MD09G1225200.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014769
Physical Location & Seq
Reverse (-)
27757462 .. 27758469
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1225200.v1.1.491

Sequence Viewer

Length: 336 bp
ATGTCCACCAAGTCCTCGTCATCCAACTCAACCGACCTAATATTATTTCTGGTTTTCATCATCTCTGGGCTTGCAGTGCTCACTCCAATCGTGGCGACTGACCACATTGTTGGCGCCAAACATGGTTGGAATCCTGGCCAAAACTACACCCTCTGGGTCAACAACCACACATTCTATGTTGGGGACCTTATCTACACATTGTGGGCTATACAAGTTCACAATCTTTGGGATAAATGGTATAATTTAGGGATTTGGCTATTTAATACAATCACCAGTTCGACAGTCAGTCAAATGGTGACTATATTAAATACAGATGTTTATATAAATTATATCTGA

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

5.97

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 201
AhdI GACNNNNNGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 81
AoxI GGCC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 262, 307
AvaII GGWCC 1 cut(s) 184
BalI TGGCCA 1 cut(s) 138
BanI GGYRCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 115, 185
BmrFI CCNGG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 273
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 81
BspANI GGCC 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 115, 185
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 70, 138, 206, 256
CviKI_1 RGCY 4 cut(s) 70, 138, 206, 256
DinI GGCGCC 1 cut(s) 115
DraIII CACNNNGTG 1 cut(s) 201
DriI GACNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
FaeI CATG 1 cut(s) 125
FaiI YATR 8 cut(s) 123, 177, 209, 240, 302, 321, 323, 330
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 121
FokI GGATG 1 cut(s) 7
GlaI GCGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 130
HphI GGTGA 2 cut(s) 262, 307
Hpy166II GTNNAC 3 cut(s) 6, 160, 217
Hpy188I TCNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 6, 160, 217
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 35, 51, 120, 139, 147, 286
MaeIII GTNAC 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 2 cut(s) 241, 325
MluNI TGGCCA 1 cut(s) 138
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 48, 107
MnlI CCTC 2 cut(s) 25, 161
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 261, 305
Msp20I TGGCCA 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 114
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 115, 185
NmuCI GTSAC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 130
PluTI GGCGCC 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 115, 185
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
SaqAI TTAA 2 cut(s) 261, 305
Sau96I GGNCC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 81
SetI ASST 2 cut(s) 39, 189
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 1 cut(s) 184
Sse9I AATT 2 cut(s) 241, 325
SspDI GGCGCC 1 cut(s) 113
SspI AATATT 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 241, 325
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 261, 305
Tru9I TTAA 2 cut(s) 261, 305
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 46
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.