Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11858065 .. 11860927

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGATGTTCCCTCTGCAGCACCAAATAGTGACACCCAAGGTGACCAATTTCCTTTGCTACTAGAGCAGATGGAAAGTCATAACAATCGTGTGCACGTAATTGATGTAACAAGGAATGATGATGCTTCATCAAGTACATCTAGTGATGACCAGCGTCCTAGAGTGGACATGCCCCAGCATGAAGACAGACCATCAGCGAGTACACATGCCCCAACTTATCTAGGTGAATCATTTTCATCAAACAGATTAAATTCTAGGAATTCCTCATTTGTGAGGAGAGGTGATGGGTATAGTCGTCACCGAAGAAGCCCCTTAAATTCAGGGTTATGGATTTCTGTTGAGCTTCTTGTCACAATGAGTCAGATTATAGCATCTATTGTTGTTTTGTCACTGTCAACAAACGAAGATCGACAAGCCCCTTTGTTTGCATGGGTTGTGGGTTATGCATCAGGTTGTGTTGCAACACTTCCTGTTCTTTACTGGAGGTTCCGTAACCGCAACAGGGCTGCTGAGCAAGAATCCATTGAATCGCATCAAGGGTCTTCTGTAAGCAGTGCTGAACCAACGTCTTATACAGCTATTTCAATTACTCAAGCTTCAGATGAAGAGCACAATCGCACCTCCGAAACGGTTACAACTAACCCTCAAATTGGAGGACCCTTAAGTGCAAGATGGTGTCGTGAAGTGAGGAAGCTCATTCAATTTTGCAGAATCAATGGGTTAGTGGATCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTCTGGTTTGTTGTAGGCAATGTGTGGATTTTTGGAAGTCACTCTTCTCCTTCTGATGCTCCTAAACTGTACAAGTTATGCATAGTGTTCCTTACCTTCAGCTGTATTGGATATGCAATGCCATTCATACTGTGTGCAACAATTTGCTGCTGCCTACCTTGCATCATTTCTGTCCTCGGATTTCGAGAGGATCTTTCTCAGACTAGAGGAGCCACCGTGGAATCAATTAATGCTCTCCCAACGTACAAATTCAAGTTGAAGGAAAATGAGAGCAATGATGATCAGGAGGGCAACCTAGGTAGTGAATGTGGGCTCTTGGCTGCAGGGACAGAAAAGGAGCGTGAGATATCTGGAGAAGATGCGGTTTGTTGTATTTGCTTGGCAAAGTATGCAGATAACGACGAGCTACGGGAGCTACCATGTTTACATGTCTTTCACGTGGAGTGTGTTGACAAATGGTTGAAAATCAATGCATCGTGTCCCCTCTGCAAAGGTGAGGTCGGAGAGAGCAGCGGTGAGGCCAGGGACTCCAGCCAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

435

Amino Acids

48.02

Weight (kDa)

5.24

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80400
fragaria_vesca	FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890
malus_domestica	MD09G1215300.v1.1 MD17G1198000.v1.1
prunus_persica	Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1
pyrus_communis	pycom09g13210 pycom17g20290
rosa_chinensis	RchiOBHm_Chr2g0137381
rosa_laevigata	RLG00000019655
rosa_multiflora	Rmu_ssc0000312.1_g000015
rosa_roxburghii	Rroxscaffold_2G00107090
rosa_rugosa	Rorug02G0342000 Rorug02G0342100
rosa_samantha	Rh2AG390200 Rh2BG397600 Rh2CG377500 Rh2DG412900
rosa_wichuraiana	Rw2G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	496, 1124, 1275
AclWI	GGATC	2 cut(s)	735, 960
AcsI	RAATTY	4 cut(s)	250, 259, 316, 1010
AcuI	CTGAAG	2 cut(s)	582, 844
AcvI	CACGTG	1 cut(s)	1201
AfaI	GTAC	4 cut(s)	136, 202, 833, 1007
AfiI	CCNNNNNNNGG	2 cut(s)	502, 650
AflII	CTTAAG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	1189
AgsI	TTSAA	7 cut(s)	527, 585, 701, 736, 1015, 1021, 1225
AjnI	CCWGG	1 cut(s)	1283
AluBI	AGCT	7 cut(s)	343, 578, 596, 694, 864, 1168, 1177
AluI	AGCT	7 cut(s)	343, 578, 596, 694, 864, 1168, 1177
Alw21I	GWGCWC	2 cut(s)	96, 612
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	735, 960
AoxI	GGCC	2 cut(s)	741, 1281
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	6 cut(s)	17, 506, 909, 912, 1082, 1272
ApoI	RAATTY	4 cut(s)	250, 259, 316, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	1245, 1277
AseI	ATTAAT	1 cut(s)	990
AspA2I	CCTAGG	1 cut(s)	1057
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	6 cut(s)	53, 236, 290, 293, 1268, 1289
AvaII	GGWCC	1 cut(s)	656
AvrII	CCTAGG	1 cut(s)	1057
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	1077
BbrPI	CACGTG	1 cut(s)	1201
BbsI	GAAGAC	2 cut(s)	189, 534
Bbv12I	GWGCWC	2 cut(s)	96, 612
BbvI	GCAGC	6 cut(s)	29, 493, 896, 899, 1069, 1284
BccI	CCATC	5 cut(s)	64, 199, 278, 666, 733
BciT130I	CCWGG	1 cut(s)	1285
BclI	TGATCA	1 cut(s)	1042
BfaI	CTAG	7 cut(s)	62, 141, 159, 221, 255, 966, 1058
BfmI	CTRYAG	2 cut(s)	15, 1083
BfrI	CTTAAG	1 cut(s)	661
BisI	GCNGC	6 cut(s)	18, 507, 910, 913, 1083, 1273
BlnI	CCTAGG	1 cut(s)	1057
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	6 cut(s)	19, 508, 911, 914, 1084, 1274
Bme1390I	CCNGG	1 cut(s)	1285
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	3 cut(s)	488, 658, 973
BmrFI	CCNGG	1 cut(s)	1285
BmsI	GCATC	8 cut(s)	112, 380, 455, 541, 808, 933, 1111, 1244
BoxI	GACNNNNGTC	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	189, 534
BpmI	CTGGAG	3 cut(s)	502, 1134, 1276
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	576
BsaAI	YACGTR	2 cut(s)	97, 1201
BsaJI	CCNNGG	5 cut(s)	37, 937, 978, 1057, 1284
BsaXI	ACNNNNNCTCC	4 cut(s)	475, 505, 963, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 650
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	3 cut(s)	787, 885, 1042
BseBI	CCWGG	1 cut(s)	1285
BseDI	CCNNGG	5 cut(s)	37, 937, 978, 1057, 1284
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	502, 650
BseMI	GCAATG	3 cut(s)	787, 885, 1042
BseMII	CTCAG	2 cut(s)	501, 974
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	2 cut(s)	289, 984
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	29, 493, 896, 899, 1069, 1284
BseYI	CCCAGC	1 cut(s)	174
BshFI	GGCC	2 cut(s)	743, 1283
BsiHKAI	GWGCWC	2 cut(s)	96, 612
BslFI	GGGAC	3 cut(s)	1102, 1227, 1301
BslI	CCNNNNNNNGG	2 cut(s)	502, 650
BsmFI	GGGAC	3 cut(s)	1102, 1227, 1301
BsnI	GGCC	2 cut(s)	743, 1283
Bsp1286I	GDGCHC	3 cut(s)	96, 612, 1077
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	4 cut(s)	406, 727, 952, 1042
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	3 cut(s)	496, 1124, 1275
BspANI	GGCC	2 cut(s)	743, 1283
BspCNI	CTCAG	2 cut(s)	502, 973
BspLI	GGNNCC	3 cut(s)	488, 658, 973
BspMAI	CTGCAG	2 cut(s)	19, 1087
BspPI	GGATC	2 cut(s)	735, 960
BspQI	GCTCTTC	1 cut(s)	600
BspTI	CTTAAG	1 cut(s)	661
BsrDI	GCAATG	3 cut(s)	787, 885, 1042
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	5 cut(s)	37, 937, 978, 1057, 1284
BssMI	GATC	4 cut(s)	406, 727, 952, 1042
BssT1I	CCWWGG	2 cut(s)	37, 1057
Bst2UI	CCWGG	1 cut(s)	1285
Bst4CI	ACNGT	5 cut(s)	393, 631, 831, 894, 979
Bst6I	CTCTTC	2 cut(s)	600, 811
BstAFI	CTTAAG	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstAUI	TGTACA	1 cut(s)	831
BstBAI	YACGTR	2 cut(s)	97, 1201
BstDEI	CTNAG	3 cut(s)	510, 745, 960
BstDSI	CCRYGG	1 cut(s)	978
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	409, 730, 955, 1045
BstMBI	GATC	4 cut(s)	406, 727, 952, 1042
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 921, 1151, 1174
BstNI	CCWGG	1 cut(s)	1285
BstNSI	RCATGY	3 cut(s)	172, 209, 1193
BstPAI	GACNNNNGTC	1 cut(s)	153
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	1283
BstSFI	CTRYAG	2 cut(s)	15, 1083
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	6 cut(s)	29, 493, 896, 899, 1069, 1284
BstV2I	GAAGAC	2 cut(s)	189, 534
BstX2I	RGATCY	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	743, 1283
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	389, 559
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	4 cut(s)	135, 201, 832, 1006
CviAII	CATG	6 cut(s)	169, 179, 206, 429, 1182, 1190
CviQI	GTAC	4 cut(s)	135, 201, 832, 1006
DdeI	CTNAG	3 cut(s)	510, 745, 960
DpnI	GATC	4 cut(s)	408, 729, 954, 1044
DpnII	GATC	4 cut(s)	406, 727, 952, 1042
Eam1104I	CTCTTC	2 cut(s)	600, 811
EarI	CTCTTC	2 cut(s)	600, 811
Eco130I	CCWWGG	2 cut(s)	37, 1057
Eco24I	GRGCYC	1 cut(s)	1077
Eco32I	GATATC	1 cut(s)	1110
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	582, 844
Eco72I	CACGTG	1 cut(s)	1201
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	1283
EcoRV	GATATC	1 cut(s)	1110
EcoT14I	CCWWGG	2 cut(s)	37, 1057
EcoT22I	ATGCAT	3 cut(s)	448, 845, 1237
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	2 cut(s)	37, 1057
FaeI	CATG	6 cut(s)	172, 182, 209, 432, 1185, 1193
FalI	AAGNNNNNCTT	4 cut(s)	728, 760, 790, 822
FaqI	GGGAC	3 cut(s)	1102, 1227, 1301
FatI	CATG	6 cut(s)	168, 178, 205, 428, 1181, 1189
FbaI	TGATCA	1 cut(s)	1042
Fnu4HI	GCNGC	6 cut(s)	18, 507, 910, 913, 1083, 1273
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	6 cut(s)	18, 507, 910, 913, 1083, 1273
FspBI	CTAG	7 cut(s)	62, 141, 159, 221, 255, 966, 1058
GluI	GCNGC	6 cut(s)	18, 507, 910, 913, 1083, 1273
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	3 cut(s)	502, 1134, 1276
HaeIII	GGCC	2 cut(s)	743, 1283
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	172, 182, 209, 432, 1185, 1193
HincII	GTYRAC	2 cut(s)	396, 1213
HindII	GTYRAC	2 cut(s)	396, 1213
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	7 cut(s)	227, 358, 518, 527, 711, 983, 1289
HphI	GGTGA	6 cut(s)	53, 236, 290, 293, 1268, 1289
Hpy166II	GTNNAC	6 cut(s)	94, 166, 203, 396, 1187, 1213
Hpy188I	TCNGA	7 cut(s)	363, 601, 625, 817, 941, 963, 1265
Hpy188III	TCNNGA	5 cut(s)	680, 736, 947, 1046, 1113
Hpy8I	GTNNAC	6 cut(s)	94, 166, 203, 396, 1187, 1213
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	3 cut(s)	822, 868, 1015
HpyCH4III	ACNGT	5 cut(s)	393, 631, 831, 894, 979
HpyCH4IV	ACGT	4 cut(s)	96, 566, 1004, 1200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 921, 1151, 1174
HpyF3I	CTNAG	3 cut(s)	510, 745, 960
HpySE526I	ACGT	4 cut(s)	96, 566, 1004, 1200
Hsp92II	CATG	6 cut(s)	172, 182, 209, 432, 1185, 1193
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	4 cut(s)	406, 727, 952, 1042
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	4 cut(s)	826, 971, 1099, 1174
Lsp1109I	GCAGC	6 cut(s)	29, 493, 896, 899, 1069, 1284
LweI	GCATC	8 cut(s)	112, 380, 455, 541, 808, 933, 1111, 1244
MaeI	CTAG	7 cut(s)	62, 141, 159, 221, 255, 966, 1058
MaeII	ACGT	4 cut(s)	96, 566, 1004, 1200
MaeIII	GTNAC	9 cut(s)	29, 41, 106, 296, 349, 387, 491, 631, 800
MalI	GATC	4 cut(s)	408, 729, 954, 1044
MboI	GATC	4 cut(s)	406, 727, 952, 1042
MboII	GAAGA	7 cut(s)	194, 315, 416, 534, 617, 798, 1130
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	3 cut(s)	96, 612, 1077
MlyI	GAGTC	2 cut(s)	367, 1283
MmeI	TCCRAC	1 cut(s)	1243
Mph1103I	ATGCAT	3 cut(s)	448, 845, 1237
MseI	TTAA	4 cut(s)	248, 314, 662, 990
MspA1I	CMGCKG	2 cut(s)	864, 1275
MspCI	CTTAAG	1 cut(s)	661
MspR9I	CCNGG	1 cut(s)	1285
MvaI	CCWGG	1 cut(s)	1285
MwoI	GCNNNNNNNGC	4 cut(s)	64, 921, 1151, 1174
NdeII	GATC	4 cut(s)	406, 727, 952, 1042
NlaIII	CATG	6 cut(s)	172, 182, 209, 432, 1185, 1193
NlaIV	GGNNCC	3 cut(s)	488, 658, 973
NmuCI	GTSAC	6 cut(s)	29, 41, 296, 349, 387, 800
NsiI	ATGCAT	3 cut(s)	448, 845, 1237
NspI	RCATGY	3 cut(s)	172, 209, 1193
PciI	ACATGT	1 cut(s)	1189
PciSI	GCTCTTC	1 cut(s)	600
PfeI	GAWTC	5 cut(s)	227, 518, 527, 711, 983
PkrI	GCNGC	6 cut(s)	19, 508, 911, 914, 1084, 1274
PleI	GAGTC	2 cut(s)	366, 1283
PmaCI	CACGTG	1 cut(s)	1201
PmlI	CACGTG	1 cut(s)	1201
PpsI	GAGTC	2 cut(s)	366, 1283
Ppu21I	YACGTR	2 cut(s)	97, 1201
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	1189
PshAI	GACNNNNGTC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	990
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	1283
PspCI	CACGTG	1 cut(s)	1201
PspEI	GGTNACC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	1283
PspN4I	GGNNCC	3 cut(s)	488, 658, 973
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	2 cut(s)	19, 1087
PsuI	RGATCY	1 cut(s)	952
PvuII	CAGCTG	1 cut(s)	864
RsaI	GTAC	4 cut(s)	136, 202, 833, 1007
RsaNI	GTAC	4 cut(s)	135, 201, 832, 1006
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	248, 314, 662, 990
SatI	GCNGC	6 cut(s)	18, 507, 910, 913, 1083, 1273
Sau3AI	GATC	4 cut(s)	406, 727, 952, 1042
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	2 cut(s)	367, 1283
ScrFI	CCNGG	1 cut(s)	1285
SduI	GDGCHC	3 cut(s)	96, 612, 1077
SfaNI	GCATC	8 cut(s)	112, 380, 455, 541, 808, 933, 1111, 1244
SfcI	CTRYAG	2 cut(s)	15, 1083
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	591, 661
SmoI	CTYRAG	2 cut(s)	591, 661
SsiI	CCGC	3 cut(s)	496, 1124, 1275
SspMI	CTAG	7 cut(s)	62, 141, 159, 221, 255, 966, 1058
StyD4I	CCNGG	1 cut(s)	1283
StyI	CCWWGG	2 cut(s)	37, 1057
TaaI	ACNGT	5 cut(s)	393, 631, 831, 894, 979
TaiI	ACGT	4 cut(s)	99, 569, 1007, 1203
TaqI	TCGA	2 cut(s)	409, 946
TatI	WGTACW	3 cut(s)	134, 200, 831
TfiI	GAWTC	5 cut(s)	227, 518, 527, 711, 983
Tru1I	TTAA	4 cut(s)	248, 314, 662, 990
Tru9I	TTAA	4 cut(s)	248, 314, 662, 990
TscAI	CASTG	2 cut(s)	396, 559
TseFI	GTSAC	6 cut(s)	29, 41, 296, 349, 387, 800
TseI	GCWGC	6 cut(s)	17, 506, 909, 912, 1082, 1272
Tsp45I	GTSAC	6 cut(s)	29, 41, 296, 349, 387, 800
TspDTI	ATGAA	5 cut(s)	117, 195, 225, 618, 877
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	396, 559
Vha464I	CTTAAG	1 cut(s)	661
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	4 cut(s)	250, 259, 316, 1010
XceI	RCATGY	3 cut(s)	172, 209, 1193
XmaJI	CCTAGG	1 cut(s)	1057
XspI	CTAG	7 cut(s)	62, 141, 159, 221, 255, 966, 1058
Zsp2I	ATGCAT	3 cut(s)	448, 845, 1237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.