Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014769

Physical Location & Seq

Genomic Coordinates Reverse (-)

7643840 .. 7645307

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTGGAAGTCTTGTAACACAACCCACCTCATCTTGTTTCTCCTTTTCATATCCGGCCTTGCAGTCCTCACTCCAATCCTTGCCACTGACCACATTGTTGGTGCCAACCGTGGCTGGAACGCTGGCATCAACTACACCCTCTGGGCCAACAACCAAACTTTCTATGTTGGGGACCTCATCTCATTTAGGTACCCAAAGAACCAGTACAATGTGTTTGAGGTAAACCAGACTGGGTATGACAACTGCACCTTGGACAGTGCTGTAGGGAACTGGAGCAGTGGCAAAGACTTCATACCCCTCAATCAGGCCAAGAGGTATTACTTCATTTGTGGCAATGGTCAATGCTACAATGGCATGAAGGTCTCTGTTGTTGTCCATCCTCTGCCTTCACCCCCCAAGGCCGCCCCAGGTGCCCATAATTCTTCATCAGATTCTGCTGTCCTGGTTGTTCCTCGACAGGGATTTCGGGCCTTAGCGGTCTCTTTGGCAATGCTGTGCTTTGGATTCGGATGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

8.85

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g28520 FvH4_6g28520
malus_domestica	MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica	Prupe.3G099600_v2.0.a1
pyrus_communis	pycom17g22780
rosa_chinensis	RchiOBHm_Chr2g0132811
rosa_laevigata	RLG00000019284
rosa_multiflora	Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa	Rorug02G0307800
rosa_samantha	Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana	Rw2G029280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	3 cut(s)	101, 189, 410
AciI	CCGC	2 cut(s)	402, 476
AfaI	GTAC	2 cut(s)	191, 206
AfiI	CCNNNNNNNGG	2 cut(s)	304, 458
AjnI	CCWGG	2 cut(s)	406, 441
Alw26I	GTCTC	2 cut(s)	367, 484
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	5 cut(s)	55, 144, 306, 399, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
Asp718I	GGTACC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	144, 172, 468
AsuHPI	GGTGA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	3 cut(s)	101, 189, 410
BccI	CCATC	2 cut(s)	384, 504
BciT130I	CCWGG	2 cut(s)	408, 443
BcoDI	GTCTC	2 cut(s)	367, 484
BfaI	CTAG	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	408, 443
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	144, 172, 468
BmiI	GGNNCC	4 cut(s)	103, 173, 191, 412
BmrFI	CCNGG	2 cut(s)	408, 443
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	472
BsaI	GGTCTC	2 cut(s)	367, 484
BsaJI	CCNNGG	4 cut(s)	109, 249, 396, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 458
Bse1I	ACTGG	3 cut(s)	202, 235, 275
Bse3DI	GCAATG	2 cut(s)	340, 495
BseBI	CCWGG	2 cut(s)	408, 443
BseDI	CCNNGG	4 cut(s)	109, 249, 396, 406
BseGI	GGATG	2 cut(s)	376, 515
BseLI	CCNNNNNNNGG	2 cut(s)	304, 458
BseMI	GCAATG	2 cut(s)	340, 495
BseNI	ACTGG	3 cut(s)	202, 235, 275
BseSI	GKGCMC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	229
BshFI	GGCC	5 cut(s)	57, 146, 308, 401, 470
BshNI	GGYRCC	3 cut(s)	101, 189, 410
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	304, 458
BsmAI	GTCTC	2 cut(s)	367, 484
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	57, 146, 308, 401, 470
Bso31I	GGTCTC	2 cut(s)	367, 484
Bsp1286I	GDGCHC	1 cut(s)	415
BspACI	CCGC	2 cut(s)	402, 476
BspANI	GGCC	5 cut(s)	57, 146, 308, 401, 470
BspLI	GGNNCC	4 cut(s)	103, 173, 191, 412
BspT107I	GGYRCC	3 cut(s)	101, 189, 410
BspTNI	GGTCTC	2 cut(s)	367, 484
BsrDI	GCAATG	2 cut(s)	340, 495
BsrI	ACTGG	3 cut(s)	202, 235, 275
BssECI	CCNNGG	4 cut(s)	109, 249, 396, 406
BssT1I	CCWWGG	2 cut(s)	249, 396
Bst2UI	CCWGG	2 cut(s)	408, 443
Bst4CI	ACNGT	2 cut(s)	110, 257
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	472
BstDSI	CCRYGG	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	376, 515
BstMAI	GTCTC	2 cut(s)	367, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 410
BstNI	CCWGG	2 cut(s)	408, 443
BstSCI	CCNGG	2 cut(s)	406, 441
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	57, 146, 308, 401, 470
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	376, 515
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	84, 262, 283
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	3 cut(s)	144, 172, 468
Csp6I	GTAC	2 cut(s)	190, 205
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	6 cut(s)	57, 114, 146, 308, 401, 470
CviKI_1	RGCY	6 cut(s)	57, 114, 146, 308, 401, 470
CviQI	GTAC	2 cut(s)	190, 205
DdeI	CTNAG	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	249, 396
Eco31I	GGTCTC	2 cut(s)	367, 484
Eco47I	GGWCC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	406, 441
EcoT14I	CCWWGG	2 cut(s)	249, 396
ErhI	CCWWGG	2 cut(s)	249, 396
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	50, 165, 237, 293, 356, 417
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	517
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	292
HaeIII	GGCC	5 cut(s)	57, 146, 308, 401, 470
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	2 cut(s)	431, 504
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	430, 509
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	352, 396
HpyCH4III	ACNGT	2 cut(s)	110, 257
HpyCH4V	TGCA	2 cut(s)	62, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 410
HpyF3I	CTNAG	1 cut(s)	472
Hsp92II	CATG	1 cut(s)	358
KpnI	GGTACC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	273
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	1 cut(s)	418
MnlI	CCTC	9 cut(s)	38, 77, 149, 185, 211, 306, 308, 390, 462
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	408, 443
MvaI	CCWGG	2 cut(s)	408, 443
MwoI	GCNNNNNNNGC	2 cut(s)	351, 410
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	4 cut(s)	103, 173, 191, 412
PfeI	GAWTC	2 cut(s)	431, 504
PkrI	GCNGC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	406, 441
PspGI	CCWGG	2 cut(s)	406, 441
PspN4I	GGNNCC	4 cut(s)	103, 173, 191, 412
PspPI	GGNCC	3 cut(s)	144, 172, 468
PspPPI	RGGWCCY	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	191, 206
RsaNI	GTAC	2 cut(s)	190, 205
SatI	GCNGC	1 cut(s)	402
Sau96I	GGNCC	3 cut(s)	144, 172, 468
ScrFI	CCNGG	2 cut(s)	408, 443
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	8 cut(s)	30, 177, 191, 222, 251, 317, 363, 412
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	402, 476
SspMI	CTAG	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	406, 441
StyI	CCWWGG	2 cut(s)	249, 396
TaaI	ACNGT	2 cut(s)	110, 257
TaqI	TCGA	1 cut(s)	454
TasI	AATT	1 cut(s)	418
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	431, 504
TscAI	CASTG	3 cut(s)	91, 262, 283
TspDTI	ATGAA	5 cut(s)	37, 280, 313, 371, 414
TspRI	CASTG	3 cut(s)	91, 262, 283
VpaK11BI	GGWCC	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.