pycom17g22780

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014769
Physical Location & Seq
Reverse (-)
21165357 .. 21166705
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22780.1

Sequence Viewer

Length: 531 bp
ATGTCCAAGTCCTCCTCCAACTCCAACTCCAATGACCACATCTTGCTTCTCGTTTTCATCATCTCGGGGCTTGCAGTGCTCACTCCAGTCCTTGCCACTGACCACATTGTTGGAGCCAACCGTGGCTGGAATCCTAGCCAAAACTACACCCTCTGGGCCAACAACCAAACTTTCTATGTTGGGGACCTTATTTCGTTTAGGTACCAAAAGCACCAGTACAATGTGTTCGAAGTGAACCAAACAGGGTATGACAACTGCACCTTGGACGGTGCAGTTGGGAACTGGAGCAGTGGCAAAGACTTCATCCCCCTCAATCAGGCCAAGAGGTATTACTTCATTTGTGGCAATGGGCAGTGCTACAATGGCATGAAGGTCTCTGTCCTTGTCCATCCTCTGCCTTCCCCCCCAAAGGCCGCCGTCAGTGCTCATAACTCTTCATCAGATGCTGCTGTCCTGGTGGTTCCTCAACAGGGATTTCGGGCTTTGGCGGTTTCCTTGGCAATGCTGTGCTTTGGATTTGGATGGGTGTAG

Protein Analysis

177

Amino Acids

19.22

Weight (kDa)

8.36

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 123 2.6e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 2 cut(s) 414, 488
AfaI GTAC 2 cut(s) 203, 218
AfiI CCNNNNNNNGG 3 cut(s) 316, 409, 470
AjnI CCWGG 1 cut(s) 453
Alw21I GWGCWC 2 cut(s) 81, 427
Alw26I GTCTC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 3 cut(s) 156, 318, 411
ApeKI GCWGC 1 cut(s) 446
Asp718I GGTACC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 156, 184
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 81, 427
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 396, 516
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 414, 447
BlsI GCNGC 2 cut(s) 415, 448
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 156, 184
BmiI GGNNCC 4 cut(s) 115, 185, 203, 462
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 433
BpmI CTGGAG 2 cut(s) 69, 304
Bpu14I TTCGAA 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 121, 261, 495
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 409, 470
Bse1I ACTGG 3 cut(s) 86, 214, 287
Bse3DI GCAATG 2 cut(s) 352, 507
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 3 cut(s) 121, 261, 495
BseGI GGATG 3 cut(s) 303, 388, 527
BseLI CCNNNNNNNGG 3 cut(s) 316, 409, 470
BseMI GCAATG 2 cut(s) 352, 507
BseNI ACTGG 3 cut(s) 86, 214, 287
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 2 cut(s) 241, 291
BshFI GGCC 3 cut(s) 158, 320, 413
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 81, 427
BsiHKCI CYCGRG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 3 cut(s) 316, 409, 470
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 3 cut(s) 158, 320, 413
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 81, 427
BspACI CCGC 2 cut(s) 414, 488
BspANI GGCC 3 cut(s) 158, 320, 413
BspLI GGNNCC 4 cut(s) 115, 185, 203, 462
BspT104I TTCGAA 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 379
BsrDI GCAATG 2 cut(s) 352, 507
BsrI ACTGG 3 cut(s) 86, 214, 287
BssECI CCNNGG 3 cut(s) 121, 261, 495
BssT1I CCWWGG 2 cut(s) 261, 495
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 122, 269
Bst6I CTCTTC 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 121
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 303, 388, 527
BstMAI GTCTC 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 76, 363, 422
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 110
BsuRI GGCC 3 cut(s) 158, 320, 413
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 303, 388, 527
BtsI GCAGTG 3 cut(s) 81, 295, 359
BtsIMutI CAGTG 5 cut(s) 81, 96, 295, 359, 427
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 156, 184
Csp6I GTAC 2 cut(s) 202, 217
CviAII CATG 1 cut(s) 367
CviJI RGCY 8 cut(s) 70, 116, 126, 138, 158, 320, 413, 482
CviKI_1 RGCY 8 cut(s) 70, 116, 126, 138, 158, 320, 413, 482
CviQI GTAC 2 cut(s) 202, 217
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 261, 495
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 261, 495
ErhI CCWWGG 2 cut(s) 261, 495
FaeI CATG 1 cut(s) 370
FaiI YATR 4 cut(s) 177, 249, 368, 429
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 414, 447
FokI GGATG 2 cut(s) 290, 375
Fsp4HI GCNGC 2 cut(s) 414, 447
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 414, 447
GsuI CTGGAG 2 cut(s) 69, 304
HaeIII GGCC 3 cut(s) 158, 320, 413
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 442
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 364, 408
HpyCH4III ACNGT 2 cut(s) 122, 269
HpyCH4V TGCA 3 cut(s) 74, 258, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 363, 422
Hsp92II CATG 1 cut(s) 370
KpnI GGTACC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 113, 285
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 135
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 81, 427
MmeI TCCRAC 3 cut(s) 42, 48, 91
MnlI CCTC 7 cut(s) 22, 25, 161, 318, 320, 402, 474
MspR9I CCNGG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 76, 363, 422
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 4 cut(s) 115, 185, 203, 462
NspV TTCGAA 1 cut(s) 228
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 415, 448
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 4 cut(s) 115, 185, 203, 462
PspPI GGNCC 2 cut(s) 156, 184
PspPPI RGGWCCY 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstNI CAGNNNCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 203, 218
RsaNI GTAC 2 cut(s) 202, 217
SatI GCNGC 2 cut(s) 414, 447
Sau96I GGNCC 2 cut(s) 156, 184
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 81, 427
SetI ASST 5 cut(s) 189, 203, 263, 329, 375
SfaNI GCATC 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 228
SinI GGWCC 1 cut(s) 184
SsiI CCGC 2 cut(s) 414, 488
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 261, 495
TaaI ACNGT 2 cut(s) 122, 269
TaqI TCGA 1 cut(s) 228
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 5 cut(s) 81, 103, 295, 359, 427
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 5 cut(s) 46, 292, 325, 383, 426
TspRI CASTG 5 cut(s) 81, 103, 295, 359, 427
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 314
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.