Rorug02G0342000

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005617
Physical Location & Seq
Forward (+)
42558564 .. 42565587
7024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0342000.1

Sequence Viewer

Length: 2604 bp
ATGGCTTTGGTCGACGTCACCAAATCTTGCCTCGATTCAATTAGCCAGATATCGGAGCAAATTGAAGGTTCTGTTCTTTACCTAGATGCTGGATCTACAGAGAGTTTCCAGTACATTGGAGCATTTCCTCTCTTACTCAACCATGGAGTTCGTGCCATTTGCAGTTTGGAAAATATGTCTTCTCTTGATGCGGTAGTTGATTGGAATGCAAATTCTGATCCTGATAGGAAAGTCGTGGTGGTAACAACTCGTTTGCTAAGTGATGCACATCGATATATATTACGTTGTCTTAGCACTCATCCAGCTGTCCATTGTTGTACTATATTCACATCTATCTCAGAGATAGCCCATTCAGCATATCCTGATTCACCTCTGGGACCAGATGCATTTCATGAATATGAATCCTTGCTTGTCCAAGATTATGAGGAACTTGTCAAGAAAGGTGTAAAGAAACCCTTACAGCCGGGTGTTAGCAACTTCAAGGATAATATAGATTTAGGAGATGAAGGACGGTCACAACTTGCTCCGAGTGAAGAGGACATATCTCACCCCCAAGCTAGTTCAACTGCAAGAGATTCCTATGGAGAGAATCTGATTGCTGATACAGAAGTAGGGAAAAATTTGGTTGTTTCTGTGCGTCACTTCCCAATGATTATCTGTCCTTTTTCACCAAGAGTCTTTGTTTTACCTCCAGAGGGATCAGTTGCTGAAGCATACTTATCAGCTAAACATGAGGATGCCCTTAGTCCTGGATTACCCTCCTTAAGTACTGGGTTGCTTTCTGATGGTGATGATATTCCTCCTGGGGCAACTCTTACAGCAAATTTTCTTTACCATTTTGCGGCCAAGTTGGACCTGAAGATGGAGATATTTTCACTTGGTGATCTCTCAAAAACTGTGGGGAAGATGTTGACAGACATGTCAAGTCTTTATGATGTTGGTCGCCGTAAACGATCAGCAGGGCTATTACTCATTGACCGTACACTAGATCTTCTTACTCCATGCTGTCATGGAGATTCACTTGTTGACCGTGTGTTTTCATCCTTGCCTCGTAGGGAAAATACAGCATCCTATACTCAAATAAAAACCTCAAAAAGCCAACTAAAACAGGGCCCTTCAAACCTGGAACGTGCTTCTCTTGATGTTCAGATACCACTTGCTAAAATTCTAAGTGAAGAAGATTGCAAGATAGAGAACTTTCGGCTATTAGAAAGCATTGAAGCTTTTCTATGTGGGTGGGATTCTGGAAACTCTGCTTCTCAAGTTTTAGATCTGAGCAATCTCAAGAACAAAATTCATGATGAGAAGCTTCCCCAGTTAGAGAATGAGCTTCTAAGAGGGTCTCTTGTGTCCACTGAAAGTTTTCGAGGAACACCATATTTGGAAACTCTACTAGATAGGAAAACCAAAGATGGGACCATACTAGTAAAGAAGTGGCTTCAAGAAGCTCTTCGTCGGGAAAATATCTCTGTGAATGTGAAATCCCGTCCTGGTTTTGCTACAAAGTCAGAGTTGCAAGCTATGACAAAAGCACTGGCCAAATCCCAGTCATCTCTACTGAAAAACAAAGGAATTATTCAGTTGGCAGCGGCCGTACTGGCTGCACTTGATGAATCTCATTCATCCAGATGGGAAGCATTTAGCAATGCAGAGAAAATATTAAGTGTAAGTGCTGAAGACACAAGCCAGAGTCTTGCTGTGCAAATTGGTGATTTTATTAATAAGAGTGCTTTGTTGGGATTGCATGGACAGAAGAATGGAAAATTTGGGGTCTCCCAAGGGGTACTTTCTTTTCAGGATACTTTGTATCTTATGATTTCTGGATATATATTAGCTGGTGAGAATTTCCCAACAGCTGGGAATGATGGCCCCTTTTCTTGGCAAGAGGAGCAACTATTGAAAGATTCTATTGTTGAAGCAATTCTTGAAAACCCTTCAATAGCAAAACTGAAGTTTCTTCATGGCCTAATGGAAGAGCTTGAGACCAACTTAAGCAGGATCAAATCAGAGGAAAGCAAGGGGACATCCTCAGATCAAATAGATATCGATGATCTTGATGACGATCAGTGGGGTAAATGGGGTGATGAAGATGTTGATGATACAAATAACAGTAAAGAGAAAGTGTATGATGACATGCAGCTGAAGTTGGAGTTGCGTGATAGGGTGGATAACCTTTTCAAATTCCTTCACAAGTTATCCAGTTTGAAGAGTCGAAACATACCATTGAAGGATGGGGCTTTAGATTCGGACAATAATTTCAGCGGAGATCCATATGCTAGTAGAGGATTACTTTATAAGCTTCTAACACGGGTATTAAGCAAGAATGATGTTCCTGGTTTGGAGTATCACTCTTCTACTGTGGGGCAACTATTTAAAAGTGGCTTCAGAAGATTTGGCCTTGGGCAGGCAAAACCAAGTTTAGCCGATCAAAATGTCATCCTTGTATTTGTTATTGGGGGCATCAATGGTGTGGAGGTTCGCGAAGCTCAAGAGGCATTATCTGAAAGTGGAAGACCGGATATAGAAATGATTCTTGGTGGAACAACTCTCCTAACTCCTGACGACATGCTTGACTTGCTACTGGGGAAATCTAGTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

867

Amino Acids

95.25

Weight (kDa)

5.01

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 502 - 858 3.7e-08 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2295
AasI GACNNNNNNGTC 1 cut(s) 919
AatII GACGTC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 1856
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 2481
AciI CCGC 4 cut(s) 191, 842, 1589, 2262
AclWI GGATC 5 cut(s) 100, 212, 706, 2006, 2261
AcoI YGGCCR 3 cut(s) 843, 1536, 1590
AcsI RAATTY 8 cut(s) 211, 619, 823, 1164, 1293, 1763, 1843, 2180
AcuI CTGAAG 6 cut(s) 729, 878, 1695, 1970, 2162, 2368
AcyI GRCGYC 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 6 cut(s) 113, 319, 769, 982, 1596, 1785
AfiI CCNNNNNNNGG 8 cut(s) 52, 695, 841, 862, 1413, 1856, 1878, 2404
AflII CTTAAG 2 cut(s) 763, 1990
AflIII ACRYGT 1 cut(s) 918
AhlI ACTAGT 1 cut(s) 1423
AjnI CCWGG 5 cut(s) 748, 802, 1122, 1489, 2332
AjuI GAANNNNNNNTTGG 2 cut(s) 2517, 2549
Alw26I GTCTC 3 cut(s) 1347, 1777, 1976
AlwI GGATC 5 cut(s) 100, 212, 706, 2006, 2261
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 7 cut(s) 843, 1111, 1536, 1590, 1867, 1963, 2395
ApaI GGGCCC 1 cut(s) 1115
ApeKI GCWGC 3 cut(s) 1586, 1601, 2137
ApoI RAATTY 8 cut(s) 211, 619, 823, 1164, 1293, 1763, 1843, 2180
AseI ATTAAT 1 cut(s) 1719
Asp700I GAANNNNTTC 5 cut(s) 1224, 1362, 1449, 1920, 2529
AspS9I GGNCC 6 cut(s) 377, 853, 1111, 1112, 1416, 1868
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 9 cut(s) 10, 360, 539, 660, 800, 893, 1721, 1850, 2093
AvaII GGWCC 3 cut(s) 377, 853, 1416
BaeGI GKGCMC 1 cut(s) 1115
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BalI TGGCCA 1 cut(s) 1538
BanII GRGCYC 1 cut(s) 1115
BbsI GAAGAC 3 cut(s) 171, 1683, 2518
BbvI GCAGC 3 cut(s) 1588, 1598, 2149
BccI CCATC 6 cut(s) 779, 856, 1406, 1623, 1859, 2225
BceAI ACGGC 2 cut(s) 930, 1577
BciT130I CCWGG 5 cut(s) 750, 804, 1124, 1491, 2334
BciVI GTATCC 1 cut(s) 1792
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 1347, 1777, 1976
BcuI ACTAGT 1 cut(s) 1423
BfaI CTAG 7 cut(s) 83, 558, 986, 1394, 1424, 2277, 2592
BfmI CTRYAG 1 cut(s) 96
BfrI CTTAAG 2 cut(s) 763, 1990
BfuI GTATCC 1 cut(s) 1792
BglI GCCNNNNNGGC 1 cut(s) 1598
BglII AGATCT 2 cut(s) 988, 1270
BisI GCNGC 5 cut(s) 843, 1587, 1590, 1602, 2138
BlsI GCNGC 5 cut(s) 844, 1588, 1591, 1603, 2139
BmcAI AGTACT 1 cut(s) 769
Bme1390I CCNGG 6 cut(s) 465, 750, 804, 1124, 1491, 2334
Bme18I GGWCC 3 cut(s) 377, 853, 1416
BmgT120I GGNCC 6 cut(s) 377, 853, 1111, 1112, 1416, 1868
BmiI GGNNCC 4 cut(s) 378, 1113, 1417, 1870
BmrFI CCNGG 6 cut(s) 465, 750, 804, 1124, 1491, 2334
BmrI ACTGGG 4 cut(s) 780, 1309, 1540, 2591
BmsI GCATC 7 cut(s) 76, 178, 253, 373, 727, 1076, 2469
BmuI ACTGGG 4 cut(s) 780, 1309, 1540, 2591
BpiI GAAGAC 3 cut(s) 171, 1683, 2518
BplI GAGNNNNNCTC 2 cut(s) 2333, 2365
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 4 cut(s) 1245, 1268, 2000, 2472
BpuMI CCSGG 1 cut(s) 465
Bsa29I ATCGAT 2 cut(s) 271, 2046
BsaBI GATNNNNATC 2 cut(s) 267, 2061
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 3 cut(s) 1347, 1777, 1976
BsaJI CCNNGG 4 cut(s) 142, 803, 1777, 2398
BsaWI WCCGGW 1 cut(s) 2515
Bsc4I CCNNNNNNNGG 8 cut(s) 52, 695, 841, 862, 1413, 1856, 1878, 2404
Bse1I ACTGG 8 cut(s) 109, 775, 1315, 1539, 1546, 1602, 2199, 2586
Bse3DI GCAATG 1 cut(s) 1651
Bse8I GATNNNNATC 2 cut(s) 267, 2061
BseBI CCWGG 5 cut(s) 750, 804, 1124, 1491, 2334
BseCI ATCGAT 2 cut(s) 271, 2046
BseDI CCNNGG 4 cut(s) 142, 803, 1777, 2398
BseGI GGATG 8 cut(s) 298, 742, 1040, 1067, 1622, 2024, 2236, 2436
BseJI GATNNNNATC 2 cut(s) 267, 2061
BseLI CCNNNNNNNGG 8 cut(s) 52, 695, 841, 862, 1413, 1856, 1878, 2404
BseMI GCAATG 1 cut(s) 1651
BseMII CTCAG 3 cut(s) 351, 1265, 2043
BseNI ACTGG 8 cut(s) 109, 775, 1315, 1539, 1546, 1602, 2199, 2586
BseRI GAGGAG 1 cut(s) 1901
BseSI GKGCMC 1 cut(s) 1115
BseX3I CGGCCG 1 cut(s) 1590
BseXI GCAGC 3 cut(s) 1588, 1598, 2149
BseYI CCCAGC 1 cut(s) 1856
BsgI GTGCAG 1 cut(s) 1587
Bsh1236I CGCG 1 cut(s) 2481
Bsh1285I CGRYCG 1 cut(s) 1593
BshFI GGCC 7 cut(s) 845, 1113, 1538, 1592, 1869, 1965, 2397
BshVI ATCGAT 2 cut(s) 271, 2046
BsiEI CGRYCG 1 cut(s) 1593
BsiSI CCGG 2 cut(s) 464, 2516
BslFI GGGAC 3 cut(s) 390, 1429, 2035
BslI CCNNNNNNNGG 8 cut(s) 52, 695, 841, 862, 1413, 1856, 1878, 2404
BsmAI GTCTC 3 cut(s) 1347, 1777, 1976
BsmFI GGGAC 3 cut(s) 390, 1429, 2035
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 7 cut(s) 845, 1113, 1538, 1592, 1869, 1965, 2397
Bso31I GGTCTC 3 cut(s) 1347, 1777, 1976
Bsp120I GGGCCC 1 cut(s) 1111
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp19I CCATGG 1 cut(s) 142
Bsp68I TCGCGA 1 cut(s) 2481
BspACI CCGC 4 cut(s) 191, 842, 1589, 2262
BspANI GGCC 7 cut(s) 845, 1113, 1538, 1592, 1869, 1965, 2397
BspCNI CTCAG 3 cut(s) 350, 1266, 2042
BspDI ATCGAT 2 cut(s) 271, 2046
BspFNI CGCG 1 cut(s) 2481
BspHI TCATGA 2 cut(s) 391, 1297
BspLI GGNNCC 4 cut(s) 378, 1113, 1417, 1870
BspPI GGATC 5 cut(s) 100, 212, 706, 2006, 2261
BspQI GCTCTTC 2 cut(s) 1455, 1968
BspTI CTTAAG 2 cut(s) 763, 1990
BspTNI GGTCTC 3 cut(s) 1347, 1777, 1976
BsrDI GCAATG 1 cut(s) 1651
BsrI ACTGG 8 cut(s) 109, 775, 1315, 1539, 1546, 1602, 2199, 2586
BssECI CCNNGG 4 cut(s) 142, 803, 1777, 2398
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 142, 1777, 2398
Bst2UI CCWGG 5 cut(s) 750, 804, 1124, 1491, 2334
Bst4CI ACNGT 6 cut(s) 513, 898, 980, 1031, 2111, 2359
Bst6I CTCTTC 5 cut(s) 528, 1455, 1968, 2201, 2356
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 2 cut(s) 763, 1990
BstC8I GCNNGC 2 cut(s) 1518, 2406
BstDEI CTNAG 8 cut(s) 257, 290, 337, 743, 1169, 1274, 1334, 2029
BstDSI CCRYGG 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 2402
BstF5I GGATG 8 cut(s) 298, 742, 1040, 1067, 1622, 2024, 2236, 2436
BstFNI CGCG 1 cut(s) 2481
BstMAI GTCTC 3 cut(s) 1347, 1777, 1976
BstMCI CGRYCG 1 cut(s) 1593
BstMWI GCNNNNNNNGC 5 cut(s) 353, 1598, 1888, 2492, 2575
BstNI CCWGG 5 cut(s) 750, 804, 1124, 1491, 2334
BstNSI RCATGY 3 cut(s) 922, 2137, 2569
BstSCI CCNGG 6 cut(s) 463, 748, 802, 1122, 1489, 2332
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 1115
BstUI CGCG 1 cut(s) 2481
BstV1I GCAGC 3 cut(s) 1588, 1598, 2149
BstV2I GAAGAC 3 cut(s) 171, 1683, 2518
BstX2I RGATCY 4 cut(s) 92, 988, 1270, 2266
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 4 cut(s) 92, 988, 1270, 2266
BstZI CGGCCG 1 cut(s) 1590
Bsu15I ATCGAT 2 cut(s) 271, 2046
BsuI GTATCC 1 cut(s) 1792
BsuRI GGCC 7 cut(s) 845, 1113, 1538, 1592, 1869, 1965, 2397
BsuTUI ATCGAT 2 cut(s) 271, 2046
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 8 cut(s) 298, 742, 1040, 1067, 1622, 2024, 2236, 2436
BtsIMutI CAGTG 3 cut(s) 1353, 1532, 2072
BtuMI TCGCGA 1 cut(s) 2481
Cac8I GCNNGC 2 cut(s) 1518, 2406
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 2 cut(s) 391, 1297
Cfr13I GGNCC 6 cut(s) 377, 853, 1111, 1112, 1416, 1868
ClaI ATCGAT 2 cut(s) 271, 2046
CseI GACGC 1 cut(s) 626
Csp6I GTAC 6 cut(s) 112, 318, 768, 981, 1595, 1784
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviQI GTAC 6 cut(s) 112, 318, 768, 981, 1595, 1784
DdeI CTNAG 8 cut(s) 257, 290, 337, 743, 1169, 1274, 1334, 2029
DraI TTTAAA 1 cut(s) 2374
DraIII CACNNNGTG 1 cut(s) 881
DrdI GACNNNNNNGTC 1 cut(s) 919
DseDI GACNNNNNNGTC 1 cut(s) 919
EaeI YGGCCR 3 cut(s) 843, 1536, 1590
EagI CGGCCG 1 cut(s) 1590
Eam1104I CTCTTC 5 cut(s) 528, 1455, 1968, 2201, 2356
EarI CTCTTC 5 cut(s) 528, 1455, 1968, 2201, 2356
EclXI CGGCCG 1 cut(s) 1590
Eco130I CCWWGG 3 cut(s) 142, 1777, 2398
Eco24I GRGCYC 1 cut(s) 1115
Eco31I GGTCTC 3 cut(s) 1347, 1777, 1976
Eco32I GATATC 2 cut(s) 51, 2044
Eco47I GGWCC 3 cut(s) 377, 853, 1416
Eco52I CGGCCG 1 cut(s) 1590
Eco57I CTGAAG 6 cut(s) 729, 878, 1695, 1970, 2162, 2368
EcoNI CCTNNNNNAGG 1 cut(s) 2402
EcoO109I RGGNCCY 2 cut(s) 1111, 1112
EcoRII CCWGG 5 cut(s) 748, 802, 1122, 1489, 2332
EcoRV GATATC 2 cut(s) 51, 2044
EcoT14I CCWWGG 3 cut(s) 142, 1777, 2398
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 1115
ErhI CCWWGG 3 cut(s) 142, 1777, 2398
FalI AAGNNNNNCTT 8 cut(s) 440, 472, 1434, 1466, 1770, 1802, 1908, 1940
FaqI GGGAC 3 cut(s) 390, 1429, 2035
FauNDI CATATG 1 cut(s) 2272
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 5 cut(s) 843, 1587, 1590, 1602, 2138
FokI GGATG 8 cut(s) 285, 749, 1027, 1054, 1609, 2011, 2243, 2423
FriOI GRGCYC 1 cut(s) 1115
Fsp4HI GCNGC 5 cut(s) 843, 1587, 1590, 1602, 2138
FspBI CTAG 7 cut(s) 83, 558, 986, 1394, 1424, 2277, 2592
GluI GCNGC 5 cut(s) 843, 1587, 1590, 1602, 2138
GsaI CCCAGC 1 cut(s) 1860
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 7 cut(s) 845, 1113, 1538, 1592, 1869, 1965, 2397
HapII CCGG 2 cut(s) 464, 2516
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 15
HincII GTYRAC 3 cut(s) 13, 912, 1027
HindII GTYRAC 3 cut(s) 13, 912, 1027
HindIII AAGCTT 3 cut(s) 1221, 1307, 2297
HpaII CCGG 2 cut(s) 464, 2516
HphI GGTGA 9 cut(s) 10, 360, 539, 660, 800, 893, 1721, 1850, 2093
Hpy166II GTNNAC 6 cut(s) 13, 912, 950, 983, 1027, 1353
Hpy8I GTNNAC 6 cut(s) 13, 912, 950, 983, 1027, 1353
Hpy99I CGWCG 2 cut(s) 17, 1458
HpyAV CCTTC 6 cut(s) 59, 500, 1125, 1944, 2195, 2221
HpyCH4III ACNGT 6 cut(s) 513, 898, 980, 1031, 2111, 2359
HpyCH4IV ACGT 3 cut(s) 15, 283, 1129
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 1598, 1888, 2492, 2575
HpyF3I CTNAG 8 cut(s) 257, 290, 337, 743, 1169, 1274, 1334, 2029
HpySE526I ACGT 3 cut(s) 15, 283, 1129
Hsp92I GRCGYC 1 cut(s) 15
LguI GCTCTTC 2 cut(s) 1455, 1968
LmnI GCTCC 4 cut(s) 55, 119, 529, 1888
Lsp1109I GCAGC 3 cut(s) 1588, 1598, 2149
LweI GCATC 7 cut(s) 76, 178, 253, 373, 727, 1076, 2469
MaeI CTAG 7 cut(s) 83, 558, 986, 1394, 1424, 2277, 2592
MaeII ACGT 3 cut(s) 15, 283, 1129
MaeIII GTNAC 4 cut(s) 16, 241, 513, 638
MflI RGATCY 4 cut(s) 92, 988, 1270, 2266
MhlI GDGCHC 1 cut(s) 1115
MlsI TGGCCA 1 cut(s) 1538
MluNI TGGCCA 1 cut(s) 1538
MlyI GAGTC 3 cut(s) 684, 1699, 2218
MmeI TCCRAC 2 cut(s) 831, 2127
Mox20I TGGCCA 1 cut(s) 1538
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 5 cut(s) 1224, 1362, 1449, 1920, 2529
MscI TGGCCA 1 cut(s) 1538
MseI TTAA 6 cut(s) 764, 1661, 1719, 1991, 2315, 2373
MslI CAYNNNNRTG 3 cut(s) 396, 735, 1627
Msp20I TGGCCA 1 cut(s) 1538
MspA1I CMGCKG 5 cut(s) 305, 1589, 1856, 2140, 2262
MspCI CTTAAG 2 cut(s) 763, 1990
MspI CCGG 2 cut(s) 464, 2516
MspR9I CCNGG 6 cut(s) 465, 750, 804, 1124, 1491, 2334
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 5 cut(s) 750, 804, 1124, 1491, 2334
MvnI CGCG 1 cut(s) 2481
MwoI GCNNNNNNNGC 5 cut(s) 353, 1598, 1888, 2492, 2575
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 2272
NlaIV GGNNCC 4 cut(s) 378, 1113, 1417, 1870
NmuCI GTSAC 3 cut(s) 16, 513, 638
NruI TCGCGA 1 cut(s) 2481
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 3 cut(s) 922, 2137, 2569
PagI TCATGA 2 cut(s) 391, 1297
PciI ACATGT 1 cut(s) 918
PciSI GCTCTTC 2 cut(s) 1455, 1968
PcsI WCGNNNNNNNCGW 1 cut(s) 949
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 5 cut(s) 1224, 1362, 1449, 1920, 2529
PflMI CCANNNNNTGG 1 cut(s) 1856
PfoI TCCNGGA 1 cut(s) 748
PkrI GCNGC 5 cut(s) 844, 1588, 1591, 1603, 2139
PleI GAGTC 3 cut(s) 683, 1698, 2217
PpsI GAGTC 3 cut(s) 683, 1698, 2217
PscI ACATGT 1 cut(s) 918
PshBI ATTAAT 1 cut(s) 1719
PsiI TTATAA 1 cut(s) 2295
Psp6I CCWGG 5 cut(s) 748, 802, 1122, 1489, 2332
PspFI CCCAGC 1 cut(s) 1856
PspGI CCWGG 5 cut(s) 748, 802, 1122, 1489, 2332
PspN4I GGNNCC 4 cut(s) 378, 1113, 1417, 1870
PspOMI GGGCCC 1 cut(s) 1111
PspPI GGNCC 6 cut(s) 377, 853, 1111, 1112, 1416, 1868
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 4 cut(s) 92, 988, 1270, 2266
PvuII CAGCTG 3 cut(s) 305, 1856, 2140
RruI TCGCGA 1 cut(s) 2481
RsaI GTAC 6 cut(s) 113, 319, 769, 982, 1596, 1785
RsaNI GTAC 6 cut(s) 112, 318, 768, 981, 1595, 1784
RseI CAYNNNNRTG 3 cut(s) 396, 735, 1627
SalI GTCGAC 1 cut(s) 11
SapI GCTCTTC 2 cut(s) 1455, 1968
SaqAI TTAA 6 cut(s) 764, 1661, 1719, 1991, 2315, 2373
SatI GCNGC 5 cut(s) 843, 1587, 1590, 1602, 2138
Sau96I GGNCC 6 cut(s) 377, 853, 1111, 1112, 1416, 1868
ScaI AGTACT 1 cut(s) 769
SchI GAGTC 3 cut(s) 684, 1699, 2218
ScrFI CCNGG 6 cut(s) 465, 750, 804, 1124, 1491, 2334
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 7 cut(s) 76, 178, 253, 373, 727, 1076, 2469
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 3 cut(s) 377, 853, 1416
SmiMI CAYNNNNRTG 3 cut(s) 396, 735, 1627
SmlI CTYRAG 6 cut(s) 763, 1260, 1283, 1979, 1990, 2487
SmoI CTYRAG 6 cut(s) 763, 1260, 1283, 1979, 1990, 2487
SpeI ACTAGT 1 cut(s) 1423
SsiI CCGC 4 cut(s) 191, 842, 1589, 2262
SspI AATATT 1 cut(s) 1659
SspMI CTAG 7 cut(s) 83, 558, 986, 1394, 1424, 2277, 2592
StyD4I CCNGG 6 cut(s) 463, 748, 802, 1122, 1489, 2332
StyI CCWWGG 3 cut(s) 142, 1777, 2398
TaaI ACNGT 6 cut(s) 513, 898, 980, 1031, 2111, 2359
TaiI ACGT 3 cut(s) 18, 286, 1132
TaqI TCGA 6 cut(s) 12, 33, 271, 1366, 2046, 2212
TatI WGTACW 3 cut(s) 111, 317, 767
TauI GCSGC 2 cut(s) 845, 1592
Tru1I TTAA 6 cut(s) 764, 1661, 1719, 1991, 2315, 2373
Tru9I TTAA 6 cut(s) 764, 1661, 1719, 1991, 2315, 2373
TscAI CASTG 3 cut(s) 1360, 1539, 2072
TseFI GTSAC 3 cut(s) 16, 513, 638
TseI GCWGC 3 cut(s) 1586, 1601, 2137
Tsp45I GTSAC 3 cut(s) 16, 513, 638
TspRI CASTG 3 cut(s) 1360, 1539, 2072
Van91I CCANNNNNTGG 1 cut(s) 1856
Vha464I CTTAAG 2 cut(s) 763, 1990
VpaK11BI GGWCC 3 cut(s) 377, 853, 1416
VspI ATTAAT 1 cut(s) 1719
XagI CCTNNNNNAGG 1 cut(s) 2402
XapI RAATTY 8 cut(s) 211, 619, 823, 1164, 1293, 1763, 1843, 2180
XceI RCATGY 3 cut(s) 922, 2137, 2569
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 12
XmnI GAANNNNTTC 5 cut(s) 1224, 1362, 1449, 1920, 2529
XspI CTAG 7 cut(s) 83, 558, 986, 1394, 1424, 2277, 2592
ZraI GACGTC 1 cut(s) 16
ZrmI AGTACT 1 cut(s) 769
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.