Rmu_sc0004972.1_g000006

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004972.1
OG0014769
Physical Location & Seq
Forward (+)
17338 .. 18381
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004972.1_g000006.1.cds

Sequence Viewer

Length: 510 bp
atgtccaacaactcaacccacctcctcctcctcctccttttcgtctccggcgttgccgtcatcactcccatcctcgccaccgaccacattgtgggtgctaatcgtggctggaacccagggatcaactacaccctctgggccaacaaccacactttctatgttggggacttcatttcattcaggtaccaaaagaaccagtacaatgtgtttatggtcaaccaatctgggtatgacaactgcaccctggatagtgcagtagggaactggagcagtggcaaggacttcatactcttcaataaatccgggagatactacttcatttgtggaaatggccagtgcttcaatgggatgaaagtcactgttctcgtccatcctctgcccacgccaacagcttctccatctcccaagaattctacatcagactctgctggcccagtggctccacgactgggattttgtgttttggtgacgtccttggcagtgatgtggtttggaggtgggtgggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

169

Amino Acids

18.47

Weight (kDa)

8.73

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014769)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28520 FvH4_6g28520
malus_domestica MD09G1225200.v1.1 MD17G1223900.v1.1
prunus_persica Prupe.3G099600_v2.0.a1
pyrus_communis pycom17g22780
rosa_chinensis RchiOBHm_Chr2g0132811
rosa_laevigata RLG00000019284
rosa_multiflora Rmu_co8274343.1_g000001 Rmu_sc0004972.1_g000006 Rmu_sc0007091.1_g000001
rosa_rugosa Rorug02G0307800
rosa_samantha Rh2AG360200 Rh2BG366100 Rh2CG343500 Rh2DG383100
rosa_wichuraiana Rw2G029280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 473
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 91
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 409
AcyI GRCGYC 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 2 cut(s) 185, 200
AfiI CCNNNNNNNGG 2 cut(s) 91, 449
AgsI TTSAA 2 cut(s) 295, 343
AjnI CCWGG 2 cut(s) 115, 243
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 3 cut(s) 138, 331, 430
ApoI RAATTY 1 cut(s) 409
ArsI GACNNNNNNTTYG 2 cut(s) 438, 470
Asp718I GGTACC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 138, 431
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 478
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 183
BccI CCATC 3 cut(s) 77, 378, 406
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 2 cut(s) 117, 245
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 117, 245, 304
BmgT120I GGNCC 2 cut(s) 138, 431
BmiI GGNNCC 3 cut(s) 113, 185, 441
BmrFI CCNGG 3 cut(s) 117, 245, 304
BmrI ACTGGG 2 cut(s) 428, 458
BmuI ACTGGG 2 cut(s) 428, 458
BpmI CTGGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 115, 116, 243, 474
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 449
Bse1I ACTGG 5 cut(s) 196, 269, 334, 434, 453
BseBI CCWGG 2 cut(s) 117, 245
BseDI CCNNGG 4 cut(s) 115, 116, 243, 474
BseGI GGATG 3 cut(s) 69, 354, 370
BseLI CCNNNNNNNGG 2 cut(s) 91, 449
BseNI ACTGG 5 cut(s) 196, 269, 334, 434, 453
BseRI GAGGAG 4 cut(s) 14, 17, 20, 23
BsgI GTGCAG 2 cut(s) 223, 273
BshFI GGCC 3 cut(s) 140, 333, 432
BshNI GGYRCC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 48, 303
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 91, 449
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 3 cut(s) 140, 333, 432
Bsp143I GATC 1 cut(s) 120
BspANI GGCC 3 cut(s) 140, 333, 432
BspLI GGNNCC 3 cut(s) 113, 185, 441
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 183
BsrI ACTGG 5 cut(s) 196, 269, 334, 434, 453
BssECI CCNNGG 4 cut(s) 115, 116, 243, 474
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 117, 245
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 430
BstF5I GGATG 3 cut(s) 69, 354, 370
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 117, 245
BstSCI CCNGG 3 cut(s) 115, 243, 302
BsuRI GGCC 3 cut(s) 140, 333, 432
BtsCI GGATG 3 cut(s) 69, 354, 370
BtsI GCAGTG 2 cut(s) 277, 486
BtsIMutI CAGTG 5 cut(s) 277, 341, 357, 441, 486
Cac8I GCNNGC 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 138, 431
Csp6I GTAC 2 cut(s) 184, 199
CviJI RGCY 6 cut(s) 108, 140, 333, 392, 432, 440
CviKI_1 RGCY 6 cut(s) 108, 140, 333, 392, 432, 440
CviQI GTAC 2 cut(s) 184, 199
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraIII CACNNNGTG 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 115, 243
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 49
FaiI YATR 4 cut(s) 159, 212, 231, 287
FaqI GGGAC 1 cut(s) 179
FokI GGATG 3 cut(s) 56, 357, 361
FspBI CTAG 1 cut(s) 508
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 3 cut(s) 140, 333, 432
HapII CCGG 2 cut(s) 48, 303
Hin1I GRCGYC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 422
HpaII CCGG 2 cut(s) 48, 303
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 2 cut(s) 240, 254
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 1 cut(s) 470
KpnI GGTACC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 267, 445
MaeI CTAG 1 cut(s) 508
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 355, 466
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 1 cut(s) 409
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 9 cut(s) 32, 35, 38, 41, 44, 83, 143, 384, 488
Mox20I TGGCCA 1 cut(s) 333
MscI TGGCCA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 2 cut(s) 48, 303
MspR9I CCNGG 3 cut(s) 117, 245, 304
MvaI CCWGG 2 cut(s) 117, 245
NciI CCSGG 1 cut(s) 304
NdeII GATC 1 cut(s) 120
NlaIV GGNNCC 3 cut(s) 113, 185, 441
NmuCI GTSAC 2 cut(s) 355, 466
PasI CCCWGGG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 302
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 115, 243
PspGI CCWGG 2 cut(s) 115, 243
PspN4I GGNNCC 3 cut(s) 113, 185, 441
PspPI GGNCC 2 cut(s) 138, 431
PstNI CAGNNNCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 185, 200
RsaNI GTAC 2 cut(s) 184, 199
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 138, 431
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 117, 245, 304
SetI ASST 5 cut(s) 24, 185, 394, 473, 499
Sse9I AATT 1 cut(s) 409
SspMI CTAG 1 cut(s) 508
StyD4I CCNGG 3 cut(s) 115, 243, 302
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 473
TasI AATT 1 cut(s) 409
TatI WGTACW 1 cut(s) 198
TscAI CASTG 5 cut(s) 277, 341, 364, 441, 486
TseFI GTSAC 2 cut(s) 355, 466
Tsp45I GTSAC 2 cut(s) 355, 466
TspDTI ATGAA 5 cut(s) 160, 165, 274, 307, 365
TspRI CASTG 5 cut(s) 277, 341, 364, 441, 486
Van91I CCANNNNNTGG 1 cut(s) 91
XapI RAATTY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 1 cut(s) 508
ZraI GACGTC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.