Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007805

Physical Location & Seq

Genomic Coordinates Forward (+)

38928278 .. 38930116

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0318600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGGCATTGTGAGGGTTGCCGTGCTGCCGGACCCAGAATCTGAGGCTCGATCTCGCTACCCTGTTTCGGGTGAGGCTGTGTCCAGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGAACAATGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGCTGAGGCCTGAGCCTGTTTCGGTTACTTGTCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGAGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGTTTACAATTGAAACCTCGATCCATTCCCCTATCTTCCCCTATCTTCTCACTCCCTCAAGCATAACCGTAATTCTCCCCGCGTCATCTCCACAGCTTCGATCATTTCACGTTTGCCTCGCCTACCTTTCAATTCGACACCGACATCAAATTTCAGGGGGTTTGGTTCGCCGTGAGCTTCCTCCGTTGTCTTCCGCAAACTCGACGCTGATGACTTCCGCTACCCTCTCGTTAAGCAGGTGTGAGCACATTGATTTTGAGAAGGATTCGAGGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004370 GO:0005975 GO:0006066 GO:0006071 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019400 GO:0019751 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0071704 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko03320 ko04626 map00561 map01100 map03320 map04626

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

244

Amino Acids

27.2

Weight (kDa)

6.66

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80460 AT1G80460
fragaria_vesca	FvH4_6g29330
malus_domestica	MD09G1222300.v1.1 MD17G1215600.v1.1
prunus_persica	Prupe.3G091800_v2.0.a1
pyrus_communis	pycom17g22010 pycom808g00550
rosa_chinensis	RchiOBHm_Chr2g0134571
rosa_laevigata	RLG00000019403 RLG00000019410
rosa_multiflora	Rmu_sc0002792.1_g000034 Rmu_sc0004670.1_g000014 Rmu_ssc0000438.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110000
rosa_rugosa	Rorug02G0318500 Rorug02G0318600 Rorug06G0124200
rosa_samantha	Rh2AG374800 Rh2BG376400 Rh2CG355000 Rh6AG233000 Rh6DG231400
rosa_wichuraiana	Rw2G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	681
AccII	CGCG	1 cut(s)	536
AciI	CCGC	4 cut(s)	257, 534, 648, 672
AclWI	GGATC	2 cut(s)	429, 469
AcsI	RAATTY	1 cut(s)	603
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	70, 71, 93
AgsI	TTSAA	2 cut(s)	467, 585
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	145, 550, 631
AluI	AGCT	3 cut(s)	145, 550, 631
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	429, 469
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	86, 152
AvaII	GGWCC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	702
BbvCI	CCTCAGC	2 cut(s)	176, 279
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	86, 131
BceAI	ACGGC	2 cut(s)	8, 609
BciT130I	CCWGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	681
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	29, 258
BlsI	GCNGC	2 cut(s)	30, 259
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	636
Bpu10I	CCTNAGC	3 cut(s)	176, 183, 279
BpuEI	CTTGAG	2 cut(s)	346, 496
BsaJI	CCNNGG	2 cut(s)	252, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 71, 93
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	252, 344
BseGI	GGATG	2 cut(s)	337, 360
BseLI	CCNNNNNNNGG	3 cut(s)	70, 71, 93
BseMII	CTCAG	4 cut(s)	36, 167, 174, 270
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	70, 71, 93
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	53, 421, 474, 554
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	4 cut(s)	257, 534, 648, 672
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	4 cut(s)	37, 168, 175, 271
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	429, 469
BssECI	CCNNGG	2 cut(s)	252, 344
BssMI	GATC	4 cut(s)	53, 421, 474, 554
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	7, 267
BstDEI	CTNAG	4 cut(s)	45, 176, 183, 279
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	337, 360
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	4 cut(s)	56, 424, 477, 557
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	4 cut(s)	53, 421, 474, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	337, 360
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	7, 267
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	34
CseI	GACGC	2 cut(s)	525, 667
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	345
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	45, 176, 183, 279
DpnI	GATC	4 cut(s)	55, 423, 476, 556
DpnII	GATC	4 cut(s)	53, 421, 474, 554
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	344
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	1 cut(s)	348
FaiI	YATR	5 cut(s)	111, 294, 346, 386, 518
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	344
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	29, 258
FokI	GGATG	2 cut(s)	344, 367
Fsp4HI	GCNGC	2 cut(s)	29, 258
GluI	GCNGC	2 cut(s)	29, 258
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	2 cut(s)	525, 667
Hin1II	CATG	1 cut(s)	348
HinfI	GANTC	6 cut(s)	41, 164, 230, 304, 430, 719
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	86, 152
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	459
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	2 cut(s)	335, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
HpyF3I	CTNAG	4 cut(s)	45, 176, 183, 279
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	53, 421, 474, 554
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	196, 408
MalI	GATC	4 cut(s)	55, 423, 476, 556
MboI	GATC	4 cut(s)	53, 421, 474, 554
MboII	GAAGA	4 cut(s)	239, 481, 491, 636
MfeI	CAATTG	2 cut(s)	336, 462
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	6 cut(s)	100, 336, 462, 525, 585, 603
MlyI	GAGTC	2 cut(s)	158, 239
MseI	TTAA	4 cut(s)	99, 213, 222, 686
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	253
MunI	CAATTG	2 cut(s)	336, 462
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	53, 421, 474, 554
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	41, 304, 430, 719
PkrI	GCNGC	2 cut(s)	30, 259
PleI	GAGTC	2 cut(s)	158, 238
PpsI	GAGTC	2 cut(s)	158, 238
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	99, 213, 222, 686
SatI	GCNGC	2 cut(s)	29, 258
Sau3AI	GATC	4 cut(s)	53, 421, 474, 554
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	2 cut(s)	158, 239
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	702
SetI	ASST	8 cut(s)	147, 288, 473, 552, 567, 582, 633, 695
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	325, 511
SmoI	CTYRAG	2 cut(s)	325, 511
Sse9I	AATT	6 cut(s)	100, 336, 462, 525, 585, 603
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	257, 534, 648, 672
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	8 cut(s)	52, 209, 233, 473, 553, 589, 656, 722
TasI	AATT	6 cut(s)	100, 336, 462, 525, 585, 603
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	4 cut(s)	41, 304, 430, 719
Tru1I	TTAA	4 cut(s)	99, 213, 222, 686
Tru9I	TTAA	4 cut(s)	99, 213, 222, 686
TseI	GCWGC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	603
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.