RLG00000019410

glycerol

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
51683649 .. 51695152
11504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019410

Sequence Viewer

Length: 1782 bp
ATGATCATTGCCGGCATCAAGATCCCTAAGATCCAGTTCAACAATTCCCTTGTAGTGAAGTTGGGAGGTGGTAAGCTACTTAGTCGGAGCATCGAGGTCTTGGTAGGGGTTGTTGAGCTTTGTGGCAGCGACGTTGATTTGATCATCGACGGCGATGTTCTGATGGCGGCTACCAGCCCGAAAACCCCTAAACCCTCCTATGTGTCGATCTTCTTTGATGACTCTCCCCTCCCGATTTCTGAGGAACCCTTTCTCCGAGGGCTTGAGAGGTGTAAAACAAACTTGGTGGGACGTGTTACATCCCCTATCAAGACTCCTGATCTTGTTCAACAGTTGGGGAAATGTTGGGCCTCTATGAGCGACTGGACTGTCGCGCCTCTCGACAAGGGTTTTTTCATGGTTCAATTCAAAACCCTAGCTGATATCAACTGTGGAATTGTAGGCCATGCTGCTTCCTCATGTCATTCTGTGGTTAATGCGGTAGACTTTGATGCTTCCACTGAGCGTGGGAGATCTCTTCATCGCTCTGCAGCTCCGAACGAACGTGTAGCATCTACAACAGCCCACATCACTTCGTCGATTGACTTGGTTGCTGCGCCAATTACTGGGCATACTGGGAAGAGGGAAGAGTCTTCTACCTCTTTTGATAGCATTCCTCAAGGCTTACAGAGGAAGGACTTGGTTGAGGATCTCCCTGCATTAAGTTCTAACACTACACCAGTAGCCTCAGAGGCAGCTCATCTTATGTCTTCCCATCAACTGGATGCAGACTCTGACTCTAAAGAGGAAGGCGAGTTCACCCCCGTGGTCTCTAAGAAAGCAAAAAAGAGATTAAAGTTAGCAGAAAAGACAAAGGAAAAACCTGCAGCTGAGATATGTGGTTTGCCCATAAGCACCTATTTCAGTGCTATGAAGCTGCTATGGTTGATGGAGAATGTCGATACTGTTAAGGGTGCTATTAAATCAGGGGATGCTCTGTTTGGAACTATAGACACTTGGTTAATCTGGAACTTAACCGGTGGTCTCAAGGGAGGGGTACATGTCACAGATGTCTCCAACGCGTCACGCACTATGCTCAAGAATCTCAAGACTCTTGAGTGGGATCAACCCACGTTGGATACCTTGGGAATTTCTGCTACAATTCTCCCCAAAATTGTCAGCAACTCTGAGGTCATTGGAAATATTGCCATTGGATGGCCAATTACTGGGATCCCAATTTCTGGATGTTTAGAGATAACTCTGTCGAAGCATGGGCTTCTAAGCACTTTGTCATTCAAACTTGGACCTAAAGCTCCTGTAAATTATGCTCTAGAAGGATCCATTGCTATTGCTGGAGCTGCAGTTCAGTGGGTTAGAGACGGTCTTGGGATTATTAAGAGTGCAAGTGAGATTGAGGCATTGGCATGTCAGGTGAAAGATGTGTTAGATTCAATGCACAAAGATGCCGGAGAGAGGGGAGAGGTTAAGAATGAGATGGGAGAGTTCTTGCTCAGAGTGGATGGTGGTGCTACTGTTGATAACCTTCTAGTGCAGATCCAGGCAGACCTGATGGGCAGCCCAGTTGTAAGGCCAGCTGACACTGAGACAACAGCTCTCGGAGCTGCTTATGCGGCTGGATTAGCTGCTGGTGTTTGGACTGAAAAGGAGATCTATGCTTCTGAAGACAAGACGACGACTTCCACCACCTTCCGTCCAAAAATAGGTGAAGAGTTGAGGAAGAAGTTGGAGTCGTGGTCCAAAGCCGTTTCAAGAACTTTTGATTTGGCCGATCTTTCGCTTTGA

Protein Analysis

594

Amino Acids

63.34

Weight (kDa)

5.63

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 279 - 410 3.9e-28 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 464 - 542 6.9e-12 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 871
AccB7I CCANNNNNTGG 5 cut(s) 605, 760, 1194, 1205, 1220
AccI GTMKAC 1 cut(s) 483
AccII CGCG 2 cut(s) 374, 1061
AciI CCGC 3 cut(s) 167, 479, 1610
AclWI GGATC 9 cut(s) 16, 25, 696, 1110, 1204, 1217, 1311, 1324, 1528
AcoI YGGCCR 2 cut(s) 1196, 1764
AcsI RAATTY 1 cut(s) 1128
AcuI CTGAAG 1 cut(s) 1680
AfaI GTAC 1 cut(s) 1038
AfiI CCNNNNNNNGG 7 cut(s) 605, 760, 1194, 1205, 1220, 1452, 1700
AflIII ACRYGT 4 cut(s) 292, 544, 1039, 1059
AgeI ACCGGT 1 cut(s) 1016
AgsI TTSAA 7 cut(s) 40, 329, 404, 409, 1276, 1431, 1749
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 1 cut(s) 1536
AleI CACNNNNGTG 1 cut(s) 803
AloI GAACNNNNNNTCC 6 cut(s) 237, 269, 779, 811, 1326, 1358
Alw26I GTCTC 5 cut(s) 814, 1028, 1057, 1350, 1577
AlwI GGATC 9 cut(s) 16, 25, 696, 1110, 1204, 1217, 1311, 1324, 1528
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 5 cut(s) 348, 442, 1196, 1568, 1764
ApoI RAATTY 1 cut(s) 1128
AsiGI ACCGGT 1 cut(s) 1016
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 376, 598
AspS9I GGNCC 3 cut(s) 348, 1283, 1734
AsuHPI GGTGA 3 cut(s) 790, 1423, 1715
AvaII GGWCC 2 cut(s) 1283, 1734
BalI TGGCCA 1 cut(s) 1198
BamHI GGATCC 2 cut(s) 1209, 1316
BbsI GAAGAC 3 cut(s) 624, 741, 1668
BccI CCATC 7 cut(s) 157, 762, 922, 1188, 1468, 1493, 1543
BceAI ACGGC 2 cut(s) 166, 1727
BciT130I CCWGG 1 cut(s) 1538
BciVI GTATCC 1 cut(s) 1111
BclI TGATCA 2 cut(s) 3, 141
BcoDI GTCTC 5 cut(s) 814, 1028, 1057, 1350, 1577
BfaI CTAG 3 cut(s) 416, 1310, 1526
BfmI CTRYAG 4 cut(s) 528, 864, 987, 1338
BfuAI ACCTGC 1 cut(s) 871
BfuI GTATCC 1 cut(s) 1111
BglI GCCNNNNNGGC 1 cut(s) 731
BglII AGATCT 2 cut(s) 512, 1647
Bme1390I CCNGG 1 cut(s) 1538
Bme18I GGWCC 2 cut(s) 1283, 1734
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 3 cut(s) 348, 1283, 1734
BmiI GGNNCC 3 cut(s) 246, 1211, 1318
BmrFI CCNGG 1 cut(s) 1538
BmrI ACTGGG 4 cut(s) 615, 624, 1215, 1553
BmsI GCATC 7 cut(s) 24, 99, 481, 560, 754, 961, 1432
BmuI ACTGGG 4 cut(s) 615, 624, 1215, 1553
BpiI GAAGAC 3 cut(s) 624, 741, 1668
BpmI CTGGAG 1 cut(s) 1353
BpuEI CTTGAG 6 cut(s) 284, 642, 1010, 1061, 1070, 1115
BsaI GGTCTC 2 cut(s) 814, 1028
BsaJI CCNNGG 3 cut(s) 256, 804, 1122
BsaWI WCCGGW 1 cut(s) 1016
BsaXI ACNNNNNCTCC 6 cut(s) 237, 267, 1326, 1356, 1718, 1748
Bsc4I CCNNNNNNNGG 7 cut(s) 605, 760, 1194, 1205, 1220, 1452, 1700
Bse118I RCCGGY 2 cut(s) 11, 1016
Bse1I ACTGG 8 cut(s) 34, 368, 610, 619, 719, 765, 1210, 1559
Bse3DI GCAATG 2 cut(s) 6, 1320
BseBI CCWGG 1 cut(s) 1538
BseDI CCNNGG 3 cut(s) 256, 804, 1122
BseGI GGATG 6 cut(s) 299, 769, 976, 1199, 1229, 1504
BseLI CCNNNNNNNGG 7 cut(s) 605, 760, 1194, 1205, 1220, 1452, 1700
BseMI GCAATG 2 cut(s) 6, 1320
BseMII CTCAG 7 cut(s) 231, 492, 741, 861, 1158, 1504, 1572
BseNI ACTGG 8 cut(s) 34, 368, 610, 619, 719, 765, 1210, 1559
BsgI GTGCAG 1 cut(s) 1550
Bsh1236I CGCG 2 cut(s) 374, 1061
BshFI GGCC 5 cut(s) 350, 444, 1198, 1570, 1766
BshTI ACCGGT 1 cut(s) 1016
BsiSI CCGG 3 cut(s) 12, 1017, 1446
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 7 cut(s) 605, 760, 1194, 1205, 1220, 1452, 1700
BsmAI GTCTC 5 cut(s) 814, 1028, 1057, 1350, 1577
BsmBI CGTCTC 1 cut(s) 1350
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 5 cut(s) 350, 444, 1198, 1570, 1766
Bso31I GGTCTC 2 cut(s) 814, 1028
BspACI CCGC 3 cut(s) 167, 479, 1610
BspANI GGCC 5 cut(s) 350, 444, 1198, 1570, 1766
BspCNI CTCAG 7 cut(s) 232, 493, 740, 862, 1159, 1503, 1573
BspFNI CGCG 2 cut(s) 374, 1061
BspLI GGNNCC 3 cut(s) 246, 1211, 1318
BspMAI CTGCAG 3 cut(s) 532, 868, 1342
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 9 cut(s) 16, 25, 696, 1110, 1204, 1217, 1311, 1324, 1528
BspTNI GGTCTC 2 cut(s) 814, 1028
BsrDI GCAATG 2 cut(s) 6, 1320
BsrFI RCCGGY 2 cut(s) 11, 1016
BsrI ACTGG 8 cut(s) 34, 368, 610, 619, 719, 765, 1210, 1559
BssAI RCCGGY 2 cut(s) 11, 1016
BssECI CCNNGG 3 cut(s) 256, 804, 1122
BssT1I CCWWGG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 1538
Bst4CI ACNGT 6 cut(s) 333, 370, 431, 946, 1361, 1513
Bst6I CTCTTC 4 cut(s) 522, 614, 621, 1701
BstC8I GCNNGC 2 cut(s) 13, 1572
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 6 cut(s) 299, 769, 976, 1199, 1229, 1504
BstFNI CGCG 2 cut(s) 374, 1061
BstHHI GCGC 2 cut(s) 376, 598
BstMAI GTCTC 5 cut(s) 814, 1028, 1057, 1350, 1577
BstMWI GCNNNNNNNGC 6 cut(s) 731, 1337, 1598, 1607, 1610, 1619
BstNI CCWGG 1 cut(s) 1538
BstNSI RCATGY 2 cut(s) 1043, 1407
BstSCI CCNGG 1 cut(s) 1536
BstSFI CTRYAG 4 cut(s) 528, 864, 987, 1338
BstUI CGCG 2 cut(s) 374, 1061
BstV2I GAAGAC 3 cut(s) 624, 741, 1668
BstX2I RGATCY 8 cut(s) 21, 30, 512, 688, 1209, 1316, 1533, 1647
BstYI RGATCY 8 cut(s) 21, 30, 512, 688, 1209, 1316, 1533, 1647
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 5 cut(s) 350, 444, 1198, 1570, 1766
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 2 cut(s) 168, 506
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 6 cut(s) 299, 769, 976, 1199, 1229, 1504
BtsIMutI CAGTG 4 cut(s) 498, 910, 1352, 1578
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 2 cut(s) 13, 1572
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 376, 598
Cfr10I RCCGGY 2 cut(s) 11, 1016
Cfr13I GGNCC 3 cut(s) 348, 1283, 1734
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 1 cut(s) 1037
CspAI ACCGGT 1 cut(s) 1016
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 6 cut(s) 397, 446, 459, 1040, 1250, 1404
CviQI GTAC 1 cut(s) 1037
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 1196, 1764
Eam1104I CTCTTC 4 cut(s) 522, 614, 621, 1701
EarI CTCTTC 4 cut(s) 522, 614, 621, 1701
Eco130I CCWWGG 1 cut(s) 1122
Eco31I GGTCTC 2 cut(s) 814, 1028
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 1283, 1734
Eco57I CTGAAG 1 cut(s) 1680
EcoRII CCWGG 1 cut(s) 1536
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 1122
Esp3I CGTCTC 1 cut(s) 1350
FaeI CATG 6 cut(s) 400, 449, 462, 1043, 1253, 1407
FaqI GGGAC 1 cut(s) 303
FatI CATG 6 cut(s) 396, 445, 458, 1039, 1249, 1403
FbaI TGATCA 2 cut(s) 3, 141
FblI GTMKAC 1 cut(s) 483
FokI GGATG 6 cut(s) 286, 776, 983, 1206, 1236, 1511
FspBI CTAG 3 cut(s) 416, 1310, 1526
GlaI GCGC 2 cut(s) 375, 597
GsuI CTGGAG 1 cut(s) 1353
HaeIII GGCC 5 cut(s) 350, 444, 1198, 1570, 1766
HapII CCGG 3 cut(s) 12, 1017, 1446
HgaI GACGC 1 cut(s) 1050
HhaI GCGC 2 cut(s) 376, 598
Hin1II CATG 6 cut(s) 400, 449, 462, 1043, 1253, 1407
Hin6I GCGC 2 cut(s) 374, 596
HinP1I GCGC 2 cut(s) 374, 596
HinfI GANTC 9 cut(s) 221, 313, 629, 770, 776, 1081, 1090, 1427, 1727
HpaII CCGG 3 cut(s) 12, 1017, 1446
HphI GGTGA 3 cut(s) 790, 1423, 1715
Hpy166II GTNNAC 2 cut(s) 484, 798
Hpy8I GTNNAC 2 cut(s) 484, 798
Hpy99I CGWCG 4 cut(s) 134, 152, 580, 1675
HpyAV CCTTC 5 cut(s) 667, 782, 1307, 1532, 1696
HpyCH4III ACNGT 6 cut(s) 333, 370, 431, 946, 1361, 1513
HpyCH4IV ACGT 4 cut(s) 132, 292, 544, 1112
HpyCH4V TGCA 8 cut(s) 530, 698, 767, 866, 1340, 1382, 1435, 1531
HpyF10VI GCNNNNNNNGC 6 cut(s) 731, 1337, 1598, 1607, 1610, 1619
HpySE526I ACGT 4 cut(s) 132, 292, 544, 1112
Hsp92II CATG 6 cut(s) 400, 449, 462, 1043, 1253, 1407
HspAI GCGC 2 cut(s) 374, 596
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 2 cut(s) 3, 141
LmnI GCTCC 5 cut(s) 87, 538, 1297, 1334, 1598
LweI GCATC 7 cut(s) 24, 99, 481, 560, 754, 961, 1432
MaeI CTAG 3 cut(s) 416, 1310, 1526
MaeII ACGT 4 cut(s) 132, 292, 544, 1112
MaeIII GTNAC 3 cut(s) 295, 1042, 1062
MboII GAAGA 9 cut(s) 202, 509, 624, 631, 638, 741, 1673, 1718, 1729
MflI RGATCY 8 cut(s) 21, 30, 512, 688, 1209, 1316, 1533, 1647
MlsI TGGCCA 1 cut(s) 1198
MluI ACGCGT 1 cut(s) 1059
MluNI TGGCCA 1 cut(s) 1198
MlyI GAGTC 7 cut(s) 215, 307, 638, 764, 770, 1084, 1736
MmeI TCCRAC 4 cut(s) 65, 1080, 1095, 1704
Mox20I TGGCCA 1 cut(s) 1198
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 1198
MseI TTAA 9 cut(s) 474, 701, 833, 948, 960, 1001, 1013, 1374, 1464
MslI CAYNNNNRTG 3 cut(s) 803, 1402, 1440
Msp20I TGGCCA 1 cut(s) 1198
MspA1I CMGCKG 2 cut(s) 869, 1574
MspI CCGG 3 cut(s) 12, 1017, 1446
MspR9I CCNGG 1 cut(s) 1538
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 1 cut(s) 1538
MvnI CGCG 2 cut(s) 374, 1061
MwoI GCNNNNNNNGC 6 cut(s) 731, 1337, 1598, 1607, 1610, 1619
NaeI GCCGGC 1 cut(s) 13
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 6 cut(s) 400, 449, 462, 1043, 1253, 1407
NlaIV GGNNCC 3 cut(s) 246, 1211, 1318
NmuCI GTSAC 2 cut(s) 1042, 1062
NspI RCATGY 2 cut(s) 1043, 1407
OliI CACNNNNGTG 1 cut(s) 803
PciI ACATGT 1 cut(s) 1039
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 651
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 1081, 1427
PflMI CCANNNNNTGG 5 cut(s) 605, 760, 1194, 1205, 1220
PinAI ACCGGT 1 cut(s) 1016
PleI GAGTC 7 cut(s) 215, 307, 637, 764, 770, 1084, 1735
PpsI GAGTC 7 cut(s) 215, 307, 637, 764, 770, 1084, 1735
PscI ACATGT 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 1536
PspGI CCWGG 1 cut(s) 1536
PspN4I GGNNCC 3 cut(s) 246, 1211, 1318
PspPI GGNCC 3 cut(s) 348, 1283, 1734
PstI CTGCAG 3 cut(s) 532, 868, 1342
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 8 cut(s) 21, 30, 512, 688, 1209, 1316, 1533, 1647
PvuII CAGCTG 2 cut(s) 869, 1574
RsaI GTAC 1 cut(s) 1038
RsaNI GTAC 1 cut(s) 1037
RseI CAYNNNNRTG 3 cut(s) 803, 1402, 1440
SaqAI TTAA 9 cut(s) 474, 701, 833, 948, 960, 1001, 1013, 1374, 1464
Sau96I GGNCC 3 cut(s) 348, 1283, 1734
SchI GAGTC 7 cut(s) 215, 307, 638, 764, 770, 1084, 1736
ScrFI CCNGG 1 cut(s) 1538
SfaNI GCATC 7 cut(s) 24, 99, 481, 560, 754, 961, 1432
SfcI CTRYAG 4 cut(s) 528, 864, 987, 1338
SinI GGWCC 2 cut(s) 1283, 1734
SmiMI CAYNNNNRTG 3 cut(s) 803, 1402, 1440
SmlI CTYRAG 6 cut(s) 263, 657, 1025, 1076, 1085, 1094
SmoI CTYRAG 6 cut(s) 263, 657, 1025, 1076, 1085, 1094
SsiI CCGC 3 cut(s) 167, 479, 1610
SspI AATATT 1 cut(s) 1183
SspMI CTAG 3 cut(s) 416, 1310, 1526
StyD4I CCNGG 1 cut(s) 1536
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 6 cut(s) 333, 370, 431, 946, 1361, 1513
TaiI ACGT 4 cut(s) 135, 295, 547, 1115
TaqI TCGA 7 cut(s) 93, 147, 206, 381, 578, 939, 1244
TauI GCSGC 2 cut(s) 170, 1613
TfiI GAWTC 2 cut(s) 1081, 1427
Tru1I TTAA 9 cut(s) 474, 701, 833, 948, 960, 1001, 1013, 1374, 1464
Tru9I TTAA 9 cut(s) 474, 701, 833, 948, 960, 1001, 1013, 1374, 1464
TscAI CASTG 4 cut(s) 505, 910, 1352, 1585
TseFI GTSAC 2 cut(s) 1042, 1062
Tsp45I GTSAC 2 cut(s) 1042, 1062
TspDTI ATGAA 3 cut(s) 385, 509, 926
TspGWI ACGGA 1 cut(s) 1679
TspRI CASTG 4 cut(s) 505, 910, 1352, 1585
Van91I CCANNNNNTGG 5 cut(s) 605, 760, 1194, 1205, 1220
VpaK11BI GGWCC 2 cut(s) 1283, 1734
XapI RAATTY 1 cut(s) 1128
XbaI TCTAGA 1 cut(s) 1309
XceI RCATGY 2 cut(s) 1043, 1407
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 3 cut(s) 416, 1310, 1526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.