Rh6AG233000

glycerol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007805
Physical Location & Seq
Forward (+)
41708706 .. 41710098
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG233000.1

Sequence Viewer

Length: 411 bp
ATGAGCATAGTGGGTGATGCATTGGAGACATCCGTTACATGTACCCCTCCCATGACACCACCGGTTAAATTCCACATGAAGGTTCATTTCGCTACTTTGAGATGGGTAGAGCATGATCCAATGGAGATATTGGAGAGCGTGACACTTTGTATGGCTATGGCTCTGGACAAAGCCATAGCCAACGGGCACAACATTGATGGTAGATTGAAGGCGATTGGGTTGACCAATCAGAGAGAGACCACTCTCGTTTGGAGCAAATCCACTGGCTGTCCTCTTTACAATGCTGTTGTTTGGATGGATGCTGGTACCTGTTTTTTTGCAGGTACTTTGAAAATAACATCTGAAACCATTTATGGCAAGCTGGCTTTAATTTTCTTAATGCACAATTGTGAGCATTTTTGGATTAAGTAA

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

6.57

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 26 - 110 5.1e-14 FGGY family of carbohydrate kinases, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 68
AfaI GTAC 3 cut(s) 43, 307, 325
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 208, 331
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 20, 230
AlwI GGATC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 61
Asp718I GGTACC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 305
BccI CCATC 3 cut(s) 96, 191, 289
BcoDI GTCTC 2 cut(s) 20, 230
BfuAI ACCTGC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 307
BmsI GCATC 2 cut(s) 7, 289
BsaI GGTCTC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 268
BseGI GGATG 3 cut(s) 29, 300, 304
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 305
BshTI ACCGGT 1 cut(s) 61
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 20, 230
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 359, 363
BstF5I GGATG 3 cut(s) 29, 300, 304
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 20, 230
BstMBI GATC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 29, 300, 304
BtsIMutI CAGTG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 359, 363
Cfr10I RCCGGY 1 cut(s) 61
Csp6I GTAC 3 cut(s) 42, 306, 324
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 4 cut(s) 39, 52, 76, 113
CviJI RGCY 7 cut(s) 155, 161, 173, 179, 267, 361, 365
CviKI_1 RGCY 7 cut(s) 155, 161, 173, 179, 267, 361, 365
CviQI GTAC 3 cut(s) 42, 306, 324
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 230
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 4 cut(s) 42, 55, 79, 116
FaiI YATR 9 cut(s) 8, 40, 53, 77, 114, 152, 158, 176, 354
FatI CATG 4 cut(s) 38, 51, 75, 112
FokI GGATG 3 cut(s) 16, 307, 311
HapII CCGG 1 cut(s) 62
Hin1II CATG 4 cut(s) 42, 55, 79, 116
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 231, 343
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 73, 202
HpyCH4V TGCA 3 cut(s) 20, 320, 382
Hsp92II CATG 4 cut(s) 42, 55, 79, 116
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 75, 149, 249, 288, 306, 322, 347
LweI GCATC 2 cut(s) 7, 289
MaeIII GTNAC 2 cut(s) 34, 139
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 3 cut(s) 68, 369, 385
MnlI CCTC 2 cut(s) 57, 282
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 4 cut(s) 66, 368, 377, 405
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 385
NdeII GATC 1 cut(s) 115
NlaIII CATG 4 cut(s) 42, 55, 79, 116
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 387
PciI ACATGT 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 61
PscI ACATGT 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 307
RsaI GTAC 3 cut(s) 43, 307, 325
RsaNI GTAC 3 cut(s) 42, 306, 324
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 4 cut(s) 66, 368, 377, 405
Sau3AI GATC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 84, 311, 325, 363
SfaNI GCATC 2 cut(s) 7, 289
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 3 cut(s) 68, 369, 385
TasI AATT 3 cut(s) 68, 369, 385
Tru1I TTAA 4 cut(s) 66, 368, 377, 405
Tru9I TTAA 4 cut(s) 66, 368, 377, 405
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 74, 92
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.