Rmu_sc0004670.1_g000014

glycerol

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004670.1
Physical Location & Seq
Reverse (-)
66438 .. 68621
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004670.1_g000014.1.cds

Sequence Viewer

Length: 1224 bp
atgtctaagcaagcagaggaggaagtgtatattgggtcaattgaccaaggaaccaccagcaccagattcataatctatgatcatttggcgcgcccagttgggtctcaccaggtcgagttcactcaggtctacccggaagcaggatgggtggagcatgatccaatggagatattggagagcgtgagagtttgtatggctaaggctctggacaaggccaccgccgatgggcacaacgtcgacagtggattgaaggcgattgggttgaccaatcagagagaaaccactctcgtttggagtaaatccactggctgccctctttacaatgctattgtttggatggatgcccgtaccagttctgtttgcagaaaattggagaaagaattatctgggggcagaactcatttttcagagatatgtggtttgcccataagcacctatttcagtgctatgaagctgctatggttgatggagaatgtcgatactgttaaggaggctattaaatcaggggatgctctgtttggaactatagacacttggttaatctggaacttaaccggtggtctcaagggaggggtacatgtcacggatgtctccaacgcgtcacgcactatgctcatgaatcttaagactcttgagtgggatcaacccaccttggataccttgggaatttccgctacaattctccccaaaattgtcagcaactctgaggtcattggaaatattgccattggatggccaattactgggatcccaatttctggatgtttaggtgatcaacatgcagcaatgttaggtcaggcttgcaggaaaggtgaggccaagagcacttatggaactggtgcttttattcttctgaacactggtgaagagataactctgtcgaagcatgggcttctaagcactttgtcattcaaacttggacctaaagctcctgtaaattacgctctagaaggatccattgctattgctggagctgcagcggacatgatgggcagcccagttgtaaggccagctgatactgagacaacagctctcggagctgcttatgctgctggattagctgttggtgtttggactgaagaacagatctttgcttctgaagacaagacgaggacttccaccaccttccatccaaaaataggtgaagagttgaggaagaagaagttggagtcatggtgcaaagctgtttcaagaacttttgatttggccgatcttgcgctttga

Protein Analysis

407

Amino Acids

43.89

Weight (kDa)

5.56

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 732, 743, 758
AccI GTMKAC 2 cut(s) 129, 237
AccII CGCG 2 cut(s) 91, 599
AciI CCGC 3 cut(s) 219, 672, 980
AclWI GGATC 6 cut(s) 152, 648, 742, 755, 948, 961
AcoI YGGCCR 2 cut(s) 734, 1206
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 2 cut(s) 1098, 1119
AfaI GTAC 2 cut(s) 349, 576
AfiI CCNNNNNNNGG 6 cut(s) 140, 225, 732, 743, 758, 1139
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 2 cut(s) 577, 597
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 3 cut(s) 250, 913, 1191
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 1148, 1180
AluBI AGCT 8 cut(s) 454, 929, 974, 1013, 1031, 1040, 1061, 1184
AluI AGCT 8 cut(s) 454, 929, 974, 1013, 1031, 1040, 1061, 1184
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 4 cut(s) 108, 566, 595, 1016
AlwI GGATC 6 cut(s) 152, 648, 742, 755, 948, 961
AoxI GGCC 5 cut(s) 213, 734, 816, 1007, 1206
ApeKI GCWGC 8 cut(s) 309, 454, 782, 974, 977, 993, 1040, 1049
ApoI RAATTY 1 cut(s) 666
AscI GGCGCGCC 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 554
AspLEI GCGC 3 cut(s) 91, 93, 1219
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 5 cut(s) 98, 782, 824, 875, 1154
AvaII GGWCC 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 736
BamHI GGATCC 2 cut(s) 747, 953
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 827
BbvI GCAGC 8 cut(s) 296, 441, 794, 961, 989, 1005, 1027, 1036
BccI CCATC 7 cut(s) 138, 218, 331, 460, 726, 982, 1137
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 2 cut(s) 79, 772
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 4 cut(s) 108, 566, 595, 1016
BfaI CTAG 1 cut(s) 947
BfmI CTRYAG 2 cut(s) 525, 975
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 1 cut(s) 649
BglII AGATCT 1 cut(s) 1086
BisI GCNGC 8 cut(s) 310, 455, 783, 975, 978, 994, 1041, 1050
BlsI GCNGC 8 cut(s) 311, 456, 784, 976, 979, 995, 1042, 1051
Bme1390I CCNGG 2 cut(s) 110, 134
Bme18I GGWCC 1 cut(s) 920
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 3 cut(s) 52, 749, 955
BmrFI CCNGG 2 cut(s) 110, 134
BmrI ACTGGG 3 cut(s) 89, 753, 992
BmsI GCATC 2 cut(s) 331, 499
BmuI ACTGGG 3 cut(s) 89, 753, 992
BpiI GAAGAC 1 cut(s) 1107
BpmI CTGGAG 1 cut(s) 990
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 548, 653
BpuMI CCSGG 1 cut(s) 134
BsaI GGTCTC 2 cut(s) 108, 566
BsaJI CCNNGG 3 cut(s) 46, 651, 660
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 1160, 1190
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 225, 732, 743, 758, 1139
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 7 cut(s) 95, 310, 351, 748, 841, 865, 998
Bse3DI GCAATG 2 cut(s) 792, 957
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 46, 651, 660
BseGI GGATG 8 cut(s) 149, 342, 346, 514, 592, 737, 767, 1129
BseLI CCNNNNNNNGG 6 cut(s) 140, 225, 732, 743, 758, 1139
BseMI GCAATG 2 cut(s) 792, 957
BseMII CTCAG 3 cut(s) 137, 696, 1011
BseNI ACTGG 7 cut(s) 95, 310, 351, 748, 841, 865, 998
BsePI GCGCGC 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 8 cut(s) 296, 441, 794, 961, 989, 1005, 1027, 1036
Bsh1236I CGCG 2 cut(s) 91, 599
BshFI GGCC 5 cut(s) 215, 736, 818, 1009, 1208
BshTI ACCGGT 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 827
BsiSI CCGG 2 cut(s) 134, 555
BslI CCNNNNNNNGG 6 cut(s) 140, 225, 732, 743, 758, 1139
BsmAI GTCTC 4 cut(s) 108, 566, 595, 1016
BsnI GGCC 5 cut(s) 215, 736, 818, 1009, 1208
Bso31I GGTCTC 2 cut(s) 108, 566
Bsp1286I GDGCHC 2 cut(s) 231, 827
Bsp143I GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
BspACI CCGC 3 cut(s) 219, 672, 980
BspANI GGCC 5 cut(s) 215, 736, 818, 1009, 1208
BspCNI CTCAG 3 cut(s) 136, 697, 1012
BspFNI CGCG 2 cut(s) 91, 599
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 52, 749, 955
BspMAI CTGCAG 1 cut(s) 979
BspPI GGATC 6 cut(s) 152, 648, 742, 755, 948, 961
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 2 cut(s) 108, 566
BsrDI GCAATG 2 cut(s) 792, 957
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 7 cut(s) 95, 310, 351, 748, 841, 865, 998
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 3 cut(s) 46, 651, 660
BssHII GCGCGC 1 cut(s) 89
BssMI GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
BssT1I CCWWGG 3 cut(s) 46, 651, 660
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 242, 484
Bst6I CTCTTC 2 cut(s) 861, 1140
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 12, 91, 802, 1011
BstDEI CTNAG 6 cut(s) 6, 123, 198, 705, 896, 1020
BstF5I GGATG 8 cut(s) 149, 342, 346, 514, 592, 737, 767, 1129
BstFNI CGCG 2 cut(s) 91, 599
BstHHI GCGC 3 cut(s) 91, 93, 1219
BstKTI GATC 8 cut(s) 82, 160, 643, 750, 775, 956, 1089, 1213
BstMAI GTCTC 4 cut(s) 108, 566, 595, 1016
BstMBI GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
BstMWI GCNNNNNNNGC 6 cut(s) 974, 1037, 1046, 1049, 1058, 1214
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 581, 782
BstSCI CCNGG 2 cut(s) 108, 132
BstSFI CTRYAG 2 cut(s) 525, 975
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 2 cut(s) 91, 599
BstV1I GCAGC 8 cut(s) 296, 441, 794, 961, 989, 1005, 1027, 1036
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 3 cut(s) 747, 953, 1086
BstYI RGATCY 3 cut(s) 747, 953, 1086
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 5 cut(s) 215, 736, 818, 1009, 1208
BtsCI GGATG 8 cut(s) 149, 342, 346, 514, 592, 737, 767, 1129
BtsIMutI CAGTG 4 cut(s) 247, 303, 448, 858
Cac8I GCNNGC 4 cut(s) 12, 91, 802, 1011
CciI TCATGA 1 cut(s) 615
CfoI GCGC 3 cut(s) 91, 93, 1219
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 1 cut(s) 920
CseI GACGC 1 cut(s) 588
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 2 cut(s) 348, 575
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 7 cut(s) 155, 578, 616, 779, 887, 985, 1173
CviQI GTAC 2 cut(s) 348, 575
DdeI CTNAG 6 cut(s) 6, 123, 198, 705, 896, 1020
DpnI GATC 8 cut(s) 81, 159, 642, 749, 774, 955, 1088, 1212
DpnII GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
EaeI YGGCCR 2 cut(s) 734, 1206
Eam1104I CTCTTC 2 cut(s) 861, 1140
EarI CTCTTC 2 cut(s) 861, 1140
Eco130I CCWWGG 3 cut(s) 46, 651, 660
Eco31I GGTCTC 2 cut(s) 108, 566
Eco47I GGWCC 1 cut(s) 920
Eco57I CTGAAG 2 cut(s) 1098, 1119
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 3 cut(s) 46, 651, 660
ErhI CCWWGG 3 cut(s) 46, 651, 660
FaeI CATG 7 cut(s) 158, 581, 619, 782, 890, 988, 1176
FatI CATG 7 cut(s) 154, 577, 615, 778, 886, 984, 1172
FbaI TGATCA 2 cut(s) 79, 772
FblI GTMKAC 2 cut(s) 129, 237
Fnu4HI GCNGC 8 cut(s) 310, 455, 783, 975, 978, 994, 1041, 1050
FokI GGATG 8 cut(s) 156, 349, 353, 521, 599, 744, 774, 1116
Fsp4HI GCNGC 8 cut(s) 310, 455, 783, 975, 978, 994, 1041, 1050
FspBI CTAG 1 cut(s) 947
GlaI GCGC 3 cut(s) 90, 92, 1218
GluI GCNGC 8 cut(s) 310, 455, 783, 975, 978, 994, 1041, 1050
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 5 cut(s) 215, 736, 818, 1009, 1208
HapII CCGG 2 cut(s) 134, 555
HgaI GACGC 1 cut(s) 588
HhaI GCGC 3 cut(s) 91, 93, 1219
Hin1II CATG 7 cut(s) 158, 581, 619, 782, 890, 988, 1176
Hin6I GCGC 3 cut(s) 89, 91, 1217
HinP1I GCGC 3 cut(s) 89, 91, 1217
HincII GTYRAC 2 cut(s) 238, 264
HindII GTYRAC 2 cut(s) 238, 264
HinfI GANTC 4 cut(s) 66, 619, 628, 1169
HpaII CCGG 2 cut(s) 134, 555
HphI GGTGA 5 cut(s) 98, 782, 824, 875, 1154
Hpy166II GTNNAC 4 cut(s) 120, 130, 238, 264
Hpy188I TCNGA 6 cut(s) 273, 409, 706, 855, 1037, 1099
Hpy188III TCNNGA 7 cut(s) 206, 544, 616, 632, 759, 947, 1191
Hpy8I GTNNAC 4 cut(s) 120, 130, 238, 264
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 244, 944, 1135
HpyCH4III ACNGT 2 cut(s) 242, 484
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 5 cut(s) 363, 782, 804, 977, 1179
HpyF10VI GCNNNNNNNGC 6 cut(s) 974, 1037, 1046, 1049, 1058, 1214
HpyF3I CTNAG 6 cut(s) 6, 123, 198, 705, 896, 1020
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 7 cut(s) 158, 581, 619, 782, 890, 988, 1176
HspAI GCGC 3 cut(s) 89, 91, 1217
Ksp22I TGATCA 2 cut(s) 79, 772
Kzo9I GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
LmnI GCTCC 4 cut(s) 151, 934, 971, 1037
Lsp1109I GCAGC 8 cut(s) 296, 441, 794, 961, 989, 1005, 1027, 1036
LweI GCATC 2 cut(s) 331, 499
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 1 cut(s) 947
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 580, 600
MalI GATC 8 cut(s) 81, 159, 642, 749, 774, 955, 1088, 1212
MboI GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
MboII GAAGA 7 cut(s) 842, 878, 1091, 1112, 1157, 1168, 1171
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 3 cut(s) 747, 953, 1086
MhlI GDGCHC 2 cut(s) 231, 827
MlsI TGGCCA 1 cut(s) 736
MluCI AATT 9 cut(s) 39, 368, 380, 666, 678, 690, 738, 753, 937
MluI ACGCGT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 736
MlyI GAGTC 2 cut(s) 622, 1178
MmeI TCCRAC 2 cut(s) 618, 1146
MnlI CCTC 9 cut(s) 10, 13, 324, 484, 563, 700, 808, 1104, 1146
Mox20I TGGCCA 1 cut(s) 736
MscI TGGCCA 1 cut(s) 736
MseI TTAA 5 cut(s) 486, 498, 539, 551, 624
Msp20I TGGCCA 1 cut(s) 736
MspA1I CMGCKG 2 cut(s) 980, 1013
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 2 cut(s) 134, 555
MspR9I CCNGG 2 cut(s) 110, 134
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 91, 599
MwoI GCNNNNNNNGC 6 cut(s) 974, 1037, 1046, 1049, 1058, 1214
NciI CCSGG 1 cut(s) 134
NdeII GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
NlaIII CATG 7 cut(s) 158, 581, 619, 782, 890, 988, 1176
NlaIV GGNNCC 3 cut(s) 52, 749, 955
NmuCI GTSAC 2 cut(s) 580, 600
NspI RCATGY 2 cut(s) 581, 782
PagI TCATGA 1 cut(s) 615
PalAI GGCGCGCC 1 cut(s) 89
PauI GCGCGC 1 cut(s) 89
PciI ACATGT 1 cut(s) 577
PfeI GAWTC 2 cut(s) 66, 619
PflMI CCANNNNNTGG 3 cut(s) 732, 743, 758
PinAI ACCGGT 1 cut(s) 554
PkrI GCNGC 8 cut(s) 311, 456, 784, 976, 979, 995, 1042, 1051
PleI GAGTC 2 cut(s) 622, 1177
PpsI GAGTC 2 cut(s) 622, 1177
PscI ACATGT 1 cut(s) 577
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 52, 749, 955
PspPI GGNCC 1 cut(s) 920
PstI CTGCAG 1 cut(s) 979
PsuI RGATCY 3 cut(s) 747, 953, 1086
PteI GCGCGC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 1013
RsaI GTAC 2 cut(s) 349, 576
RsaNI GTAC 2 cut(s) 348, 575
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 5 cut(s) 486, 498, 539, 551, 624
SatI GCNGC 8 cut(s) 310, 455, 783, 975, 978, 994, 1041, 1050
Sau3AI GATC 8 cut(s) 79, 157, 640, 747, 772, 953, 1086, 1210
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 2 cut(s) 622, 1178
ScrFI CCNGG 2 cut(s) 110, 134
SduI GDGCHC 2 cut(s) 231, 827
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 331, 499
SfcI CTRYAG 2 cut(s) 525, 975
SgsI GGCGCGCC 1 cut(s) 89
SinI GGWCC 1 cut(s) 920
SmlI CTYRAG 3 cut(s) 563, 623, 632
SmoI CTYRAG 3 cut(s) 563, 623, 632
Sse9I AATT 9 cut(s) 39, 368, 380, 666, 678, 690, 738, 753, 937
SsiI CCGC 3 cut(s) 219, 672, 980
SspI AATATT 1 cut(s) 721
SspMI CTAG 1 cut(s) 947
StyD4I CCNGG 2 cut(s) 108, 132
StyI CCWWGG 3 cut(s) 46, 651, 660
TaaI ACNGT 2 cut(s) 242, 484
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 114, 237, 477, 881
TasI AATT 9 cut(s) 39, 368, 380, 666, 678, 690, 738, 753, 937
TfiI GAWTC 2 cut(s) 66, 619
Tru1I TTAA 5 cut(s) 486, 498, 539, 551, 624
Tru9I TTAA 5 cut(s) 486, 498, 539, 551, 624
TscAI CASTG 4 cut(s) 247, 310, 448, 865
TseFI GTSAC 2 cut(s) 580, 600
TseI GCWGC 8 cut(s) 309, 454, 782, 974, 977, 993, 1040, 1049
Tsp45I GTSAC 2 cut(s) 580, 600
TspDTI ATGAA 3 cut(s) 58, 464, 632
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 4 cut(s) 247, 310, 448, 865
Van91I CCANNNNNTGG 3 cut(s) 732, 743, 758
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 1 cut(s) 666
XbaI TCTAGA 1 cut(s) 946
XceI RCATGY 2 cut(s) 581, 782
XmiI GTMKAC 2 cut(s) 129, 237
XspI CTAG 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.