Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005617

Physical Location & Seq

Genomic Coordinates Forward (+)

56509804 .. 56514831

Gene Structure 5028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGATGTTCCCTCTCCAGAACCACATAGCGACTCTCGAAGTGACCAATATCCTTTGCTACTAGAGCAGATGGAAAGCCCCAACAGTCATGTGCACGTAATTGACGTAACGAGGAATGATGATACCTCATCAAGTTCATCTAATGATGATCAACCTCCTAGAGTGGACTTGCCTCAGCATGAAGATAGACTGTCACGTATTACACATGCCCCCACTTATCAGGCTGCTTCAACTTCGTCAAACAGATTAAGTGCTAGGAGTTCATCATTTATGAGGCGGGGTGATGGGTATAGTCGCCACAGAAGAAGCCCATTGAATTCAGGACTGTGGATTTCTGTTGAACTTCTTGTCACTATGAGTCAGATAATAGCATCTATTGTTGTTTTGTCATTGTCGACAAATGAAAATCCGCAAGCCCCTTTGTTCGCATGGATTGTGGGTTATGCATCTGGCTGTGTTGCAACACTACCTATTCTTTACTGGAGATTCCGTAACCGCAACAGGGGTGCTGAGCTAGAATCCACTCAATCTCATCAAGGGTCTTCTGAACGCAATCCTCCTGAACCAACTTCTTATACAGCTATTTCAATTACTCCAGCTTCAGACGAAGAAAGAAATCACACTACAGAAACAGTCATGAGAAACCCTCAAGTTGCAGAACCCTCAAGTGCAAGACTTAATGGGTTGGTGGATCATTTCAAGATGGCATTAGATTGCTTCTTCGCAGTCTGGTTTGTTGTGGGAAATGTGTGGATTTTTGGAGGTCACTCTTCTCCCTCTGATGCTCCTAAATTGTATAGGTTATGCATAGTGTTCCTTACCTTTAGCTGTATCGGATATGCCATGCCATTCATACTGTGTGCAACAATTTGTTGCTGCCTGCCGTGCATCATCTCTGTCCTGGGATTCCGAGAGGACCATGCTCAGACTAGAGGAGCCACCACAGAGTCAATTAATGCTCTGCCAACCTACAAATTCAAGCTGAAGAGAAATGGTATGAATGATGATCAGGAGAGCAACACCTCTGGTGAAGGAGGACTCTTGGCTGCAGGGACAGAGAAGGAGCGTGCAATATCAGAAGAAGATGCGGTGAGTATGTTCGGGGCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

370

Amino Acids

40.86

Weight (kDa)

5.57

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80400
fragaria_vesca	FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890 FvH4_6g30890
malus_domestica	MD09G1215300.v1.1 MD17G1198000.v1.1
prunus_persica	Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1 Prupe.3G074400_v2.0.a1
pyrus_communis	pycom09g13210 pycom17g20290
rosa_chinensis	RchiOBHm_Chr2g0137381
rosa_laevigata	RLG00000019655
rosa_multiflora	Rmu_ssc0000312.1_g000015
rosa_roxburghii	Rroxscaffold_2G00107090
rosa_rugosa	Rorug02G0342000 Rorug02G0342100
rosa_samantha	Rh2AG390200 Rh2BG397600 Rh2CG377500 Rh2DG412900
rosa_wichuraiana	Rw2G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	4 cut(s)	277, 410, 496, 1088
AclWI	GGATC	1 cut(s)	699
AcsI	RAATTY	2 cut(s)	316, 974
AcuI	CTGAAG	2 cut(s)	585, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	6 cut(s)	231, 316, 341, 588, 700, 979
AjnI	CCWGG	1 cut(s)	900
AluBI	AGCT	5 cut(s)	514, 581, 599, 828, 982
AluI	AGCT	5 cut(s)	514, 581, 599, 828, 982
Alw21I	GWGCWC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	699
AoxI	GGCC	1 cut(s)	1104
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	224, 876, 1046
ApoI	RAATTY	2 cut(s)	316, 974
AseI	ATTAAT	1 cut(s)	954
AspS9I	GGNCC	2 cut(s)	916, 1104
AsuHPI	GGTGA	3 cut(s)	293, 1040, 1102
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	211, 863, 1033
BccI	CCATC	3 cut(s)	64, 278, 697
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	1 cut(s)	902
BclI	TGATCA	2 cut(s)	148, 1006
BfaI	CTAG	5 cut(s)	62, 159, 255, 515, 930
BfmI	CTRYAG	2 cut(s)	624, 1047
BisI	GCNGC	3 cut(s)	225, 877, 1047
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	226, 878, 1048
Bme1390I	CCNGG	1 cut(s)	902
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	2 cut(s)	916, 1104
BmiI	GGNNCC	2 cut(s)	937, 1105
BmrFI	CCNGG	1 cut(s)	902
BmsI	GCATC	5 cut(s)	380, 455, 772, 897, 1075
BpiI	GAAGAC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	631, 663
BpmI	CTGGAG	2 cut(s)	502, 579
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	633, 649
BsaAI	YACGTR	2 cut(s)	97, 197
BsaJI	CCNNGG	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	901
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	188, 501, 938
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	948
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	211, 863, 1033
BshFI	GGCC	1 cut(s)	1106
BsiHKAI	GWGCWC	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	1066
BsnI	GGCC	1 cut(s)	1106
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	148, 691, 1006
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	4 cut(s)	277, 410, 496, 1088
BspANI	GGCC	1 cut(s)	1106
BspCNI	CTCAG	3 cut(s)	187, 502, 937
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	937, 1105
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	901
BssMI	GATC	3 cut(s)	148, 691, 1006
Bst2UI	CCWGG	1 cut(s)	902
Bst4CI	ACNGT	5 cut(s)	86, 192, 327, 634, 858
Bst6I	CTCTTC	2 cut(s)	775, 980
BstBAI	YACGTR	2 cut(s)	97, 197
BstC8I	GCNNGC	3 cut(s)	414, 881, 1068
BstDEI	CTNAG	3 cut(s)	174, 510, 924
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	151, 694, 1009
BstMBI	GATC	3 cut(s)	148, 691, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 885
BstNI	CCWGG	1 cut(s)	902
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	900
BstSFI	CTRYAG	2 cut(s)	624, 1047
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	211, 863, 1033
BstV2I	GAAGAC	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	1106
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	414, 881, 1068
CciI	TCATGA	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	916, 1104
CviAII	CATG	7 cut(s)	89, 179, 206, 429, 637, 844, 920
DdeI	CTNAG	3 cut(s)	174, 510, 924
DpnI	GATC	3 cut(s)	150, 693, 1008
DpnII	GATC	3 cut(s)	148, 691, 1006
Eam1104I	CTCTTC	2 cut(s)	775, 980
EarI	CTCTTC	2 cut(s)	775, 980
Eco47I	GGWCC	1 cut(s)	916
Eco57I	CTGAAG	2 cut(s)	585, 1004
EcoO109I	RGGNCCY	1 cut(s)	1104
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	900
EcoT22I	ATGCAT	2 cut(s)	448, 809
FaeI	CATG	7 cut(s)	92, 182, 209, 432, 640, 847, 923
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	7 cut(s)	88, 178, 205, 428, 636, 843, 919
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	2 cut(s)	148, 1006
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	3 cut(s)	225, 877, 1047
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	225, 877, 1047
FspBI	CTAG	5 cut(s)	62, 159, 255, 515, 930
GluI	GCNGC	3 cut(s)	225, 877, 1047
GsuI	CTGGAG	2 cut(s)	502, 579
HaeIII	GGCC	1 cut(s)	1106
Hin1II	CATG	7 cut(s)	92, 182, 209, 432, 640, 847, 923
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	7 cut(s)	32, 358, 486, 518, 906, 947, 1038
HphI	GGTGA	3 cut(s)	293, 1040, 1102
Hpy166II	GTNNAC	3 cut(s)	94, 166, 396
Hpy188I	TCNGA	9 cut(s)	363, 547, 604, 781, 836, 911, 927, 1078, 1112
Hpy188III	TCNNGA	7 cut(s)	17, 36, 321, 560, 637, 700, 1010
Hpy8I	GTNNAC	3 cut(s)	94, 166, 396
HpyAV	CCTTC	2 cut(s)	1025, 1054
HpyCH4III	ACNGT	5 cut(s)	86, 192, 327, 634, 858
HpyCH4IV	ACGT	3 cut(s)	96, 105, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 885
HpyF3I	CTNAG	3 cut(s)	174, 510, 924
HpySE526I	ACGT	3 cut(s)	96, 105, 196
Hsp92II	CATG	7 cut(s)	92, 182, 209, 432, 640, 847, 923
Ksp22I	TGATCA	2 cut(s)	148, 1006
Kzo9I	GATC	3 cut(s)	148, 691, 1006
LmnI	GCTCC	3 cut(s)	790, 935, 1063
Lsp1109I	GCAGC	3 cut(s)	211, 863, 1033
LweI	GCATC	5 cut(s)	380, 455, 772, 897, 1075
MaeI	CTAG	5 cut(s)	62, 159, 255, 515, 930
MaeII	ACGT	3 cut(s)	96, 105, 196
MaeIII	GTNAC	6 cut(s)	41, 106, 192, 349, 491, 764
MalI	GATC	3 cut(s)	150, 693, 1008
MboI	GATC	3 cut(s)	148, 691, 1006
MboII	GAAGA	9 cut(s)	194, 315, 534, 620, 712, 762, 997, 1091, 1094
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	7 cut(s)	99, 316, 588, 791, 867, 951, 974
MlyI	GAGTC	4 cut(s)	26, 367, 956, 1032
Mph1103I	ATGCAT	2 cut(s)	448, 809
MseI	TTAA	3 cut(s)	248, 678, 954
MspR9I	CCNGG	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	902
MwoI	GCNNNNNNNGC	2 cut(s)	64, 885
NdeII	GATC	3 cut(s)	148, 691, 1006
NlaIII	CATG	7 cut(s)	92, 182, 209, 432, 640, 847, 923
NlaIV	GGNNCC	2 cut(s)	937, 1105
NmuCI	GTSAC	4 cut(s)	41, 192, 349, 764
NsiI	ATGCAT	2 cut(s)	448, 809
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	486, 518, 906
PkrI	GCNGC	3 cut(s)	226, 878, 1048
PleI	GAGTC	4 cut(s)	26, 366, 955, 1032
PpsI	GAGTC	4 cut(s)	26, 366, 955, 1032
Ppu21I	YACGTR	2 cut(s)	97, 197
PshBI	ATTAAT	1 cut(s)	954
Psp6I	CCWGG	1 cut(s)	900
PspGI	CCWGG	1 cut(s)	900
PspN4I	GGNNCC	2 cut(s)	937, 1105
PspPI	GGNCC	2 cut(s)	916, 1104
PstI	CTGCAG	1 cut(s)	1051
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	248, 678, 954
SatI	GCNGC	3 cut(s)	225, 877, 1047
Sau3AI	GATC	3 cut(s)	148, 691, 1006
Sau96I	GGNCC	2 cut(s)	916, 1104
SchI	GAGTC	4 cut(s)	26, 367, 956, 1032
ScrFI	CCNGG	1 cut(s)	902
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	5 cut(s)	380, 455, 772, 897, 1075
SfcI	CTRYAG	2 cut(s)	624, 1047
SinI	GGWCC	1 cut(s)	916
SmlI	CTYRAG	2 cut(s)	648, 664
SmoI	CTYRAG	2 cut(s)	648, 664
Sse9I	AATT	7 cut(s)	99, 316, 588, 791, 867, 951, 974
SsiI	CCGC	4 cut(s)	277, 410, 496, 1088
SspMI	CTAG	5 cut(s)	62, 159, 255, 515, 930
StyD4I	CCNGG	1 cut(s)	900
TaaI	ACNGT	5 cut(s)	86, 192, 327, 634, 858
TaiI	ACGT	3 cut(s)	99, 108, 199
TaqI	TCGA	2 cut(s)	37, 395
TasI	AATT	7 cut(s)	99, 316, 588, 791, 867, 951, 974
TfiI	GAWTC	3 cut(s)	486, 518, 906
Tru1I	TTAA	3 cut(s)	248, 678, 954
Tru9I	TTAA	3 cut(s)	248, 678, 954
TseFI	GTSAC	4 cut(s)	41, 192, 349, 764
TseI	GCWGC	3 cut(s)	224, 876, 1046
Tsp45I	GTSAC	4 cut(s)	41, 192, 349, 764
TspDTI	ATGAA	6 cut(s)	126, 195, 252, 417, 841, 1013
TspGWI	ACGGA	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	916
VspI	ATTAAT	1 cut(s)	954
XapI	RAATTY	2 cut(s)	316, 974
XceI	RCATGY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	5 cut(s)	62, 159, 255, 515, 930
Zsp2I	ATGCAT	2 cut(s)	448, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.