Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002792.1

Orthogroup ID

OG0007805

Physical Location & Seq

Genomic Coordinates Forward (+)

142232 .. 143623

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002792.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctgcagtttttccgtccaatccggactgttttggtaattttcgatcacttgtactcattttctgacttcgtgctagttataaatgtttctcaaaatgatgaaacgaagcggagcagcccggtcccaacaccattggaggtggtcggcggcggctctgcccctaactccggcgacctttttcgcccagttgtaaggccagctgacactgagacaacagctctcggagctgcttatgcggctggattagctgctggtgtttggactgaaaaggagatctttgcttctgaagacaagacgaggacttccaccaccttccgtccaaaaataggtgaagagttgaggaagaagaagttggagtcgtggtccaaagccgtttcaagaacttttgatttggccgatctttcgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004370 GO:0005975 GO:0006066 GO:0006071 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019400 GO:0019751 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0071704 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko03320 ko04626 map00561 map01100 map03320 map04626

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

6.82

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80460 AT1G80460
fragaria_vesca	FvH4_6g29330
malus_domestica	MD09G1222300.v1.1 MD17G1215600.v1.1
prunus_persica	Prupe.3G091800_v2.0.a1
pyrus_communis	pycom17g22010 pycom808g00550
rosa_chinensis	RchiOBHm_Chr2g0134571
rosa_laevigata	RLG00000019403 RLG00000019410
rosa_multiflora	Rmu_sc0002792.1_g000034 Rmu_sc0004670.1_g000014 Rmu_ssc0000438.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110000
rosa_rugosa	Rorug02G0318500 Rorug02G0318600 Rorug06G0124200
rosa_samantha	Rh2AG374800 Rh2BG376400 Rh2CG355000 Rh6AG233000 Rh6DG231400
rosa_wichuraiana	Rw2G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	4 cut(s)	109, 147, 150, 236
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	167, 326
AgsI	TTSAA	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	4 cut(s)	200, 218, 227, 248
AluI	AGCT	4 cut(s)	200, 218, 227, 248
Alw26I	GTCTC	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	2 cut(s)	194, 393
ApeKI	GCWGC	3 cut(s)	114, 227, 248
AspS9I	GGNCC	2 cut(s)	121, 363
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	121, 363
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	126, 214, 235
BceAI	ACGGC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	2
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	6 cut(s)	115, 148, 151, 228, 237, 249
BlsI	GCNGC	6 cut(s)	116, 149, 152, 229, 238, 250
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	121, 363
BmgT120I	GGNCC	2 cut(s)	121, 363
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 326
Bse1I	ACTGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	167, 326
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	126, 214, 235
BshFI	GGCC	2 cut(s)	196, 395
BsiSI	CCGG	3 cut(s)	22, 119, 168
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	167, 326
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	196, 395
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	43, 273, 397
BspACI	CCGC	4 cut(s)	109, 147, 150, 236
BspANI	GGCC	2 cut(s)	196, 395
BspCNI	CTCAG	1 cut(s)	199
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	3 cut(s)	43, 273, 397
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	46, 276, 400
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	43, 273, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 233, 236, 245
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	2
BstV1I	GCAGC	3 cut(s)	126, 214, 235
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	196, 395
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	121, 363
Csp6I	GTAC	1 cut(s)	52
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	3 cut(s)	45, 275, 399
DpnII	GATC	3 cut(s)	43, 273, 397
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	121, 363
Eco57I	CTGAAG	1 cut(s)	306
FaiI	YATR	2 cut(s)	80, 234
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	6 cut(s)	115, 148, 151, 228, 237, 249
Fsp4HI	GCNGC	6 cut(s)	115, 148, 151, 228, 237, 249
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	6 cut(s)	115, 148, 151, 228, 237, 249
HaeIII	GGCC	2 cut(s)	196, 395
HapII	CCGG	3 cut(s)	22, 119, 168
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	3 cut(s)	22, 119, 168
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	3 cut(s)	64, 224, 286
Hpy188III	TCNNGA	2 cut(s)	22, 378
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 233, 236, 245
HpyF3I	CTNAG	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	43, 273, 397
LmnI	GCTCC	2 cut(s)	111, 224
LpnPI	CCDG	7 cut(s)	35, 132, 181, 198, 210, 225, 237
Lsp1109I	GCAGC	3 cut(s)	126, 214, 235
MaeI	CTAG	1 cut(s)	74
MalI	GATC	3 cut(s)	45, 275, 399
MboI	GATC	3 cut(s)	43, 273, 397
MboII	GAAGA	4 cut(s)	299, 344, 355, 358
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	130, 291, 333
MroI	TCCGGA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	22, 119, 168
MspR9I	CCNGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	224, 233, 236, 245
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	43, 273, 397
NlaIV	GGNNCC	1 cut(s)	123
PkrI	GCNGC	6 cut(s)	116, 149, 152, 229, 238, 250
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	121, 363
PstI	CTGCAG	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SatI	GCNGC	6 cut(s)	115, 148, 151, 228, 237, 249
Sau3AI	GATC	3 cut(s)	43, 273, 397
Sau96I	GGNCC	2 cut(s)	121, 363
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	8 cut(s)	141, 177, 202, 220, 229, 250, 314, 331
SfcI	CTRYAG	1 cut(s)	2
SinI	GGWCC	2 cut(s)	121, 363
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	4 cut(s)	109, 147, 150, 236
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	3 cut(s)	150, 153, 239
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	3 cut(s)	114, 227, 248
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	121, 363
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.