FvH4_6g29330

glycerol

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
22625077 .. 22628022
2946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29330.t1

Sequence Viewer

Length: 1569 bp
ATGTCTAAGGAGGCAGTGTATGTTGGGTCCATTGACCAAGGAACCACCAGTACCAGATTCATAATTTATGATCGTGATTCCCGCACCGTTGGGTCTCACCAGGTCGAGTTCAACCAAATCTATCCAGAAGCAGGATGGGTGGAGCATGATCCAATGGAGATATTGGAGAGCGTGAGAGTATGTATGGCTAAGGCTCTGGACAAAGCCACTGCCGATGGCCACAACATCGACAGCGGCTTGAAGGCCATTGGGTTGACCAATCAGAGAGAGACCACTCTCATCTGGAGTAAATCCACTGGCTCTCCTCTTTACAATGCTATTGTTTGGATGGATGCTCGTACCAGTGGTGTTTGCCGAAAATTGGAGAAAGAATTATCTGGGGGAAGAACTCATTTTTCAGAGGTATGTGGTTTGCCCATAAGCACATATTTCAGTGCAGTGAAGCTGCTATGGTTGATGGAGAATGTCGATGCTGTTAAGGAGGCTATTAAATCAGAGGATGCTCTGTTTGGAACTATCGACACTTGGTTAATCTGGAATTTAACCGGTGGTCTGAACGGAGGGGTACATGTCACAGATGTCTCCAACGCGTCACGCACTATGCTCATGAATCTTAAGACTCTTGAGTGGGATCAACCCACATTGGAAACCTTGGGAATTTGCCCTAAAATTCTCCCCAAGATTGTCAGCAACTCTGAGGTCATTGGAGATATTGCCACTGGATGGCCGATTACTGGGATCCCGATTTCTGGATGTTTAGGTGATCAACATGCAGCAATGTTAGGACAGGCTTGCAGGAAAGGTGAGGCCAAAAGCACTTACGGAACTGGTGCGTTTATTCTTCTCAACACTGGTGAAGAGATAACTATGTCGAAGCATGGGCTTCTAAGCACTGTGGCATTCAAACTTGGACCTGAAGCTCAGACAAATTATGCTCTAGAAGGATCCATTGCTATTGCTGGAGCTGCAGTTCAGTGGCTTAGAGACAGTCTTGGAATTATTAAGAGTGCAAGTGAGATCGAGACATTGGCATCAGAGGTTGAATCTACTGGTGGGATTTATTTTGTGCCTGCCTTCAACGGATTATTTGCCCCCTGGTGGCGTGATGATGCTCGTGGAGTTTGTATTGGCATGACAAGGTTTACAAACAAGGCTCATATTGCTCGAGCAGTGCTTGAGAGTATGTGTTTCCAGGTGAAAGATGTGCTAGATTCAATGCACAAAGATGCTGGAGAGCAGGGAGAGGTTAAGAATGAGAAAGGAGAATTCTTGCTCAGAGTGGATGGTGGCGCTACTGTTAATAACCTTTTAATGCAGATCCAGGCGGACGTGATGGGCAGCCCAGTTGTAAGGCCAGCTGACACAGAGACAACGGCTCTTGGAGCAGCTTATGCTGCTGGATTAGCTGTTGGTGTTTGGACTGAAGAAGAGATCTTTGCTTCTGAAGAGAAGACGAAGACTGCCACCACCTTCCGACCGAAAATTGGTGAGGAGTTGAGGAAGAAGAAGTTGGAGTCATGGTGCAAAGCTGTTTCAAGAACTTTTGATTTGGCCGATCTTTCGCTTTGA

Protein Analysis

523

Amino Acids

56.64

Weight (kDa)

5.22

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 7 - 262 5e-71 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 271 - 469 4e-44 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 723
AccII CGCG 1 cut(s) 590
AciI CCGC 3 cut(s) 82, 234, 1325
AclWI GGATC 7 cut(s) 143, 639, 733, 746, 939, 952, 1312
AcoI YGGCCR 3 cut(s) 217, 725, 1551
AcsI RAATTY 4 cut(s) 538, 657, 669, 1265
AcuI CTGAAG 3 cut(s) 936, 1443, 1464
AfaI GTAC 3 cut(s) 52, 340, 567
AfiI CCNNNNNNNGG 7 cut(s) 131, 361, 723, 734, 749, 1098, 1484
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 2 cut(s) 568, 588
AgeI ACCGGT 1 cut(s) 545
AgsI TTSAA 7 cut(s) 112, 241, 904, 1043, 1078, 1215, 1536
AjiI CACGTC 1 cut(s) 1330
AjnI CCWGG 4 cut(s) 99, 1094, 1191, 1320
AjuI GAANNNNNNNTTGG 2 cut(s) 1493, 1525
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 7 cut(s) 445, 920, 965, 1358, 1388, 1406, 1529
AluI AGCT 7 cut(s) 445, 920, 965, 1358, 1388, 1406, 1529
Alw26I GTCTC 6 cut(s) 99, 263, 586, 978, 1016, 1361
AlwI GGATC 7 cut(s) 143, 639, 733, 746, 939, 952, 1312
Ama87I CYCGRG 1 cut(s) 1164
AoxI GGCC 6 cut(s) 217, 243, 725, 807, 1352, 1551
ApeKI GCWGC 6 cut(s) 445, 773, 965, 1338, 1385, 1394
ApoI RAATTY 4 cut(s) 538, 657, 669, 1265
AsiGI ACCGGT 1 cut(s) 545
AspLEI GCGC 1 cut(s) 1292
AspS9I GGNCC 2 cut(s) 27, 911
AsuHPI GGTGA 6 cut(s) 89, 773, 815, 866, 1207, 1499
AvaI CYCGRG 1 cut(s) 1164
AvaII GGWCC 2 cut(s) 27, 911
BalI TGGCCA 1 cut(s) 219
BamHI GGATCC 2 cut(s) 738, 944
BauI CACGAG 1 cut(s) 1113
BbsI GAAGAC 2 cut(s) 1457, 1463
BbvI GCAGC 6 cut(s) 432, 785, 952, 1350, 1381, 1397
BccI CCATC 7 cut(s) 129, 209, 322, 451, 717, 1277, 1327
BceAI ACGGC 1 cut(s) 1389
BciT130I CCWGG 4 cut(s) 101, 1096, 1193, 1322
BclI TGATCA 1 cut(s) 763
BcoDI GTCTC 6 cut(s) 99, 263, 586, 978, 1016, 1361
BfaI CTAG 2 cut(s) 938, 1208
BfmI CTRYAG 1 cut(s) 966
BfoI RGCGCY 1 cut(s) 1293
BfrI CTTAAG 1 cut(s) 614
BglII AGATCT 1 cut(s) 1431
BisI GCNGC 7 cut(s) 235, 446, 774, 966, 1339, 1386, 1395
BlsI GCNGC 7 cut(s) 236, 447, 775, 967, 1340, 1387, 1396
Bme1390I CCNGG 4 cut(s) 101, 1096, 1193, 1322
Bme18I GGWCC 2 cut(s) 27, 911
BmeT110I CYCGRG 1 cut(s) 1164
BmgBI CACGTC 1 cut(s) 1330
BmgT120I GGNCC 2 cut(s) 27, 911
BmiI GGNNCC 4 cut(s) 28, 43, 740, 946
BmrFI CCNGG 4 cut(s) 101, 1096, 1193, 1322
BmrI ACTGGG 2 cut(s) 744, 1337
BmsI GCATC 6 cut(s) 322, 460, 490, 1040, 1099, 1216
BmuI ACTGGG 2 cut(s) 744, 1337
BpiI GAAGAC 2 cut(s) 1457, 1463
BpmI CTGGAG 3 cut(s) 304, 981, 1251
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 644, 1196
BsaI GGTCTC 2 cut(s) 99, 263
BsaJI CCNNGG 3 cut(s) 37, 651, 1094
BsaWI WCCGGW 1 cut(s) 545
BsaXI ACNNNNNCTCC 7 cut(s) 32, 286, 316, 954, 984, 1505, 1535
Bsc4I CCNNNNNNNGG 7 cut(s) 131, 361, 723, 734, 749, 1098, 1484
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 9 cut(s) 48, 301, 342, 724, 739, 832, 856, 1054, 1343
Bse3DI GCAATG 2 cut(s) 783, 948
BseBI CCWGG 4 cut(s) 101, 1096, 1193, 1322
BseDI CCNNGG 3 cut(s) 37, 651, 1094
BseGI GGATG 7 cut(s) 140, 333, 337, 505, 728, 758, 1288
BseLI CCNNNNNNNGG 7 cut(s) 131, 361, 723, 734, 749, 1098, 1484
BseMI GCAATG 2 cut(s) 783, 948
BseMII CTCAG 3 cut(s) 687, 935, 1288
BseNI ACTGG 9 cut(s) 48, 301, 342, 724, 739, 832, 856, 1054, 1343
BseRI GAGGAG 2 cut(s) 294, 1505
BseXI GCAGC 6 cut(s) 432, 785, 952, 1350, 1381, 1397
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 590
Bsh1285I CGRYCG 1 cut(s) 1478
BshFI GGCC 6 cut(s) 219, 245, 727, 809, 1354, 1553
BshTI ACCGGT 1 cut(s) 545
BsiEI CGRYCG 1 cut(s) 1478
BsiHKCI CYCGRG 1 cut(s) 1164
BsiSI CCGG 1 cut(s) 546
BslI CCNNNNNNNGG 7 cut(s) 131, 361, 723, 734, 749, 1098, 1484
BsmAI GTCTC 6 cut(s) 99, 263, 586, 978, 1016, 1361
BsmI GAATGC 1 cut(s) 899
BsnI GGCC 6 cut(s) 219, 245, 727, 809, 1354, 1553
Bso31I GGTCTC 2 cut(s) 99, 263
BsoBI CYCGRG 1 cut(s) 1164
BspACI CCGC 3 cut(s) 82, 234, 1325
BspANI GGCC 6 cut(s) 219, 245, 727, 809, 1354, 1553
BspCNI CTCAG 3 cut(s) 688, 934, 1287
BspFNI CGCG 1 cut(s) 590
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 28, 43, 740, 946
BspMAI CTGCAG 1 cut(s) 970
BspPI GGATC 7 cut(s) 143, 639, 733, 746, 939, 952, 1312
BspTI CTTAAG 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 99, 263
BsrDI GCAATG 2 cut(s) 783, 948
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 9 cut(s) 48, 301, 342, 724, 739, 832, 856, 1054, 1343
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 3 cut(s) 37, 651, 1094
BssSI CACGAG 1 cut(s) 1113
BssT1I CCWWGG 2 cut(s) 37, 651
Bst2BI CACGAG 1 cut(s) 1113
Bst2UI CCWGG 4 cut(s) 101, 1096, 1193, 1322
Bst4CI ACNGT 4 cut(s) 88, 895, 989, 1297
Bst6I CTCTTC 3 cut(s) 852, 1422, 1440
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 1391
BstC8I GCNNGC 3 cut(s) 793, 1071, 1356
BstDEI CTNAG 7 cut(s) 6, 189, 696, 887, 921, 980, 1274
BstF5I GGATG 7 cut(s) 140, 333, 337, 505, 728, 758, 1288
BstFNI CGCG 1 cut(s) 590
BstH2I RGCGCY 1 cut(s) 1293
BstHHI GCGC 1 cut(s) 1292
BstMAI GTCTC 6 cut(s) 99, 263, 586, 978, 1016, 1361
BstMCI CGRYCG 1 cut(s) 1478
BstMWI GCNNNNNNNGC 6 cut(s) 965, 1160, 1382, 1391, 1394, 1403
BstNI CCWGG 4 cut(s) 101, 1096, 1193, 1322
BstNSI RCATGY 2 cut(s) 572, 773
BstSCI CCNGG 4 cut(s) 99, 1094, 1191, 1320
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 6 cut(s) 432, 785, 952, 1350, 1381, 1397
BstV2I GAAGAC 2 cut(s) 1457, 1463
BstX2I RGATCY 4 cut(s) 738, 944, 1317, 1431
BstYI RGATCY 4 cut(s) 738, 944, 1317, 1431
BsuRI GGCC 6 cut(s) 219, 245, 727, 809, 1354, 1553
BtrI CACGTC 1 cut(s) 1330
BtsCI GGATG 7 cut(s) 140, 333, 337, 505, 728, 758, 1288
BtsI GCAGTG 4 cut(s) 21, 207, 444, 1176
Cac8I GCNNGC 3 cut(s) 793, 1071, 1356
CciI TCATGA 1 cut(s) 606
CfoI GCGC 1 cut(s) 1292
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 27, 911
CseI GACGC 1 cut(s) 579
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 3 cut(s) 51, 339, 566
CspAI ACCGGT 1 cut(s) 545
CviAII CATG 7 cut(s) 146, 569, 607, 770, 878, 1132, 1518
CviQI GTAC 3 cut(s) 51, 339, 566
DdeI CTNAG 7 cut(s) 6, 189, 696, 887, 921, 980, 1274
EaeI YGGCCR 3 cut(s) 217, 725, 1551
Eam1104I CTCTTC 3 cut(s) 852, 1422, 1440
EarI CTCTTC 3 cut(s) 852, 1422, 1440
EciI GGCGGA 1 cut(s) 1340
Eco130I CCWWGG 2 cut(s) 37, 651
Eco31I GGTCTC 2 cut(s) 99, 263
Eco47I GGWCC 2 cut(s) 27, 911
Eco57I CTGAAG 3 cut(s) 936, 1443, 1464
Eco88I CYCGRG 1 cut(s) 1164
EcoRI GAATTC 1 cut(s) 1265
EcoRII CCWGG 4 cut(s) 99, 1094, 1191, 1320
EcoT14I CCWWGG 2 cut(s) 37, 651
ErhI CCWWGG 2 cut(s) 37, 651
FaeI CATG 7 cut(s) 149, 572, 610, 773, 881, 1135, 1521
FatI CATG 7 cut(s) 145, 568, 606, 769, 877, 1131, 1517
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 7 cut(s) 235, 446, 774, 966, 1339, 1386, 1395
FokI GGATG 7 cut(s) 147, 340, 344, 512, 735, 765, 1295
Fsp4HI GCNGC 7 cut(s) 235, 446, 774, 966, 1339, 1386, 1395
FspBI CTAG 2 cut(s) 938, 1208
GlaI GCGC 1 cut(s) 1291
GluI GCNGC 7 cut(s) 235, 446, 774, 966, 1339, 1386, 1395
GsuI CTGGAG 3 cut(s) 304, 981, 1251
HaeII RGCGCY 1 cut(s) 1293
HaeIII GGCC 6 cut(s) 219, 245, 727, 809, 1354, 1553
HapII CCGG 1 cut(s) 546
HgaI GACGC 1 cut(s) 579
HhaI GCGC 1 cut(s) 1292
Hin1II CATG 7 cut(s) 149, 572, 610, 773, 881, 1135, 1521
Hin6I GCGC 1 cut(s) 1290
HinP1I GCGC 1 cut(s) 1290
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 7 cut(s) 57, 77, 610, 619, 1043, 1211, 1514
HpaII CCGG 1 cut(s) 546
HphI GGTGA 6 cut(s) 89, 773, 815, 866, 1207, 1499
Hpy166II GTNNAC 2 cut(s) 255, 1143
Hpy8I GTNNAC 2 cut(s) 255, 1143
HpyAV CCTTC 4 cut(s) 235, 935, 1084, 1480
HpyCH4III ACNGT 4 cut(s) 88, 895, 989, 1297
HpyCH4IV ACGT 1 cut(s) 1329
HpyCH4V TGCA 8 cut(s) 437, 773, 795, 968, 1010, 1219, 1315, 1524
HpyF10VI GCNNNNNNNGC 6 cut(s) 965, 1160, 1382, 1391, 1394, 1403
HpyF3I CTNAG 7 cut(s) 6, 189, 696, 887, 921, 980, 1274
HpySE526I ACGT 1 cut(s) 1329
Hsp92II CATG 7 cut(s) 149, 572, 610, 773, 881, 1135, 1521
HspAI GCGC 1 cut(s) 1290
Ksp22I TGATCA 1 cut(s) 763
LmnI GCTCC 3 cut(s) 142, 962, 1382
Lsp1109I GCAGC 6 cut(s) 432, 785, 952, 1350, 1381, 1397
LweI GCATC 6 cut(s) 322, 460, 490, 1040, 1099, 1216
MabI ACCWGGT 1 cut(s) 99
MaeI CTAG 2 cut(s) 938, 1208
MaeII ACGT 1 cut(s) 1329
MaeIII GTNAC 2 cut(s) 571, 591
MflI RGATCY 4 cut(s) 738, 944, 1317, 1431
MlsI TGGCCA 1 cut(s) 219
MluI ACGCGT 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 2 cut(s) 613, 1523
MmeI TCCRAC 3 cut(s) 609, 1491, 1498
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
MseI TTAA 9 cut(s) 477, 489, 530, 542, 615, 1002, 1248, 1299, 1310
MslI CAYNNNNRTG 1 cut(s) 1224
Msp20I TGGCCA 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 234, 1358
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 4 cut(s) 101, 1096, 1193, 1322
Mva1269I GAATGC 1 cut(s) 899
MvaI CCWGG 4 cut(s) 101, 1096, 1193, 1322
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 6 cut(s) 965, 1160, 1382, 1391, 1394, 1403
NlaIII CATG 7 cut(s) 149, 572, 610, 773, 881, 1135, 1521
NlaIV GGNNCC 4 cut(s) 28, 43, 740, 946
NmuCI GTSAC 2 cut(s) 571, 591
NspI RCATGY 2 cut(s) 572, 773
PaeR7I CTCGAG 1 cut(s) 1164
PagI TCATGA 1 cut(s) 606
PciI ACATGT 1 cut(s) 568
PctI GAATGC 1 cut(s) 899
PfeI GAWTC 5 cut(s) 57, 77, 610, 1043, 1211
PflMI CCANNNNNTGG 1 cut(s) 723
PinAI ACCGGT 1 cut(s) 545
PkrI GCNGC 7 cut(s) 236, 447, 775, 967, 1340, 1387, 1396
PleI GAGTC 2 cut(s) 613, 1522
PpsI GAGTC 2 cut(s) 613, 1522
PscI ACATGT 1 cut(s) 568
Psp6I CCWGG 4 cut(s) 99, 1094, 1191, 1320
PspGI CCWGG 4 cut(s) 99, 1094, 1191, 1320
PspN4I GGNNCC 4 cut(s) 28, 43, 740, 946
PspPI GGNCC 2 cut(s) 27, 911
PspXI VCTCGAGB 1 cut(s) 1164
PsrI GAACNNNNNNTAC 2 cut(s) 34, 66
PstI CTGCAG 1 cut(s) 970
PsuI RGATCY 4 cut(s) 738, 944, 1317, 1431
PvuII CAGCTG 1 cut(s) 1358
RsaI GTAC 3 cut(s) 52, 340, 567
RsaNI GTAC 3 cut(s) 51, 339, 566
RseI CAYNNNNRTG 1 cut(s) 1224
SaqAI TTAA 9 cut(s) 477, 489, 530, 542, 615, 1002, 1248, 1299, 1310
SatI GCNGC 7 cut(s) 235, 446, 774, 966, 1339, 1386, 1395
Sau96I GGNCC 2 cut(s) 27, 911
SchI GAGTC 2 cut(s) 613, 1523
ScrFI CCNGG 4 cut(s) 101, 1096, 1193, 1322
SexAI ACCWGGT 1 cut(s) 99
SfaNI GCATC 6 cut(s) 322, 460, 490, 1040, 1099, 1216
SfcI CTRYAG 1 cut(s) 966
Sfr274I CTCGAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 27, 911
SlaI CTCGAG 1 cut(s) 1164
SmiMI CAYNNNNRTG 1 cut(s) 1224
SmlI CTYRAG 4 cut(s) 614, 623, 1164, 1175
SmoI CTYRAG 4 cut(s) 614, 623, 1164, 1175
SsiI CCGC 3 cut(s) 82, 234, 1325
SspMI CTAG 2 cut(s) 938, 1208
StyD4I CCNGG 4 cut(s) 99, 1094, 1191, 1320
StyI CCWWGG 2 cut(s) 37, 651
TaaI ACNGT 4 cut(s) 88, 895, 989, 1297
TaiI ACGT 1 cut(s) 1332
TaqI TCGA 7 cut(s) 105, 228, 468, 519, 872, 1020, 1165
TaqII GACCGA 1 cut(s) 1492
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 5 cut(s) 57, 77, 610, 1043, 1211
Tru1I TTAA 9 cut(s) 477, 489, 530, 542, 615, 1002, 1248, 1299, 1310
Tru9I TTAA 9 cut(s) 477, 489, 530, 542, 615, 1002, 1248, 1299, 1310
TseFI GTSAC 2 cut(s) 571, 591
TseI GCWGC 6 cut(s) 445, 773, 965, 1338, 1385, 1394
Tsp45I GTSAC 2 cut(s) 571, 591
TspDTI ATGAA 2 cut(s) 49, 623
TspGWI ACGGA 3 cut(s) 573, 837, 1095
Van91I CCANNNNNTGG 1 cut(s) 723
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 27, 911
XapI RAATTY 4 cut(s) 538, 657, 669, 1265
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 2 cut(s) 572, 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 1164
XspI CTAG 2 cut(s) 938, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.