Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005617

Physical Location & Seq

Genomic Coordinates Reverse (-)

18460183 .. 18463077

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATGTTCCCTCTGCAGAACCAAATAGTGACACCCAAGGTGACCAATTTCCTTTGCTACTAGAGCAGATGGAAAGTCATAACAATCGTGTGCACGTAATTGATGTAACAAGGAATGATGATGCTTCATCAAGTACATCTAGTGATGACCAACCTCCTAGAGTGGACATGCCCCAGCATGAAGACAGATCATCAGCAAGTACACATGCCCCCACTTATCAAGCTGCTTCCTCAAACAGATTGAATTCTAGGAATTCCTCATTTATGAGGAGAGGTGATGGGTATAGTCGTCGCCGAAGAAGCCCTTTAAATTCAGGGTTATGGATTGCTGTTGAGCTTGTTGTCACTGTGAGTCAGATTATAGCATCTATTGTTGTTTTGTCACTGTCAACAAATGAAAATCCACAAGCCCCTTTGTTTGCATGGGTTGTGGGTTATGCATCAGGTTGTGTTGCAACACTTCCTGTTCTTTACTGGAGGTTCCGTAACCGCAATAGGGGTTCTGAGCAAGAATCCATTCAATCGCATCAAGGGTCTTCTGAAAGCAGTCCTCCTGAACCAACGTCTTATACAGCTATTTCAATTACACAAGCTTCTGATGAAGAGCACGGTCGCACCTCCGAAACAGTTACAACTAACCCTCAAATTGGAGGACCCTTAAGTGCAAGATGGTGTCATGAAGTGAGGAAGCTCATTCAATTTTGCAGAATTAATGGGTTAGTGGATCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTCTGGTTTGTTGTAGGCAATGTGTGGATTTTTGGAGGTCACTCTGTCCCTTCTGATGCTCCTAAACTGTACAGGTTATGTATAGTGTTCCTTACCTTTAGCTGTATTGGATATGCCATGCCATTCATACTATGTGCAACAATTTGCTGCTGCCTGCCTTGCATCATTTCTGTCCTTGGATTTCGAGAGGATCTTTCTCAGGCTAGAGGAGCCACTGTGGAATCAATTAATGCTCTCCCGACATACAAATTCAAGTTAAAGGAAAATGTGACCAATGATGATCAGGAGGGCAGCCCAGGTAGTGAAGGTGGGCTCTTGGCTGCAGGGACAGAAAAGGAGCGTGAGATATCTGGAGATGATGCGGTTTGTTGTATTTGCTTGGCGAAGTATGCAGATGACGATGAGCTACGGGAGCTACCATGTTTACATGTCTTTCACGTGGAGTGTGTTGACAAATGGTTGAAAATCAATGCATCATGTCCCCTATGCAAAAGCGAGGTCGGAGAGAGCAGCGGTGGCTCGCCATTGGCGAGGGACTCCAGCCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

437

Amino Acids

47.87

Weight (kDa)

5.21

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80400
fragaria_vesca	FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890
malus_domestica	MD09G1215300.v1.1 MD17G1198000.v1.1
prunus_persica	Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1
pyrus_communis	pycom09g13210 pycom17g20290
rosa_chinensis	RchiOBHm_Chr2g0137381
rosa_laevigata	RLG00000019655
rosa_multiflora	Rmu_ssc0000312.1_g000015
rosa_roxburghii	Rroxscaffold_2G00107090
rosa_rugosa	Rorug02G0342000 Rorug02G0342100
rosa_samantha	Rh2AG390200 Rh2BG397600 Rh2CG377500 Rh2DG412900
rosa_wichuraiana	Rw2G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	490, 1121, 1272
AclWI	GGATC	2 cut(s)	732, 957
AcsI	RAATTY	4 cut(s)	244, 253, 310, 1007
AcvI	CACGTG	1 cut(s)	1198
AfaI	GTAC	3 cut(s)	136, 202, 830
AfiI	CCNNNNNNNGG	2 cut(s)	496, 647
AflII	CTTAAG	1 cut(s)	658
AflIII	ACRYGT	1 cut(s)	1186
AgsI	TTSAA	7 cut(s)	244, 521, 582, 698, 733, 1012, 1222
AjnI	CCWGG	1 cut(s)	1054
AluBI	AGCT	8 cut(s)	224, 337, 575, 593, 691, 861, 1165, 1174
AluI	AGCT	8 cut(s)	224, 337, 575, 593, 691, 861, 1165, 1174
Alw21I	GWGCWC	2 cut(s)	96, 609
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	732, 957
AoxI	GGCC	1 cut(s)	738
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	6 cut(s)	224, 906, 909, 1050, 1079, 1269
ApoI	RAATTY	4 cut(s)	244, 253, 310, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	1242, 1274
AseI	ATTAAT	2 cut(s)	711, 987
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	53, 287
AvaII	GGWCC	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	1074
BbrPI	CACGTG	1 cut(s)	1198
BbsI	GAAGAC	2 cut(s)	189, 528
Bbv12I	GWGCWC	2 cut(s)	96, 609
BbvI	GCAGC	6 cut(s)	211, 893, 896, 1062, 1066, 1281
BccI	CCATC	4 cut(s)	64, 272, 663, 730
BciT130I	CCWGG	1 cut(s)	1056
BclI	TGATCA	1 cut(s)	1039
BfaI	CTAG	5 cut(s)	62, 141, 159, 249, 963
BfmI	CTRYAG	2 cut(s)	15, 1080
BfrI	CTTAAG	1 cut(s)	658
BisI	GCNGC	6 cut(s)	225, 907, 910, 1051, 1080, 1270
BlsI	GCNGC	6 cut(s)	226, 908, 911, 1052, 1081, 1271
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	3 cut(s)	482, 655, 970
BmrFI	CCNGG	1 cut(s)	1056
BmsI	GCATC	8 cut(s)	112, 374, 449, 535, 805, 930, 1108, 1241
BpiI	GAAGAC	2 cut(s)	189, 528
BpmI	CTGGAG	3 cut(s)	496, 1131, 1282
BsaAI	YACGTR	2 cut(s)	97, 1198
BsaJI	CCNNGG	3 cut(s)	37, 934, 1054
BsaXI	ACNNNNNCTCC	4 cut(s)	469, 499, 960, 990
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 647
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	3 cut(s)	37, 934, 1054
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	496, 647
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	495, 971
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	2 cut(s)	283, 981
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	211, 893, 896, 1062, 1066, 1281
BseYI	CCCAGC	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	1 cut(s)	740
BsiEI	CGRYCG	1 cut(s)	613
BsiHKAI	GWGCWC	2 cut(s)	96, 609
BslFI	GGGAC	4 cut(s)	791, 1099, 1224, 1307
BslI	CCNNNNNNNGG	2 cut(s)	496, 647
BsmFI	GGGAC	4 cut(s)	791, 1099, 1224, 1307
BsnI	GGCC	1 cut(s)	740
Bsp1286I	GDGCHC	3 cut(s)	96, 609, 1074
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	188, 724, 949, 1039
BspACI	CCGC	3 cut(s)	490, 1121, 1272
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	2 cut(s)	496, 970
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	482, 655, 970
BspMAI	CTGCAG	2 cut(s)	19, 1084
BspPI	GGATC	2 cut(s)	732, 957
BspQI	GCTCTTC	1 cut(s)	597
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	784
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	37, 934, 1054
BssMI	GATC	4 cut(s)	188, 724, 949, 1039
BssT1I	CCWWGG	2 cut(s)	37, 934
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	7 cut(s)	349, 387, 611, 628, 828, 976, 1308
Bst6I	CTCTTC	1 cut(s)	597
BstAFI	CTTAAG	1 cut(s)	658
BstAUI	TGTACA	1 cut(s)	828
BstBAI	YACGTR	2 cut(s)	97, 1198
BstC8I	GCNNGC	2 cut(s)	914, 1280
BstDEI	CTNAG	3 cut(s)	504, 742, 957
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	191, 727, 952, 1042
BstMBI	GATC	4 cut(s)	188, 724, 949, 1039
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 300, 918, 968, 1148, 1171, 1275
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	3 cut(s)	172, 209, 1190
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	2 cut(s)	15, 1080
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	6 cut(s)	211, 893, 896, 1062, 1066, 1281
BstV2I	GAAGAC	2 cut(s)	189, 528
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	345, 383, 972
Cac8I	GCNNGC	2 cut(s)	914, 1280
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	3 cut(s)	135, 201, 829
CviAII	CATG	9 cut(s)	169, 179, 206, 423, 677, 877, 1179, 1187, 1236
CviQI	GTAC	3 cut(s)	135, 201, 829
DdeI	CTNAG	3 cut(s)	504, 742, 957
DpnI	GATC	4 cut(s)	190, 726, 951, 1041
DpnII	GATC	4 cut(s)	188, 724, 949, 1039
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	37, 934
Eco24I	GRGCYC	1 cut(s)	1074
Eco32I	GATATC	1 cut(s)	1107
Eco47I	GGWCC	1 cut(s)	653
Eco72I	CACGTG	1 cut(s)	1198
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	2 cut(s)	244, 253
EcoRII	CCWGG	1 cut(s)	1054
EcoRV	GATATC	1 cut(s)	1107
EcoT14I	CCWWGG	2 cut(s)	37, 934
EcoT22I	ATGCAT	2 cut(s)	442, 1234
EcoT38I	GRGCYC	1 cut(s)	1074
ErhI	CCWWGG	2 cut(s)	37, 934
FaeI	CATG	9 cut(s)	172, 182, 209, 426, 680, 880, 1182, 1190, 1239
FalI	AAGNNNNNCTT	4 cut(s)	289, 321, 725, 757
FaqI	GGGAC	4 cut(s)	791, 1099, 1224, 1307
FatI	CATG	9 cut(s)	168, 178, 205, 422, 676, 876, 1178, 1186, 1235
FbaI	TGATCA	1 cut(s)	1039
Fnu4HI	GCNGC	6 cut(s)	225, 907, 910, 1051, 1080, 1270
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	1074
Fsp4HI	GCNGC	6 cut(s)	225, 907, 910, 1051, 1080, 1270
FspBI	CTAG	5 cut(s)	62, 141, 159, 249, 963
GluI	GCNGC	6 cut(s)	225, 907, 910, 1051, 1080, 1270
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	3 cut(s)	496, 1131, 1282
HaeIII	GGCC	1 cut(s)	740
Hin1II	CATG	9 cut(s)	172, 182, 209, 426, 680, 880, 1182, 1190, 1239
HincII	GTYRAC	2 cut(s)	390, 1210
HindII	GTYRAC	2 cut(s)	390, 1210
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	4 cut(s)	352, 512, 980, 1295
HphI	GGTGA	2 cut(s)	53, 287
Hpy166II	GTNNAC	6 cut(s)	94, 166, 203, 390, 1184, 1210
Hpy188I	TCNGA	7 cut(s)	357, 505, 541, 598, 622, 814, 1262
Hpy188III	TCNNGA	7 cut(s)	554, 677, 733, 944, 997, 1043, 1110
Hpy8I	GTNNAC	6 cut(s)	94, 166, 203, 390, 1184, 1210
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	819, 1058
HpyCH4III	ACNGT	7 cut(s)	349, 387, 611, 628, 828, 976, 1308
HpyCH4IV	ACGT	3 cut(s)	96, 563, 1197
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 300, 918, 968, 1148, 1171, 1275
HpyF3I	CTNAG	3 cut(s)	504, 742, 957
HpySE526I	ACGT	3 cut(s)	96, 563, 1197
Hsp92II	CATG	9 cut(s)	172, 182, 209, 426, 680, 880, 1182, 1190, 1239
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	4 cut(s)	188, 724, 949, 1039
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	4 cut(s)	823, 968, 1096, 1171
Lsp1109I	GCAGC	6 cut(s)	211, 893, 896, 1062, 1066, 1281
LweI	GCATC	8 cut(s)	112, 374, 449, 535, 805, 930, 1108, 1241
MaeI	CTAG	5 cut(s)	62, 141, 159, 249, 963
MaeII	ACGT	3 cut(s)	96, 563, 1197
MaeIII	GTNAC	9 cut(s)	29, 41, 106, 343, 381, 485, 628, 797, 1027
MalI	GATC	4 cut(s)	190, 726, 951, 1041
MboI	GATC	4 cut(s)	188, 724, 949, 1039
MboII	GAAGA	4 cut(s)	194, 309, 528, 614
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	3 cut(s)	96, 609, 1074
MlyI	GAGTC	2 cut(s)	361, 1289
MmeI	TCCRAC	1 cut(s)	1240
Mph1103I	ATGCAT	2 cut(s)	442, 1234
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	5 cut(s)	308, 659, 711, 987, 1016
MspA1I	CMGCKG	1 cut(s)	1272
MspCI	CTTAAG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	1056
MwoI	GCNNNNNNNGC	7 cut(s)	64, 300, 918, 968, 1148, 1171, 1275
NdeII	GATC	4 cut(s)	188, 724, 949, 1039
NlaIII	CATG	9 cut(s)	172, 182, 209, 426, 680, 880, 1182, 1190, 1239
NlaIV	GGNNCC	3 cut(s)	482, 655, 970
NmuCI	GTSAC	6 cut(s)	29, 41, 343, 381, 797, 1027
NsiI	ATGCAT	2 cut(s)	442, 1234
NspI	RCATGY	3 cut(s)	172, 209, 1190
PagI	TCATGA	1 cut(s)	676
PciI	ACATGT	1 cut(s)	1186
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	1286
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	512, 980
PkrI	GCNGC	6 cut(s)	226, 908, 911, 1052, 1081, 1271
PleI	GAGTC	2 cut(s)	360, 1289
PmaCI	CACGTG	1 cut(s)	1198
PmlI	CACGTG	1 cut(s)	1198
PpsI	GAGTC	2 cut(s)	360, 1289
Ppu21I	YACGTR	2 cut(s)	97, 1198
PpuMI	RGGWCCY	1 cut(s)	653
PscI	ACATGT	1 cut(s)	1186
PshBI	ATTAAT	2 cut(s)	711, 987
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	1054
PspCI	CACGTG	1 cut(s)	1198
PspEI	GGTNACC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	3 cut(s)	482, 655, 970
PspPI	GGNCC	1 cut(s)	653
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	2 cut(s)	19, 1084
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	3 cut(s)	136, 202, 830
RsaNI	GTAC	3 cut(s)	135, 201, 829
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	308, 659, 711, 987, 1016
SatI	GCNGC	6 cut(s)	225, 907, 910, 1051, 1080, 1270
Sau3AI	GATC	4 cut(s)	188, 724, 949, 1039
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	2 cut(s)	361, 1289
ScrFI	CCNGG	1 cut(s)	1056
SduI	GDGCHC	3 cut(s)	96, 609, 1074
SfaNI	GCATC	8 cut(s)	112, 374, 449, 535, 805, 930, 1108, 1241
SfcI	CTRYAG	2 cut(s)	15, 1080
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
SsiI	CCGC	3 cut(s)	490, 1121, 1272
SspMI	CTAG	5 cut(s)	62, 141, 159, 249, 963
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	2 cut(s)	37, 934
TaaI	ACNGT	7 cut(s)	349, 387, 611, 628, 828, 976, 1308
TaiI	ACGT	3 cut(s)	99, 566, 1200
TaqI	TCGA	1 cut(s)	943
TatI	WGTACW	3 cut(s)	134, 200, 828
TfiI	GAWTC	2 cut(s)	512, 980
Tru1I	TTAA	5 cut(s)	308, 659, 711, 987, 1016
Tru9I	TTAA	5 cut(s)	308, 659, 711, 987, 1016
TscAI	CASTG	3 cut(s)	352, 390, 979
TseFI	GTSAC	6 cut(s)	29, 41, 343, 381, 797, 1027
TseI	GCWGC	6 cut(s)	224, 906, 909, 1050, 1079, 1269
Tsp45I	GTSAC	6 cut(s)	29, 41, 343, 381, 797, 1027
TspDTI	ATGAA	6 cut(s)	117, 195, 411, 615, 693, 874
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	352, 390, 979
Vha464I	CTTAAG	1 cut(s)	658
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	2 cut(s)	711, 987
XapI	RAATTY	4 cut(s)	244, 253, 310, 1007
XceI	RCATGY	3 cut(s)	172, 209, 1190
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	5 cut(s)	62, 141, 159, 249, 963
Zsp2I	ATGCAT	2 cut(s)	442, 1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.