Prupe.3G074400_v2.0.a1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005617
Physical Location & Seq
Reverse (-)
5437163 .. 5441208
4046 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G074400.1

Sequence Viewer

Length: 1278 bp
ATGGATGTTCCCTGTCCAGAACCAAATAGTGACGCTCAAAGTGACCAATTTCCTTTGCTACTAGAGCAGATGGAAAGCCCTAACGATCATGTGCACATAATTGATGTAACAAGGAATCGTGATACTTCAGCAAGTTCATCTAGTGATGACCGACCTCCTAGAGTGGACTTGCCTCAGCATGAAGACAGACCATCAGCTAGTACACATGCCCCCACTTATCAAGCTGCTTCATCCTCCTCAAACAGATTAAATTCTAGGAATTCGTCATTTATGAGGAGAGGTGATGGGTACAGTCGTCGCCGAAGAAGCCCTTTGAATTCAGGGTTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATTATAGCATCTATTGTTGTTTTGTCATTGTCAACAAATGAAAATCCACAAGCCCCTTTGTTTGCATGGGTTGTGGGTTATGCATCAGGTTGTGTTGCAACACTTCCTATTCTTTACTGGAGGTTCCGTAACCGCAACAGAGGTGCTGAGCAAGAATCCATTCAATCGCATCAAGGGTCTTCTGAAAGCAATCCTCCTGAACCAATGTCTTATACAGCTATTTCAATTTCTCAAGCATCTGATGAAGAAAACAATCGCACCTCAGACACAGTCACAAATAACCCTCATATTGCAGGACCCTTAAGTGCAAGACTTAATGGGTTAGTGGATCATTTCAAGATGGCCTTAGATTGCTTTTTTGCAGTCTGGTTTGTGGTAGGCAATGTGTGGATTTTTGGAGGCCACTCTTCTCCCTCTGATGCTCCTAAATTGTACAGGTTATGCATTGTGTTCCTAACCTTTAGTTGTATTGGATATGCCATGCCATTCATACTATGTGCAACAATTTGTTGCTGCCTGCCCTGCATCATCTCTGTCCTGGGATTTCGAGGGGATTTTTCTCAGACTAGAGGAGCCACTGTGGAATCAATTAATGCTCTCCCAACCTACAAATTCAAGTTAAAGGAAAATGAGACCAATAATGATCACGAGTGCAACCTGGATAGTGAAGGTGGGCTCTTGGCTGCAGGGACAGAAAAGGAGCGCGCAATATCAGGAGAAGATGCGGTTTGTTGTATTTGCTTGGCAAAGTATGCAGATGAGGATGAGCTAAGAGAGCTACCATGTTTACATGTCTTTCATGTGGAGTGCGTTGACAAATGGTTGAAAATCAATGCCTCATGTCCCCTCTGTAAAAGTGAGGTTGGAGAGAGCAGCAGTGCCTCGCCATTGGCCAGAGACTCGGACCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

426

Amino Acids

46.72

Weight (kDa)

5.13

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1068
AciI CCGC 2 cut(s) 496, 1088
AclWI GGATC 1 cut(s) 699
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 4 cut(s) 250, 259, 316, 974
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 3 cut(s) 202, 290, 797
AflII CTTAAG 1 cut(s) 664
AflIII ACRYGT 1 cut(s) 1153
AgsI TTSAA 6 cut(s) 316, 527, 588, 700, 979, 1189
AjnI CCWGG 2 cut(s) 900, 1020
AluBI AGCT 6 cut(s) 197, 224, 343, 581, 1132, 1141
AluI AGCT 6 cut(s) 197, 224, 343, 581, 1132, 1141
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 989, 1254
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 699
AoxI GGCC 3 cut(s) 705, 763, 1254
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 224, 876, 1046, 1236
ApoI RAATTY 4 cut(s) 250, 259, 316, 974
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 1068, 1070
AspS9I GGNCC 2 cut(s) 659, 1267
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 659, 1267
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 280, 313
BalI TGGCCA 1 cut(s) 1256
BanII GRGCYC 1 cut(s) 1041
BauI CACGAG 1 cut(s) 1010
BbsI GAAGAC 2 cut(s) 189, 534
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 211, 863, 1033, 1248
BccI CCATC 4 cut(s) 64, 199, 278, 697
BciT130I CCWGG 2 cut(s) 902, 1022
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 989, 1254
BfaI CTAG 6 cut(s) 62, 141, 159, 198, 255, 930
BfmI CTRYAG 1 cut(s) 1047
BfrI CTTAAG 1 cut(s) 664
BisI GCNGC 4 cut(s) 225, 877, 1047, 1237
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 4 cut(s) 226, 878, 1048, 1238
Bme1390I CCNGG 2 cut(s) 902, 1022
Bme18I GGWCC 2 cut(s) 659, 1267
BmgT120I GGNCC 2 cut(s) 659, 1267
BmiI GGNNCC 3 cut(s) 488, 661, 937
BmrFI CCNGG 2 cut(s) 902, 1022
BmsI GCATC 7 cut(s) 380, 455, 541, 608, 772, 897, 1075
BpiI GAAGAC 2 cut(s) 189, 534
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 1 cut(s) 901
BsaXI ACNNNNNCTCC 4 cut(s) 475, 505, 927, 957
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 2 cut(s) 902, 1022
BseDI CCNNGG 1 cut(s) 901
BseGI GGATG 3 cut(s) 10, 230, 1132
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 4 cut(s) 188, 501, 639, 938
BseNI ACTGG 1 cut(s) 485
BsePI GCGCGC 1 cut(s) 1066
BseRI GAGGAG 3 cut(s) 226, 289, 948
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 4 cut(s) 211, 863, 1033, 1248
Bsh1236I CGCG 1 cut(s) 1068
BshFI GGCC 3 cut(s) 707, 765, 1256
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 2 cut(s) 1066, 1191
BsmAI GTCTC 2 cut(s) 989, 1254
BsmFI GGGAC 2 cut(s) 1066, 1191
BsnI GGCC 3 cut(s) 707, 765, 1256
Bso31I GGTCTC 1 cut(s) 989
Bsp1286I GDGCHC 2 cut(s) 96, 1041
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 3 cut(s) 85, 691, 1006
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 2 cut(s) 496, 1088
BspANI GGCC 3 cut(s) 707, 765, 1256
BspCNI CTCAG 4 cut(s) 187, 502, 638, 937
BspFNI CGCG 1 cut(s) 1068
BspLI GGNNCC 3 cut(s) 488, 661, 937
BspMAI CTGCAG 1 cut(s) 1051
BspPI GGATC 1 cut(s) 699
BspTI CTTAAG 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 901
BssHII GCGCGC 1 cut(s) 1066
BssMI GATC 3 cut(s) 85, 691, 1006
BssSI CACGAG 1 cut(s) 1010
Bst2BI CACGAG 1 cut(s) 1010
Bst2UI CCWGG 2 cut(s) 902, 1022
Bst4CI ACNGT 4 cut(s) 293, 355, 634, 943
Bst6I CTCTTC 1 cut(s) 775
BstAFI CTTAAG 1 cut(s) 664
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstAUI TGTACA 1 cut(s) 795
BstC8I GCNNGC 2 cut(s) 881, 1068
BstDEI CTNAG 6 cut(s) 174, 510, 625, 709, 924, 1133
BstF5I GGATG 3 cut(s) 10, 230, 1132
BstFNI CGCG 1 cut(s) 1068
BstHHI GCGC 2 cut(s) 1068, 1070
BstKTI GATC 3 cut(s) 88, 694, 1009
BstMAI GTCTC 2 cut(s) 989, 1254
BstMBI GATC 3 cut(s) 85, 691, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 64, 306, 885, 1115, 1138
BstNI CCWGG 2 cut(s) 902, 1022
BstNSI RCATGY 2 cut(s) 209, 1157
BstSCI CCNGG 2 cut(s) 900, 1020
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 1068
BstV1I GCAGC 4 cut(s) 211, 863, 1033, 1248
BstV2I GAAGAC 2 cut(s) 189, 534
BsuRI GGCC 3 cut(s) 707, 765, 1256
BtsCI GGATG 3 cut(s) 10, 230, 1132
BtsI GCAGTG 1 cut(s) 1246
BtsIMutI CAGTG 3 cut(s) 351, 939, 1246
Cac8I GCNNGC 2 cut(s) 881, 1068
CfoI GCGC 2 cut(s) 1068, 1070
Cfr13I GGNCC 2 cut(s) 659, 1267
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 201, 289, 796
CviAII CATG 9 cut(s) 89, 179, 206, 429, 844, 1146, 1154, 1163, 1203
CviQI GTAC 3 cut(s) 201, 289, 796
DdeI CTNAG 6 cut(s) 174, 510, 625, 709, 924, 1133
DpnI GATC 3 cut(s) 87, 693, 1008
DpnII GATC 3 cut(s) 85, 691, 1006
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 1 cut(s) 775
EarI CTCTTC 1 cut(s) 775
Eco24I GRGCYC 1 cut(s) 1041
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 2 cut(s) 659, 1267
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 259, 316
EcoRII CCWGG 2 cut(s) 900, 1020
EcoT22I ATGCAT 2 cut(s) 448, 809
EcoT38I GRGCYC 1 cut(s) 1041
FaeI CATG 9 cut(s) 92, 182, 209, 432, 847, 1149, 1157, 1166, 1206
FalI AAGNNNNNCTT 4 cut(s) 295, 327, 692, 724
FaqI GGGAC 2 cut(s) 1066, 1191
FatI CATG 9 cut(s) 88, 178, 205, 428, 843, 1145, 1153, 1162, 1202
FbaI TGATCA 1 cut(s) 1006
Fnu4HI GCNGC 4 cut(s) 225, 877, 1047, 1237
FokI GGATG 3 cut(s) 17, 217, 1139
FriOI GRGCYC 1 cut(s) 1041
Fsp4HI GCNGC 4 cut(s) 225, 877, 1047, 1237
FspBI CTAG 6 cut(s) 62, 141, 159, 198, 255, 930
GlaI GCGC 2 cut(s) 1067, 1069
GluI GCNGC 4 cut(s) 225, 877, 1047, 1237
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 3 cut(s) 707, 765, 1256
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 1068, 1070
Hin1II CATG 9 cut(s) 92, 182, 209, 432, 847, 1149, 1157, 1166, 1206
Hin6I GCGC 2 cut(s) 1066, 1068
HinP1I GCGC 2 cut(s) 1066, 1068
HincII GTYRAC 2 cut(s) 396, 1177
HindII GTYRAC 2 cut(s) 396, 1177
HinfI GANTC 5 cut(s) 115, 358, 518, 947, 1262
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 6 cut(s) 94, 166, 203, 396, 1151, 1177
Hpy188I TCNGA 7 cut(s) 363, 547, 604, 628, 781, 927, 1267
Hpy188III TCNNGA 6 cut(s) 17, 119, 560, 700, 1010, 1077
Hpy8I GTNNAC 6 cut(s) 94, 166, 203, 396, 1151, 1177
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 1025
HpyCH4III ACNGT 4 cut(s) 293, 355, 634, 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 306, 885, 1115, 1138
HpyF3I CTNAG 6 cut(s) 174, 510, 625, 709, 924, 1133
Hsp92II CATG 9 cut(s) 92, 182, 209, 432, 847, 1149, 1157, 1166, 1206
HspAI GCGC 2 cut(s) 1066, 1068
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 3 cut(s) 85, 691, 1006
LmnI GCTCC 3 cut(s) 790, 935, 1063
Lsp1109I GCAGC 4 cut(s) 211, 863, 1033, 1248
LweI GCATC 7 cut(s) 380, 455, 541, 608, 772, 897, 1075
MaeI CTAG 6 cut(s) 62, 141, 159, 198, 255, 930
MaeIII GTNAC 6 cut(s) 29, 41, 106, 349, 491, 634
MalI GATC 3 cut(s) 87, 693, 1008
MboI GATC 3 cut(s) 85, 691, 1006
MboII GAAGA 6 cut(s) 194, 315, 534, 620, 762, 1094
MhlI GDGCHC 2 cut(s) 96, 1041
MlsI TGGCCA 1 cut(s) 1256
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 2 cut(s) 367, 1256
MmeI TCCRAC 1 cut(s) 1207
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 2 cut(s) 448, 809
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 5 cut(s) 248, 665, 678, 954, 983
Msp20I TGGCCA 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 664
MspR9I CCNGG 2 cut(s) 902, 1022
MvaI CCWGG 2 cut(s) 902, 1022
MvnI CGCG 1 cut(s) 1068
MwoI GCNNNNNNNGC 5 cut(s) 64, 306, 885, 1115, 1138
NdeII GATC 3 cut(s) 85, 691, 1006
NlaIII CATG 9 cut(s) 92, 182, 209, 432, 847, 1149, 1157, 1166, 1206
NlaIV GGNNCC 3 cut(s) 488, 661, 937
NmuCI GTSAC 4 cut(s) 29, 41, 349, 634
NsiI ATGCAT 2 cut(s) 448, 809
NspI RCATGY 2 cut(s) 209, 1157
PauI GCGCGC 1 cut(s) 1066
PciI ACATGT 1 cut(s) 1153
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 115, 518, 947
PflFI GACNNNGTC 1 cut(s) 632
PkrI GCNGC 4 cut(s) 226, 878, 1048, 1238
PleI GAGTC 2 cut(s) 366, 1256
PpsI GAGTC 2 cut(s) 366, 1256
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 1153
PshBI ATTAAT 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 900, 1020
PspGI CCWGG 2 cut(s) 900, 1020
PspN4I GGNNCC 3 cut(s) 488, 661, 937
PspPI GGNCC 2 cut(s) 659, 1267
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 1 cut(s) 1051
PsyI GACNNNGTC 1 cut(s) 632
PteI GCGCGC 1 cut(s) 1066
RsaI GTAC 3 cut(s) 202, 290, 797
RsaNI GTAC 3 cut(s) 201, 289, 796
SaqAI TTAA 5 cut(s) 248, 665, 678, 954, 983
SatI GCNGC 4 cut(s) 225, 877, 1047, 1237
Sau3AI GATC 3 cut(s) 85, 691, 1006
Sau96I GGNCC 2 cut(s) 659, 1267
SchI GAGTC 2 cut(s) 367, 1256
ScrFI CCNGG 2 cut(s) 902, 1022
SduI GDGCHC 2 cut(s) 96, 1041
SfaNI GCATC 7 cut(s) 380, 455, 541, 608, 772, 897, 1075
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 2 cut(s) 659, 1267
SmlI CTYRAG 2 cut(s) 594, 664
SmoI CTYRAG 2 cut(s) 594, 664
SsiI CCGC 2 cut(s) 496, 1088
SspMI CTAG 6 cut(s) 62, 141, 159, 198, 255, 930
StyD4I CCNGG 2 cut(s) 900, 1020
TaaI ACNGT 4 cut(s) 293, 355, 634, 943
TaqI TCGA 1 cut(s) 910
TaqII GACCGA 1 cut(s) 165
TatI WGTACW 2 cut(s) 200, 795
TfiI GAWTC 3 cut(s) 115, 518, 947
Tru1I TTAA 5 cut(s) 248, 665, 678, 954, 983
Tru9I TTAA 5 cut(s) 248, 665, 678, 954, 983
TscAI CASTG 3 cut(s) 358, 946, 1246
TseFI GTSAC 4 cut(s) 29, 41, 349, 634
TseI GCWGC 4 cut(s) 224, 876, 1046, 1236
Tsp45I GTSAC 4 cut(s) 29, 41, 349, 634
TspDTI ATGAA 7 cut(s) 126, 195, 219, 417, 621, 841, 1151
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 358, 946, 1246
Tth111I GACNNNGTC 1 cut(s) 632
Vha464I CTTAAG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 659, 1267
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 4 cut(s) 250, 259, 316, 974
XceI RCATGY 2 cut(s) 209, 1157
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 6 cut(s) 62, 141, 159, 198, 255, 930
Zsp2I ATGCAT 2 cut(s) 448, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.