MD17G1198000.v1.1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005617
Physical Location & Seq
Reverse (-)
23735725 .. 23739850
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1198000.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGATGTTCCCTCTGCAGAACCAAATAGTGACACCCAAGGTGACCAATTTCCTTTGCTACTAGAGCAGATGGAAAGTCATAACAATCGTGTGCACATAATTGATGTAACAAGGAATGATGATGCTTCATCAAGTACATCCAGTGATGACCAACCTCCTAGAGTGGACATGCCCCATCATGAAGACAGATCATCAGCAAGTACACATGCCCCCTCTTATCAAGCTGCTTCATCTTCCTCAAACAGATTGAATTCTAGGAATTCCTCATTTATGAGGAGAGGTGATGGGTATAGTCGTCGCCGAAGAAGCCCTTTAAATTCAGGGTTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATTATAGCATCTATTGTTGTTTTGTCACTGTCAACAAATGAAAATCCACAAGCGCCTTTGTTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCAACACTTCCTGTTCTTTACTGGAGGTTCCGTAACCGCAACAGGGGTTCTGAGCAAGAATCCATTCAATCGCATCAAGGGTCTTCTGAAAGCAGTCCTCCTGAACCAACGTCTTATACAGCTATTTCAATTACACAAGCTTCAGATGAAGAGAACAGTCGCGCCTCCGAAACGGTTACAACTAACCCTCAAATTGGAGGACCCTTAAGTGCAAGAATAAATGGGTTAGTGGATCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTCTGGTTTGTTGTAGGCAATGTGTGGATTTTTGGAGGTCACTCTGCCCCTTCTGATGCTCCTAAACTGTACAGGTTATGTATAGTGTTCCTTACCTTTAGCTGTATTGGATATGCCATGCCATTCATACTATGTGCAACAATTTGCTGCTGCCTGCCTTGCATCATTTCTGTCCTCGGATTTCGAGAGGATCTTTCTCAGGCTAGAGGAGCCACCGTGGAATCAATTAATGCTCTCCCGACATACAAATTCAAGTTAAAGGAAAATGTGACCAATGATGATCAGGAGGGAAGCCCAGGTAGTCAAGGTGGGCTCTTGGCTGCAGGGACAGAAAAGGAGCGTGAGATATCTGGAGATGATGCGGTTTGTTGTATTTGCTTGGCGAAGTATGCAGATAACGATGAGCTACGGGAGCTACCATGTTTACATGTCTTTCACGTGGAGTGTGTTGACAAATGGTTGAAAATCAATGCATCATGTCCCCTATGCAAAAGTGAGGTCGGAGAGAGGAGCGGTGGCTCGCCATTGGCCAGGGACTCCAGCCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

426

Amino Acids

46.38

Weight (kDa)

5.2

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 365 - 406 1.2e-13 Ring finger domain
zf-RING_11 PF17123 365 - 392 1.4e-08 RING-like zinc finger
zf-rbx1 PF12678 365 - 406 9.6e-07 RING-H2 zinc finger domain
zf-C3HC4 PF00097 365 - 405 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 365 - 405 4.1e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1239
AccII CGCG 1 cut(s) 621
AciI CCGC 3 cut(s) 496, 1088, 1239
AclWI GGATC 2 cut(s) 699, 924
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 4 cut(s) 250, 259, 316, 974
AcuI CTGAAG 1 cut(s) 585
AcvI CACGTG 1 cut(s) 1165
AfaI GTAC 3 cut(s) 136, 202, 797
AfiI CCNNNNNNNGG 2 cut(s) 502, 653
AflII CTTAAG 1 cut(s) 664
AflIII ACRYGT 1 cut(s) 1153
AgsI TTSAA 6 cut(s) 250, 527, 588, 700, 979, 1189
AjnI CCWGG 2 cut(s) 1021, 1256
AluBI AGCT 7 cut(s) 224, 343, 581, 599, 828, 1132, 1141
AluI AGCT 7 cut(s) 224, 343, 581, 599, 828, 1132, 1141
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 2 cut(s) 699, 924
AoxI GGCC 2 cut(s) 705, 1254
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 4 cut(s) 224, 873, 876, 1046
ApoI RAATTY 4 cut(s) 250, 259, 316, 974
ArsI GACNNNNNNTTYG 2 cut(s) 1209, 1241
AseI ATTAAT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 418, 623
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 53, 293
AvaII GGWCC 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 1256
BanII GRGCYC 1 cut(s) 1041
BbrPI CACGTG 1 cut(s) 1165
BbsI GAAGAC 2 cut(s) 189, 534
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 211, 860, 863, 1033
BccI CCATC 4 cut(s) 64, 183, 278, 697
BciT130I CCWGG 2 cut(s) 1023, 1258
BclI TGATCA 1 cut(s) 1006
BfaI CTAG 4 cut(s) 62, 159, 255, 930
BfmI CTRYAG 2 cut(s) 15, 1047
BfoI RGCGCY 1 cut(s) 419
BfrI CTTAAG 1 cut(s) 664
BisI GCNGC 4 cut(s) 225, 874, 877, 1047
BlsI GCNGC 4 cut(s) 226, 875, 878, 1048
Bme1390I CCNGG 2 cut(s) 1023, 1258
Bme18I GGWCC 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 3 cut(s) 488, 661, 937
BmrFI CCNGG 2 cut(s) 1023, 1258
BmsI GCATC 8 cut(s) 112, 380, 455, 541, 772, 897, 1075, 1208
BpiI GAAGAC 2 cut(s) 189, 534
BpmI CTGGAG 3 cut(s) 502, 1098, 1249
BsaAI YACGTR 1 cut(s) 1165
BsaJI CCNNGG 5 cut(s) 37, 901, 942, 1021, 1257
BsaXI ACNNNNNCTCC 4 cut(s) 475, 505, 927, 957
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 653
Bse1I ACTGG 2 cut(s) 141, 485
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 2 cut(s) 1023, 1258
BseDI CCNNGG 5 cut(s) 37, 901, 942, 1021, 1257
BseGI GGATG 2 cut(s) 10, 137
BseLI CCNNNNNNNGG 2 cut(s) 502, 653
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 2 cut(s) 501, 938
BseNI ACTGG 2 cut(s) 141, 485
BseRI GAGGAG 3 cut(s) 289, 948, 1249
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 4 cut(s) 211, 860, 863, 1033
Bsh1236I CGCG 1 cut(s) 621
BshFI GGCC 2 cut(s) 707, 1256
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 3 cut(s) 1066, 1191, 1274
BslI CCNNNNNNNGG 2 cut(s) 502, 653
BsmFI GGGAC 3 cut(s) 1066, 1191, 1274
BsnI GGCC 2 cut(s) 707, 1256
Bsp1286I GDGCHC 2 cut(s) 96, 1041
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 4 cut(s) 188, 691, 916, 1006
BspACI CCGC 3 cut(s) 496, 1088, 1239
BspANI GGCC 2 cut(s) 707, 1256
BspCNI CTCAG 2 cut(s) 502, 937
BspFNI CGCG 1 cut(s) 621
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 488, 661, 937
BspMAI CTGCAG 2 cut(s) 19, 1051
BspPI GGATC 2 cut(s) 699, 924
BspTI CTTAAG 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 1239
BsrDI GCAATG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 795
BsrI ACTGG 2 cut(s) 141, 485
BssECI CCNNGG 5 cut(s) 37, 901, 942, 1021, 1257
BssMI GATC 4 cut(s) 188, 691, 916, 1006
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 2 cut(s) 1023, 1258
Bst4CI ACNGT 7 cut(s) 355, 393, 617, 634, 795, 943, 1275
Bst6I CTCTTC 1 cut(s) 603
BstAFI CTTAAG 1 cut(s) 664
BstAUI TGTACA 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 1165
BstC8I GCNNGC 2 cut(s) 881, 1247
BstDEI CTNAG 3 cut(s) 510, 709, 924
BstDSI CCRYGG 1 cut(s) 942
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 2 cut(s) 10, 137
BstFNI CGCG 1 cut(s) 621
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 2 cut(s) 418, 623
BstKTI GATC 4 cut(s) 191, 694, 919, 1009
BstMBI GATC 4 cut(s) 188, 691, 916, 1006
BstMWI GCNNNNNNNGC 6 cut(s) 64, 306, 885, 935, 1115, 1138
BstNI CCWGG 2 cut(s) 1023, 1258
BstNSI RCATGY 3 cut(s) 172, 209, 1157
BstPI GGTNACC 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 1021, 1256
BstSFI CTRYAG 2 cut(s) 15, 1047
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 4 cut(s) 211, 860, 863, 1033
BstV2I GAAGAC 2 cut(s) 189, 534
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
BsuRI GGCC 2 cut(s) 707, 1256
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 2 cut(s) 10, 137
BtsIMutI CAGTG 3 cut(s) 148, 351, 389
Cac8I GCNNGC 2 cut(s) 881, 1247
CciI TCATGA 1 cut(s) 178
CfoI GCGC 2 cut(s) 418, 623
Cfr13I GGNCC 1 cut(s) 659
Csp6I GTAC 3 cut(s) 135, 201, 796
CviAII CATG 8 cut(s) 169, 179, 206, 429, 844, 1146, 1154, 1203
CviQI GTAC 3 cut(s) 135, 201, 796
DdeI CTNAG 3 cut(s) 510, 709, 924
DpnI GATC 4 cut(s) 190, 693, 918, 1008
DpnII GATC 4 cut(s) 188, 691, 916, 1006
DraI TTTAAA 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 1041
Eco32I GATATC 1 cut(s) 1074
Eco47I GGWCC 1 cut(s) 659
Eco57I CTGAAG 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 1165
Eco91I GGTNACC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 41
EcoRI GAATTC 2 cut(s) 250, 259
EcoRII CCWGG 2 cut(s) 1021, 1256
EcoRV GATATC 1 cut(s) 1074
EcoT14I CCWWGG 1 cut(s) 37
EcoT22I ATGCAT 2 cut(s) 448, 1201
EcoT38I GRGCYC 1 cut(s) 1041
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 8 cut(s) 172, 182, 209, 432, 847, 1149, 1157, 1206
FalI AAGNNNNNCTT 4 cut(s) 295, 327, 692, 724
FaqI GGGAC 3 cut(s) 1066, 1191, 1274
FatI CATG 8 cut(s) 168, 178, 205, 428, 843, 1145, 1153, 1202
FbaI TGATCA 1 cut(s) 1006
Fnu4HI GCNGC 4 cut(s) 225, 874, 877, 1047
FokI GGATG 2 cut(s) 17, 124
FriOI GRGCYC 1 cut(s) 1041
Fsp4HI GCNGC 4 cut(s) 225, 874, 877, 1047
FspBI CTAG 4 cut(s) 62, 159, 255, 930
GlaI GCGC 2 cut(s) 417, 622
GluI GCNGC 4 cut(s) 225, 874, 877, 1047
GsuI CTGGAG 3 cut(s) 502, 1098, 1249
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 2 cut(s) 707, 1256
HhaI GCGC 2 cut(s) 418, 623
Hin1II CATG 8 cut(s) 172, 182, 209, 432, 847, 1149, 1157, 1206
Hin6I GCGC 2 cut(s) 416, 621
HinP1I GCGC 2 cut(s) 416, 621
HincII GTYRAC 2 cut(s) 396, 1177
HindII GTYRAC 2 cut(s) 396, 1177
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 4 cut(s) 358, 518, 947, 1262
HphI GGTGA 2 cut(s) 53, 293
Hpy166II GTNNAC 6 cut(s) 94, 166, 203, 396, 1151, 1177
Hpy188I TCNGA 8 cut(s) 363, 511, 547, 604, 628, 781, 905, 1229
Hpy188III TCNNGA 7 cut(s) 179, 560, 700, 911, 964, 1010, 1077
Hpy8I GTNNAC 6 cut(s) 94, 166, 203, 396, 1151, 1177
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 786
HpyCH4III ACNGT 7 cut(s) 355, 393, 617, 634, 795, 943, 1275
HpyCH4IV ACGT 2 cut(s) 569, 1164
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 306, 885, 935, 1115, 1138
HpyF3I CTNAG 3 cut(s) 510, 709, 924
HpySE526I ACGT 2 cut(s) 569, 1164
Hsp92II CATG 8 cut(s) 172, 182, 209, 432, 847, 1149, 1157, 1206
HspAI GCGC 2 cut(s) 416, 621
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 4 cut(s) 188, 691, 916, 1006
LmnI GCTCC 5 cut(s) 790, 935, 1063, 1138, 1236
Lsp1109I GCAGC 4 cut(s) 211, 860, 863, 1033
LweI GCATC 8 cut(s) 112, 380, 455, 541, 772, 897, 1075, 1208
MaeI CTAG 4 cut(s) 62, 159, 255, 930
MaeII ACGT 2 cut(s) 569, 1164
MaeIII GTNAC 9 cut(s) 29, 41, 106, 349, 387, 491, 634, 764, 994
MalI GATC 4 cut(s) 190, 693, 918, 1008
MbiI CCGCTC 1 cut(s) 1239
MboI GATC 4 cut(s) 188, 691, 916, 1006
MboII GAAGA 5 cut(s) 194, 225, 315, 534, 620
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 96, 1041
MlsI TGGCCA 1 cut(s) 1256
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 2 cut(s) 367, 1256
MmeI TCCRAC 1 cut(s) 1207
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 2 cut(s) 448, 1201
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 4 cut(s) 314, 665, 954, 983
Msp20I TGGCCA 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 664
MspR9I CCNGG 2 cut(s) 1023, 1258
MvaI CCWGG 2 cut(s) 1023, 1258
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 6 cut(s) 64, 306, 885, 935, 1115, 1138
NdeII GATC 4 cut(s) 188, 691, 916, 1006
NlaIII CATG 8 cut(s) 172, 182, 209, 432, 847, 1149, 1157, 1206
NlaIV GGNNCC 3 cut(s) 488, 661, 937
NmuCI GTSAC 6 cut(s) 29, 41, 349, 387, 764, 994
NsiI ATGCAT 2 cut(s) 448, 1201
NspI RCATGY 3 cut(s) 172, 209, 1157
PagI TCATGA 1 cut(s) 178
PciI ACATGT 1 cut(s) 1153
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 518, 947
PkrI GCNGC 4 cut(s) 226, 875, 878, 1048
PleI GAGTC 2 cut(s) 366, 1256
PmaCI CACGTG 1 cut(s) 1165
PmlI CACGTG 1 cut(s) 1165
PpsI GAGTC 2 cut(s) 366, 1256
Ppu21I YACGTR 1 cut(s) 1165
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 1153
PshBI ATTAAT 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 1021, 1256
PspCI CACGTG 1 cut(s) 1165
PspEI GGTNACC 1 cut(s) 41
PspGI CCWGG 2 cut(s) 1021, 1256
PspN4I GGNNCC 3 cut(s) 488, 661, 937
PspPI GGNCC 1 cut(s) 659
PspPPI RGGWCCY 1 cut(s) 659
PstI CTGCAG 2 cut(s) 19, 1051
PsuI RGATCY 1 cut(s) 916
RsaI GTAC 3 cut(s) 136, 202, 797
RsaNI GTAC 3 cut(s) 135, 201, 796
SaqAI TTAA 4 cut(s) 314, 665, 954, 983
SatI GCNGC 4 cut(s) 225, 874, 877, 1047
Sau3AI GATC 4 cut(s) 188, 691, 916, 1006
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 2 cut(s) 367, 1256
ScrFI CCNGG 2 cut(s) 1023, 1258
SduI GDGCHC 2 cut(s) 96, 1041
SfaNI GCATC 8 cut(s) 112, 380, 455, 541, 772, 897, 1075, 1208
SfcI CTRYAG 2 cut(s) 15, 1047
SinI GGWCC 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SsiI CCGC 3 cut(s) 496, 1088, 1239
SspMI CTAG 4 cut(s) 62, 159, 255, 930
StyD4I CCNGG 2 cut(s) 1021, 1256
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 7 cut(s) 355, 393, 617, 634, 795, 943, 1275
TaiI ACGT 2 cut(s) 572, 1167
TaqI TCGA 1 cut(s) 910
TatI WGTACW 3 cut(s) 134, 200, 795
TfiI GAWTC 2 cut(s) 518, 947
Tru1I TTAA 4 cut(s) 314, 665, 954, 983
Tru9I TTAA 4 cut(s) 314, 665, 954, 983
TscAI CASTG 3 cut(s) 148, 358, 396
TseFI GTSAC 6 cut(s) 29, 41, 349, 387, 764, 994
TseI GCWGC 4 cut(s) 224, 873, 876, 1046
Tsp45I GTSAC 6 cut(s) 29, 41, 349, 387, 764, 994
TspDTI ATGAA 6 cut(s) 117, 195, 219, 417, 621, 841
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 3 cut(s) 148, 358, 396
Vha464I CTTAAG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 659
VspI ATTAAT 1 cut(s) 954
XapI RAATTY 4 cut(s) 250, 259, 316, 974
XceI RCATGY 3 cut(s) 172, 209, 1157
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 4 cut(s) 62, 159, 255, 930
Zsp2I ATGCAT 2 cut(s) 448, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.