACGTC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.