FvH4_6g30890

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005617
Physical Location & Seq
Forward (+)
24073053 .. 24078250
5198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30890.t4

Sequence Viewer

Length: 1257 bp
ATGGATGTTCCCTCTCCAGAACCACATAGCGACTCTCACAGTGACCAATATCCTTTGCTACTAGAGCAGATGGAAAGCCCCAACAGTCATGTGCACATAATTGACGTAACAAGGAATGATGATACCTCATCAAGTTCATCTAACGATGATCAACCTCCTAGAGTGGAGTTGCCTCAGCATGAAGATAGACTGTCACATATTACACATGCCCCCACTTATCAGGCTGCTTCTTCAAACAGATTAACTTCTAGGAGTTCATCGTTTATGAGGCGAGGTGATGTATATAGTCGCCACAGAAGAAGCCCATTGAATTCAGGGTTATGGATTTCTGTTGAGCTTCTTGTCACTGTCAGTCAGATTATAGCATCTATTGTTGTTTTGTCATTGTCGACAAATGAAAATCCGCAAGCCCCTTTGTTTGCCTGGATTGTGGGCTATGCATCTGGCTGTGTTGCAACACTACCTATTCTTTACTGGAGGTTCCGTAACCGCTACAGGGGTGCTGAGCTAGAATCCACTCAATCGCATCAAGGCTCTGCTCAACGCAATCCTCCTGAACCAATGTCTTATACAGCTATATCAATTGCTCCAGCTTCACATGAGGAAACCAATCAAACTTCAGAGACAGTGGTGAGAGACCCTCAAGTTGCAGGACCCTTAAGTGCAAGACTTCATGGGTTGGTGGATCATTTCAAGATGGCATTAGATTGCTTCTTCGCAGTTTGGTTTGTTGTGGGAAATGTGTGGATTTTTGGAGGTCACTCTTCTCCCTCTGATGCCCCTAAATTGTATAGGTTATGCATAGTGTTCCTCACCTTTAGCTGCATTGGATATGCCATGCCATTCATACTGTGTGCAACAATTTGTTGCTGCCTGCCTTGCATCATTTCTGTCCTGGGATTCCGAGAGGACCATTCTCAGACTAGAGGAGCCACCACAGAGTCAATTAATTCTCTGCCAACCTACAAATTCAAGCTAAAGAGAAATGAGATCAATGATGATCTGGACAGCAACACCACTGCTGAAGGAGGACTCTTGGCTGCAGGGACAGAAAAGGAGCGTGCAATATTAGAAGAAGACGCGGTTTGTAGTATTTGCCTGGCAAATTATTCGGACAATGATGAGCTACGAGAGTTGACATGTTTACATGTCTTTCATGTGGAGTGTGTTGACAAATGGTTGAAAATCAATGCCTCATGTCCCCTCTGTAAGTCGGAGGTTGGAACCTTGCCAGGCAGAGACTCCAGCCAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

419

Amino Acids

46.34

Weight (kDa)

5.49

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 361 - 404 1.3e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 363 - 404 1.4e-13 Ring finger domain
zf-RING_11 PF17123 363 - 390 6.9e-08 RING-like zinc finger
zf-C3HC4 PF00097 363 - 403 4.9e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 363 - 403 2.7e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 389
AccII CGCG 1 cut(s) 1082
AciI CCGC 3 cut(s) 404, 490, 1082
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 2 cut(s) 310, 968
AcuI CTGAAG 2 cut(s) 603, 1044
AfiI CCNNNNNNNGG 1 cut(s) 496
AflII CTTAAG 1 cut(s) 658
AflIII ACRYGT 2 cut(s) 1139, 1147
AgsI TTSAA 5 cut(s) 234, 310, 694, 973, 1183
AjnI CCWGG 4 cut(s) 422, 894, 1098, 1231
AluBI AGCT 7 cut(s) 337, 508, 575, 593, 822, 976, 1126
AluI AGCT 7 cut(s) 337, 508, 575, 593, 822, 976, 1126
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 617, 630, 1233
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 693
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 224, 822, 870, 1040
ApoI RAATTY 2 cut(s) 310, 968
AseI ATTAAT 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 653, 910
AsuHPI GGTGA 3 cut(s) 287, 643, 805
AvaII GGWCC 2 cut(s) 653, 910
BaeGI GKGCMC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 1083
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 211, 809, 857, 1027
BccI CCATC 2 cut(s) 64, 691
BcgI CGANNNNNNTGC 2 cut(s) 1092, 1126
BciT130I CCWGG 4 cut(s) 424, 896, 1100, 1233
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 617, 630, 1233
BfaI CTAG 5 cut(s) 62, 159, 249, 509, 924
BfmI CTRYAG 2 cut(s) 493, 1041
BfrI CTTAAG 1 cut(s) 658
BisI GCNGC 4 cut(s) 225, 823, 871, 1041
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 4 cut(s) 226, 824, 872, 1042
Bme1390I CCNGG 4 cut(s) 424, 896, 1100, 1233
Bme18I GGWCC 2 cut(s) 653, 910
BmgT120I GGNCC 2 cut(s) 653, 910
BmiI GGNNCC 4 cut(s) 482, 655, 931, 1225
BmrFI CCNGG 4 cut(s) 424, 896, 1100, 1233
BmsI GCATC 5 cut(s) 374, 449, 535, 766, 891
BpiI GAAGAC 1 cut(s) 1083
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpmI CTGGAG 3 cut(s) 496, 573, 1228
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 479
BseBI CCWGG 4 cut(s) 424, 896, 1100, 1233
BseDI CCNNGG 1 cut(s) 895
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 188, 495, 932
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 942
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 4 cut(s) 211, 809, 857, 1027
Bsh1236I CGCG 1 cut(s) 1082
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 2 cut(s) 1060, 1185
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 617, 630, 1233
BsmFI GGGAC 2 cut(s) 1060, 1185
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 148, 685, 990, 1000
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 3 cut(s) 404, 490, 1082
BspCNI CTCAG 3 cut(s) 187, 496, 931
BspFNI CGCG 1 cut(s) 1082
BspLI GGNNCC 4 cut(s) 482, 655, 931, 1225
BspMAI CTGCAG 1 cut(s) 1045
BspPI GGATC 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 630
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 1 cut(s) 895
BssMI GATC 4 cut(s) 148, 685, 990, 1000
Bst2UI CCWGG 4 cut(s) 424, 896, 1100, 1233
Bst4CI ACNGT 6 cut(s) 41, 86, 192, 349, 628, 852
Bst6I CTCTTC 1 cut(s) 769
BstAFI CTTAAG 1 cut(s) 658
BstC8I GCNNGC 4 cut(s) 408, 875, 1062, 1250
BstDEI CTNAG 3 cut(s) 174, 504, 918
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 1082
BstKTI GATC 4 cut(s) 151, 688, 993, 1003
BstMAI GTCTC 3 cut(s) 617, 630, 1233
BstMBI GATC 4 cut(s) 148, 685, 990, 1000
BstMWI GCNNNNNNNGC 2 cut(s) 64, 879
BstNI CCWGG 4 cut(s) 424, 896, 1100, 1233
BstNSI RCATGY 3 cut(s) 209, 1143, 1151
BstSCI CCNGG 4 cut(s) 422, 894, 1098, 1231
BstSFI CTRYAG 2 cut(s) 493, 1041
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 1082
BstV1I GCAGC 4 cut(s) 211, 809, 857, 1027
BstV2I GAAGAC 1 cut(s) 1083
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 4 cut(s) 46, 345, 633, 1017
Cac8I GCNNGC 4 cut(s) 408, 875, 1062, 1250
Cfr13I GGNCC 2 cut(s) 653, 910
CseI GACGC 1 cut(s) 1088
DdeI CTNAG 3 cut(s) 174, 504, 918
DpnI GATC 4 cut(s) 150, 687, 992, 1002
DpnII GATC 4 cut(s) 148, 685, 990, 1000
Eam1104I CTCTTC 1 cut(s) 769
EarI CTCTTC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 2 cut(s) 653, 910
Eco57I CTGAAG 2 cut(s) 603, 1044
EcoO109I RGGNCCY 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 4 cut(s) 422, 894, 1098, 1231
EcoT22I ATGCAT 2 cut(s) 442, 803
FaqI GGGAC 2 cut(s) 1060, 1185
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 4 cut(s) 225, 823, 871, 1041
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 225, 823, 871, 1041
FspBI CTAG 5 cut(s) 62, 159, 249, 509, 924
GluI GCNGC 4 cut(s) 225, 823, 871, 1041
GsuI CTGGAG 3 cut(s) 496, 573, 1228
HgaI GACGC 1 cut(s) 1088
HincII GTYRAC 3 cut(s) 390, 1137, 1171
HindII GTYRAC 3 cut(s) 390, 1137, 1171
HinfI GANTC 6 cut(s) 32, 512, 900, 941, 1032, 1241
HphI GGTGA 3 cut(s) 287, 643, 805
Hpy166II GTNNAC 5 cut(s) 94, 390, 1137, 1145, 1171
Hpy188I TCNGA 7 cut(s) 357, 622, 775, 905, 921, 1114, 1216
Hpy188III TCNNGA 4 cut(s) 17, 554, 694, 1004
Hpy8I GTNNAC 5 cut(s) 94, 390, 1137, 1145, 1171
HpyAV CCTTC 1 cut(s) 1019
HpyCH4III ACNGT 6 cut(s) 41, 86, 192, 349, 628, 852
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 879
HpyF3I CTNAG 3 cut(s) 174, 504, 918
HpySE526I ACGT 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 4 cut(s) 148, 685, 990, 1000
LmnI GCTCC 3 cut(s) 592, 929, 1057
Lsp1109I GCAGC 4 cut(s) 211, 809, 857, 1027
LweI GCATC 5 cut(s) 374, 449, 535, 766, 891
MaeI CTAG 5 cut(s) 62, 159, 249, 509, 924
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 6 cut(s) 41, 106, 192, 343, 485, 758
MalI GATC 4 cut(s) 150, 687, 992, 1002
MboI GATC 4 cut(s) 148, 685, 990, 1000
MboII GAAGA 7 cut(s) 194, 222, 309, 706, 756, 1085, 1088
MfeI CAATTG 1 cut(s) 582
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 9 cut(s) 99, 310, 582, 785, 861, 945, 949, 968, 1105
MlyI GAGTC 4 cut(s) 26, 950, 1026, 1235
MmeI TCCRAC 2 cut(s) 1194, 1201
Mph1103I ATGCAT 2 cut(s) 442, 803
MseI TTAA 3 cut(s) 242, 659, 948
MspCI CTTAAG 1 cut(s) 658
MspR9I CCNGG 4 cut(s) 424, 896, 1100, 1233
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 4 cut(s) 424, 896, 1100, 1233
MvnI CGCG 1 cut(s) 1082
MwoI GCNNNNNNNGC 2 cut(s) 64, 879
NdeII GATC 4 cut(s) 148, 685, 990, 1000
NlaIV GGNNCC 4 cut(s) 482, 655, 931, 1225
NmuCI GTSAC 4 cut(s) 41, 192, 343, 758
NsiI ATGCAT 2 cut(s) 442, 803
NspI RCATGY 3 cut(s) 209, 1143, 1151
PciI ACATGT 2 cut(s) 1139, 1147
PfeI GAWTC 2 cut(s) 512, 900
PkrI GCNGC 4 cut(s) 226, 824, 872, 1042
PleI GAGTC 4 cut(s) 26, 949, 1026, 1235
PpsI GAGTC 4 cut(s) 26, 949, 1026, 1235
PpuMI RGGWCCY 1 cut(s) 653
PscI ACATGT 2 cut(s) 1139, 1147
PshBI ATTAAT 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 4 cut(s) 422, 894, 1098, 1231
PspGI CCWGG 4 cut(s) 422, 894, 1098, 1231
PspN4I GGNNCC 4 cut(s) 482, 655, 931, 1225
PspPI GGNCC 2 cut(s) 653, 910
PspPPI RGGWCCY 1 cut(s) 653
PstI CTGCAG 1 cut(s) 1045
SalI GTCGAC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 242, 659, 948
SatI GCNGC 4 cut(s) 225, 823, 871, 1041
Sau3AI GATC 4 cut(s) 148, 685, 990, 1000
Sau96I GGNCC 2 cut(s) 653, 910
SchI GAGTC 4 cut(s) 26, 950, 1026, 1235
ScrFI CCNGG 4 cut(s) 424, 896, 1100, 1233
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 5 cut(s) 374, 449, 535, 766, 891
SfcI CTRYAG 2 cut(s) 493, 1041
SinI GGWCC 2 cut(s) 653, 910
SmlI CTYRAG 2 cut(s) 642, 658
SmoI CTYRAG 2 cut(s) 642, 658
Sse9I AATT 9 cut(s) 99, 310, 582, 785, 861, 945, 949, 968, 1105
SsiI CCGC 3 cut(s) 404, 490, 1082
SspI AATATT 1 cut(s) 1068
SspMI CTAG 5 cut(s) 62, 159, 249, 509, 924
StyD4I CCNGG 4 cut(s) 422, 894, 1098, 1231
TaaI ACNGT 6 cut(s) 41, 86, 192, 349, 628, 852
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 389
TasI AATT 9 cut(s) 99, 310, 582, 785, 861, 945, 949, 968, 1105
TfiI GAWTC 2 cut(s) 512, 900
Tru1I TTAA 3 cut(s) 242, 659, 948
Tru9I TTAA 3 cut(s) 242, 659, 948
TscAI CASTG 4 cut(s) 46, 352, 633, 1024
TseFI GTSAC 4 cut(s) 41, 192, 343, 758
TseI GCWGC 4 cut(s) 224, 822, 870, 1040
Tsp45I GTSAC 4 cut(s) 41, 192, 343, 758
TspDTI ATGAA 7 cut(s) 126, 195, 246, 411, 662, 835, 1145
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 4 cut(s) 46, 352, 633, 1024
Vha464I CTTAAG 1 cut(s) 658
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 653, 910
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 2 cut(s) 310, 968
XceI RCATGY 3 cut(s) 209, 1143, 1151
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 5 cut(s) 62, 159, 249, 509, 924
Zsp2I ATGCAT 2 cut(s) 442, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.