Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

28582106 .. 28592506

Gene Structure 10401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36320.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5163 bp

ATGAATGCACAGGCACATATGTCGGGACAAATATCTGGGCAGGTGCCCAATCAGGCAGGTTCTCAGTTGCCTGTGCTTCCCCAACATAACGGAAATGTTCCTTCCCAAATGCAAAATGTAGGGGGGCCTCCTCGTGCCATGTCCAGTATGGACCCCGAGCTCATCAGAGCACGTCAATTTATGCAAGAGAAGATCTGCCATGTTATACAGCAGCGACCACTTCCCCAGCTGATGAATGAAAAGAAGTTCAGGGATATTGTCAAACGCTTGGAGGAGGGTTTGTTGAGATCAGCTGTCACCAAGGAGGATTATATGAACTTGGACACGTTAGAGAGCCGTTTGCATAATTTGATCAAGCGTCCTACTCAGACCAATCAGAGCCAACAGTATCCACAGCTTGTTAATTCTTCTTCTCCTGTTGGCACGATGATACCGACTCCTGGCATGTCACACAGTGGGAACTCAAATATGATGGCTAATTCTTCCGTGGATGCTTCTATGAATACGACTGGTGGAACTACTAGCATGTCGGCCACACCAGTCAGCACAGGAAACATGTTGCCAGGTGGTGGCTTACATGGTTCGTTCAGTAGAGCTGACGGTTCTATGTCTAACGGATATCAGCAGTCTCCTGGCAATTTCTCCATTGGCTCTGGAGGAAACATGTCGTCAATGGGTTCACAAAGAATTGCAAGCCAAATGATTCCTACTCCTGGGTTTAACAACAATACAAATCAGTCTTACATGAATTTGGAATCCTCTAATAATAGTGGTGGTGGGTTCTCTACTGTTGATACTTCAATGCTAACGCAACCACAACAGCAAAAACAGCATATTGGCGGTCAAAATAGTCGTATGCTTCATAACCTTGGCAGCCAAGGGACAAGTGGAATGAGGTCTGGCTTGCAGCAGAAATCATATGGGGTGTCAAATGGGGCTATAAATGGTGGAATGGGAACAATCGCAAACAATCTACCAATTGTTAACGAAACTGGCATTTCAGATAGCTATCTGAACTCCTCAGCTTATGCCAATTCTTCCAAGCCCTTACAGCAACACTTTGATCCGCATCAGCGGCCTGTAATGCAAGGTGATGGCTACGGCATAAACAATGCTGATTCTTTTGGGTCTGGAAATTACTACGGTGGAGCAGCTTCTGTTGGGTCAGTGATGAATCCTCAAAATTTGAATTCAGTCAGCATGACACCTGTATCCAAGACCAGCTCTCCACTTATAAGTAATCAGTCCAATATGCATAGTCAACAACAAAGTGTCCACGTGAAGCCTCAACAAATTGATCAATTGGATAAGATGAGTTTCCAAAATTCTTCAAGAGACGGTATGCTTCAATCTCATCAGCACCAGCAATTTCAGCAGCAACCCAGTCAATTTCAACAGCAGCAGCAATTAGCTCACCATCAACGACAACAGAAGCAGCAAAATCAGCAAGCCCAGCATTTGTCAAGTACTGATGCTTTTGTTCAGTCTCCAATGATATCTGACCTAAGCAGTCAAGCAAAGCGTGATAATGAAGTTATGCACTCACAAACAGATCAGTTCCAAATGTCAGAGATGCAGAATCAATACCATCAGCAGTCTGCTGAAGATCGCTTGAGGAATGCTCAGCATAACTCATCTGGTCAGCATGATCTCTCCTCGTCGTTGGCCCAAACGTCTCAGCAAATGCAGCAAATGTTGCATCCTCACCAATTGATTGCAGAGACTCGAAATGATTTCAGTTCTCTTTCTGTTGGAGCTCAATCAGAACCAGCACTTCAGGGTCAATGGCGTTCTCAATTGCAAGATGGGAGTCAGAGGCAGGTTCATATGTCACAAGAGCATCATGTCCAAGAAGATTTCCGTCAGAGATTATCTAGGCAAGATGAAGCTCAGTGTAATAATCTTTCTTCGGAAGGACCTAATATTGGCCAAACTGTTGCTTCGAGAAGCACATCTAATCCCGAAATTCATGAGCGGTTCAGAAATCAACAGAAATGGCTTTTGTTCTTGCGCCATGCTCGTAAATGTCCATCTCCTGAAGGGAAATGTAAAGAATTTCATTGTTTAGCAGCTCAAAGATTGTTGAAGCATATTGGAAGATGCCATGATGAGCAATGCCCTATTCCTCAATGTCCTCGCACCAAAAAGCTGGTTCGTCATCACAGGAGTTGCTTGGATTCAGCTTGCCCGGTTTGTGTTCCTGTCAAGAATTATATTCAGACACATAATAAGGTGCCGATCCAATTTCCTGAATCTGGTGTCCAGAAATCAATAAATGGATCTTCTAAAGCCTATGATAGCGTCGACACTTCTGCTAGATTGATGACTAAGACGCTTCCAGTTGTTGAGACTTCTGAAGATCCGCAACCATCTATGAAACGCTTGAAGATAGAGCAGTCCTCTCAACCTATTGTTCCTGATTCTGTAAGTAATGCAGTAACAGTTTCTGCAAATAATGAACCCCATGTATCCCAGGATATACAGATTCAGGATTTCCAACATAGTGAAATTTCTATGCCAATCAAATCTGAGTTTACCGAAGTGAAAATGGAAGCTCCTTTAAGTTCCGGACAAGGGAATCTTGATGAGATGAAGGATAGTTTTGAGGAGAACTGCAATCAGAGGCAGGATGGTGTGCCTGCCCCTTATAATGAGCCTGCTGGTTTAGCTAAGCAAGGAAGCGTTAAACTTGAGAAAGAATCTCATCCAGCTAAAGAAGAAAACGCTATGCAGACTGCGGAAAATCCAGCTGGAACCAAGTCTGGGAAGCCTAAAATAAAGGGCGTGTCGTTGACTGAATTGTTTACTCCGGAGCAAGTCAGGGCCCATATTACGGGTCTCAGACAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAACCAAGCAATGGAGCATGCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAGCTTACTTTTGAACCACCACCCATGTATTGCACACCTTGTGGTGCTCGAATAAAGCGCAATTCTATGTATTATACAATGGGGGCCGGTGACACACGGCATTATTTCTGTATTCCATGCTATAATGAGGCTCGTGGAGATACAATAGTTGTTGATGGGACTCCCATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGACGAGGAAACAGAAGAATGGTGGGTCCAATGTGACAAATGTGAAGCTTGGCAACATCAAATCTGTGCTCTGTTCAATGGCCGAAGAAATGACGGTGGGCAAGCTGAGTACACTTGCCCTAATTGCTATATACAAGAGGTTGAAAGGGGAGAGCGTAAGCCATTACCACAGAGTGCTGTTTTGGGGGCCAAAGACTTACCGAGGACAATACTCAGTGACCACATAGAGCAACGCCTATTTAAGAAACTAAAGGTGGAAAGACAAGAGAGGGCAAGACAGCAGGGGAAAAGTTATGATGAGGTTCCTGGAGCAGAATCACTTGTTGTTAGAGTTGTTTCATCTGTCGACAAAAAATTGGAAGTGAAGCAGCGGTTTTTAGAAATATTCCAAGAAGACAATTATCCTACAGAATTCCCATATAAATCCAAGGTTGTACTACTGTTCCAGAAAATTGAAGGTGTAGAAGTATGCTTATTCGGCATGTATGTTCAAGAATTTGGAGCTGAATGTCAATTTCCAAATCAGCGCCGTGTTTATCTATCGTATTTGGATTCCGTTAAGTATTTCAGGCCTGAGGTTAAGGCGGTTACTGGAGAAGCTCTCCGTACATTTGTTTACCATGAAATTCTAATTGGATACCTCGAATATTGCAAACTACGTGGGTTTACAAGCTGCTACATTTGGGCATGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATCCAGAAAACACCGAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCTTCTAAAGAAAGCATTGTAGTTGAGCTCACTAATTTATACGATCATTTCTTTGTAAGTAATGGGGAAGGAAAGGCTAAGGTCACTGCAGCTAGGTTGCCCTACTTTGATGGTGACTATTGGCCCGGTGCTGCAGAGGATCTCATTTTCCAAATGCGTCAAGATGAGGATGGGAGAAAACAGAATAAAAAGGGATCAACCAAGAAGACTATAACAAAAAGGGCTCTAAAAGCATCTGGGCAGACTGATCTCTCTGGTAACGCGTCAAAGGACCTGCTCCTAATGCACAAACTTGGTGAAACTATTAGCCCGATGAAGGAAGATTTCATCATGGTTCATTTGCAGCATGCATGCTCTCACTGCTGTAAACTAATGGTATCTGGAAAACGTTGGGCTTGTAACCAATGCAGATATTTTCAGCTGTGTGAGAAGTGTTATGAAACAGAGCAGAAACGGGATGATAGAGACAGACACCCTACGAATATGAGGGATAAACATGATTTCCGTCCATATGACATCACTGATGTACCAGTGGATACGAAGGACAGAGATGAGATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCGTTTCTGAGTCTCTGTCAAGGGAATCATTATCAGTATGATACTTTACGGAGGGCTAAACATTCCTCTATGATGGTGCTTTACCATCTTCATAATCCAACTGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTCGACATTGAAGCAGGTCAAGGCTGGCGTTGTGAAGTTTGCCCTGAATATGATGTTTGCAATAGTTGTTATCAGAAGGATGGTGGTGTGGATCATCATCATAAATTGACAAATCATCCATCCATTGCTGACCGTGATGCACAGAATAAGGAAGCTAGGCAAATGCGAGTTGTACAGCTTCGGAGAATGCTTGATCTTCTAGTGCATGCATCACAATGTCGTTCTGCACAATGTATGTATCCCAATTGTCGCAAGGTCAAGGGACTTTTCCGCCATGGAATTCAGTGTAAAGTTCGTGCATCTGGAGGTTGTGTTCTCTGTAAAAAAATGTGGTACCTCCTGCAACTTCATGCTCGAGCATGCAAAGTATCGGAGTGCCATGTGCCTCGTTGCAGAGATCTAAAAGAACATTTGAGGAGGCTGCAGCAACAGTCTGATTCAAGGCGAAGAGCTGCTGTGATGGAGATGATGAGACAGAGAGCTGCTGAGATAAACAATTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1721

Amino Acids

193.85

Weight (kDa)

8.51

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	657 - 726	5.4e-15	TAZ zinc finger
PHD	PF00628	1041 - 1081	8.8e-06	PHD-finger
HAT_KAT11	PF08214	1139 - 1355	3.1e-37	Histone acetylation protein
ZZ	PF00569	1539 - 1579	7.9e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	1607 - 1677	1.9e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1235, 2649
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	5 cut(s)	31, 47, 1810, 4212, 4661
Acc65I	GGTACC	1 cut(s)	4989
AccB1I	GGYRCC	3 cut(s)	43, 2233, 4989
AccB7I	CCANNNNNTGG	2 cut(s)	569, 2890
AccBSI	CCGCTC	1 cut(s)	1975
AccI	GTMKAC	2 cut(s)	2304, 3480
AccII	CGCG	1 cut(s)	4193
AccIII	TCCGGA	3 cut(s)	2567, 2809, 3865
AciI	CCGC	9 cut(s)	840, 1067, 1075, 1975, 2363, 2738, 3505, 3719, 4927
AclI	AACGTT	1 cut(s)	4318
AclWI	GGATC	7 cut(s)	1058, 2233, 2287, 2354, 4077, 4132, 4755
AcoI	YGGCCR	4 cut(s)	531, 1927, 2854, 3214
AcuI	CTGAAG	4 cut(s)	1623, 1760, 2058, 2376
AcvI	CACGTG	1 cut(s)	1279
AdeI	CACNNNGTG	3 cut(s)	455, 2978, 3308
AfaI	GTAC	7 cut(s)	1468, 3245, 3570, 3742, 4458, 4830, 4991
AflIII	ACRYGT	4 cut(s)	324, 555, 663, 4191
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	6 cut(s)	439, 562, 631, 712, 2472, 3439
AjuI	GAANNNNNNNTTGG	2 cut(s)	3750, 3782
AloI	GAACNNNNNNTCC	2 cut(s)	4953, 4985
Alw21I	GWGCWC	6 cut(s)	162, 172, 1759, 2986, 3205, 3960
AlwI	GGATC	7 cut(s)	1058, 2233, 2287, 2354, 4077, 4132, 4755
AlwNI	CAGNNNCTG	2 cut(s)	1157, 2447
Ama87I	CYCGRG	2 cut(s)	155, 5010
Aor13HI	TCCGGA	3 cut(s)	2567, 2809, 3865
ApaI	GGGCCC	1 cut(s)	2827
Asp718I	GGTACC	1 cut(s)	4989
AspLEI	GCGC	3 cut(s)	2013, 2997, 3663
AsuC2I	CCSGG	2 cut(s)	2189, 4056
AsuHPI	GGTGA	8 cut(s)	289, 1103, 1406, 1697, 3038, 3851, 4055, 4238
AvaI	CYCGRG	2 cut(s)	155, 5010
AvaII	GGWCC	4 cut(s)	151, 1916, 3160, 4201
AxyI	CCTNAGG	1 cut(s)	3708
BaeGI	GKGCMC	2 cut(s)	48, 2827
BaeI	ACNNNNGTAYC	6 cut(s)	1194, 1227, 3069, 3102, 4440, 4473
BalI	TGGCCA	2 cut(s)	1929, 2856
BanI	GGYRCC	3 cut(s)	43, 2233, 4989
BanII	GRGCYC	5 cut(s)	162, 1759, 2827, 3960, 4156
BauI	CACGAG	2 cut(s)	132, 3069
BbrPI	CACGTG	1 cut(s)	1279
BbsI	GAAGAC	2 cut(s)	3534, 4142
Bbv12I	GWGCWC	6 cut(s)	162, 172, 1759, 2986, 3205, 3960
BbvCI	CCTCAGC	1 cut(s)	1021
BceAI	ACGGC	4 cut(s)	321, 1117, 3050, 3648
BcgI	CGANNNNNNTGC	3 cut(s)	37, 2294, 2328
BciT130I	CCWGG	6 cut(s)	441, 564, 633, 714, 2474, 3441
BciVI	GTATCC	6 cut(s)	399, 1222, 2479, 3764, 4459, 4905
BclI	TGATCA	2 cut(s)	351, 1297
BcnI	CCSGG	2 cut(s)	2189, 4056
BfaI	CTAG	8 cut(s)	522, 1875, 2316, 3119, 4023, 4512, 4812, 4856
BfmI	CTRYAG	4 cut(s)	3540, 4017, 4062, 5078
BfoI	RGCGCY	1 cut(s)	3664
BfuAI	ACCTGC	5 cut(s)	31, 47, 1810, 4212, 4661
BfuI	GTATCC	6 cut(s)	399, 1222, 2479, 3764, 4459, 4905
BglII	AGATCT	2 cut(s)	192, 5053
BlpI	GCTNAGC	2 cut(s)	1623, 2670
BmcAI	AGTACT	1 cut(s)	1468
Bme1390I	CCNGG	8 cut(s)	441, 564, 633, 714, 2189, 2474, 3441, 4056
Bme18I	GGWCC	4 cut(s)	151, 1916, 3160, 4201
BmeT110I	CYCGRG	2 cut(s)	155, 5010
BmgBI	CACGTC	1 cut(s)	173
BmrFI	CCNGG	8 cut(s)	441, 564, 633, 714, 2189, 2474, 3441, 4056
BmrI	ACTGGG	1 cut(s)	1377
BmuI	ACTGGG	1 cut(s)	1377
BpiI	GAAGAC	2 cut(s)	3534, 4142
BplI	GAGNNNNNCTC	6 cut(s)	1606, 1638, 2384, 2416, 3720, 3752
BpmI	CTGGAG	4 cut(s)	675, 3462, 3747, 4980
Bpu10I	CCTNAGC	4 cut(s)	1021, 1505, 3923, 4008
Bpu1102I	GCTNAGC	2 cut(s)	1623, 2670
BpuEI	CTTGAG	3 cut(s)	1633, 2711, 4511
BpuMI	CCSGG	2 cut(s)	2189, 4056
BsaAI	YACGTR	2 cut(s)	1279, 3794
BsaBI	GATNNNNATC	3 cut(s)	1008, 1068, 4752
BsaI	GGTCTC	1 cut(s)	2843
BsaJI	CCNNGG	9 cut(s)	300, 486, 713, 868, 877, 2472, 3335, 3561, 4930
BsaWI	WCCGGW	3 cut(s)	2567, 2809, 3865
BsaXI	ACNNNNNCTCC	6 cut(s)	266, 296, 1210, 1240, 4953, 4983
Bse118I	RCCGGY	1 cut(s)	3023
Bse1I	ACTGG	8 cut(s)	144, 514, 539, 997, 1383, 2339, 3730, 4460
Bse21I	CCTNAGG	1 cut(s)	3708
Bse3DI	GCAATG	5 cut(s)	2120, 2895, 2907, 3924, 4779
Bse8I	GATNNNNATC	3 cut(s)	1008, 1068, 4752
BseAI	TCCGGA	3 cut(s)	2567, 2809, 3865
BseBI	CCWGG	6 cut(s)	441, 564, 633, 714, 2474, 3441
BseDI	CCNNGG	9 cut(s)	300, 486, 713, 868, 877, 2472, 3335, 3561, 4930
BseJI	GATNNNNATC	3 cut(s)	1008, 1068, 4752
BseMI	GCAATG	5 cut(s)	2120, 2895, 2907, 3924, 4779
BseNI	ACTGG	8 cut(s)	144, 514, 539, 997, 1383, 2339, 3730, 4460
BseRI	GAGGAG	6 cut(s)	120, 287, 1009, 1645, 2621, 5086
BseSI	GKGCMC	2 cut(s)	48, 2827
BseYI	CCCAGC	2 cut(s)	225, 1452
BsgI	GTGCAG	2 cut(s)	2949, 4866
Bsh1236I	CGCG	1 cut(s)	4193
BshNI	GGYRCC	3 cut(s)	43, 2233, 4989
BsiHKAI	GWGCWC	6 cut(s)	162, 172, 1759, 2986, 3205, 3960
BsiHKCI	CYCGRG	2 cut(s)	155, 5010
BsiSI	CCGG	6 cut(s)	2189, 2568, 2810, 3024, 3866, 4056
BslFI	GGGAC	4 cut(s)	39, 895, 3109, 4932
BsmBI	CGTCTC	2 cut(s)	1329, 1680
BsmFI	GGGAC	4 cut(s)	39, 895, 3109, 4932
BsmI	GAATGC	3 cut(s)	10, 1624, 4848
Bso31I	GGTCTC	1 cut(s)	2843
BsoBI	CYCGRG	2 cut(s)	155, 5010
Bsp120I	GGGCCC	1 cut(s)	2823
Bsp1286I	GDGCHC	9 cut(s)	48, 162, 172, 1759, 2827, 2986, 3205, 3960, 4156
Bsp13I	TCCGGA	3 cut(s)	2567, 2809, 3865
Bsp1407I	TGTACA	1 cut(s)	4828
Bsp1720I	GCTNAGC	2 cut(s)	1623, 2670
Bsp19I	CCATGG	1 cut(s)	4930
BspACI	CCGC	9 cut(s)	840, 1067, 1075, 1975, 2363, 2738, 3505, 3719, 4927
BspEI	TCCGGA	3 cut(s)	2567, 2809, 3865
BspFNI	CGCG	1 cut(s)	4193
BspHI	TCATGA	1 cut(s)	1969
BspMAI	CTGCAG	3 cut(s)	4021, 4066, 5082
BspMI	ACCTGC	5 cut(s)	31, 47, 1810, 4212, 4661
BspPI	GGATC	7 cut(s)	1058, 2233, 2287, 2354, 4077, 4132, 4755
BspQI	GCTCTTC	1 cut(s)	5098
BspT107I	GGYRCC	3 cut(s)	43, 2233, 4989
BspTNI	GGTCTC	1 cut(s)	2843
BsrBI	CCGCTC	1 cut(s)	1975
BsrDI	GCAATG	5 cut(s)	2120, 2895, 2907, 3924, 4779
BsrFI	RCCGGY	1 cut(s)	3023
BsrGI	TGTACA	1 cut(s)	4828
BsrI	ACTGG	8 cut(s)	144, 514, 539, 997, 1383, 2339, 3730, 4460
BssAI	RCCGGY	1 cut(s)	3023
BssECI	CCNNGG	9 cut(s)	300, 486, 713, 868, 877, 2472, 3335, 3561, 4930
BssSI	CACGAG	2 cut(s)	132, 3069
BssT1I	CCWWGG	5 cut(s)	300, 868, 877, 3561, 4930
Bst2BI	CACGAG	2 cut(s)	132, 3069
Bst2UI	CCWGG	6 cut(s)	441, 564, 633, 714, 2474, 3441
Bst6I	CTCTTC	1 cut(s)	5098
BstAPI	GCANNNNNTGC	1 cut(s)	1696
BstAUI	TGTACA	1 cut(s)	4828
BstBAI	YACGTR	2 cut(s)	1279, 3794
BstDSI	CCRYGG	2 cut(s)	486, 4930
BstFNI	CGCG	1 cut(s)	4193
BstH2I	RGCGCY	1 cut(s)	3664
BstHHI	GCGC	3 cut(s)	2013, 2997, 3663
BstNI	CCWGG	6 cut(s)	441, 564, 633, 714, 2474, 3441
BstSCI	CCNGG	8 cut(s)	439, 562, 631, 712, 2187, 2472, 3439, 4054
BstSFI	CTRYAG	4 cut(s)	3540, 4017, 4062, 5078
BstSLI	GKGCMC	2 cut(s)	48, 2827
BstUI	CGCG	1 cut(s)	4193
BstV2I	GAAGAC	2 cut(s)	3534, 4142
BstX2I	RGATCY	5 cut(s)	192, 2279, 2359, 4069, 5053
BstXI	CCANNNNNNTGG	1 cut(s)	2149
BstYI	RGATCY	5 cut(s)	192, 2279, 2359, 4069, 5053
Bsu36I	CCTNAGG	1 cut(s)	3708
BsuI	GTATCC	6 cut(s)	399, 1222, 2479, 3764, 4459, 4905
BtgI	CCRYGG	2 cut(s)	486, 4930
BtrI	CACGTC	1 cut(s)	173
BtsI	GCAGTG	2 cut(s)	4014, 4288
BveI	ACCTGC	5 cut(s)	31, 47, 1810, 4212, 4661
CaiI	CAGNNNCTG	2 cut(s)	1157, 2447
CciI	TCATGA	1 cut(s)	1969
CfoI	GCGC	3 cut(s)	2013, 2997, 3663
Cfr10I	RCCGGY	1 cut(s)	3023
CseI	GACGC	5 cut(s)	347, 2290, 2341, 4076, 4182
Csp6I	GTAC	7 cut(s)	1467, 3244, 3569, 3741, 4457, 4829, 4990
CspCI	CAANNNNNGTGG	2 cut(s)	3775, 3810
CviQI	GTAC	7 cut(s)	1467, 3244, 3569, 3741, 4457, 4829, 4990
DraIII	CACNNNGTG	3 cut(s)	455, 2978, 3308
EaeI	YGGCCR	4 cut(s)	531, 1927, 2854, 3214
Eam1104I	CTCTTC	1 cut(s)	5098
EarI	CTCTTC	1 cut(s)	5098
EciI	GGCGGA	1 cut(s)	4916
Ecl136II	GAGCTC	3 cut(s)	160, 1757, 3958
Eco130I	CCWWGG	5 cut(s)	300, 868, 877, 3561, 4930
Eco147I	AGGCCT	1 cut(s)	3706
Eco24I	GRGCYC	5 cut(s)	162, 1759, 2827, 3960, 4156
Eco31I	GGTCTC	1 cut(s)	2843
Eco32I	GATATC	2 cut(s)	620, 1497
Eco47I	GGWCC	4 cut(s)	151, 1916, 3160, 4201
Eco53kI	GAGCTC	3 cut(s)	160, 1757, 3958
Eco57I	CTGAAG	4 cut(s)	1623, 1760, 2058, 2376
Eco72I	CACGTG	1 cut(s)	1279
Eco81I	CCTNAGG	1 cut(s)	3708
Eco88I	CYCGRG	2 cut(s)	155, 5010
EcoICRI	GAGCTC	3 cut(s)	160, 1757, 3958
EcoO109I	RGGNCCY	4 cut(s)	125, 1916, 2823, 4201
EcoRI	GAATTC	4 cut(s)	1189, 3545, 4499, 4935
EcoRII	CCWGG	6 cut(s)	439, 562, 631, 712, 2472, 3439
EcoRV	GATATC	2 cut(s)	620, 1497
EcoT14I	CCWWGG	5 cut(s)	300, 868, 877, 3561, 4930
EcoT22I	ATGCAT	3 cut(s)	1257, 4282, 4867
EcoT38I	GRGCYC	5 cut(s)	162, 1759, 2827, 3960, 4156
ErhI	CCWWGG	5 cut(s)	300, 868, 877, 3561, 4930
Esp3I	CGTCTC	2 cut(s)	1329, 1680
FalI	AAGNNNNNCTT	2 cut(s)	2565, 2597
FaqI	GGGAC	4 cut(s)	39, 895, 3109, 4932
FauNDI	CATATG	4 cut(s)	18, 919, 1827, 4441
FbaI	TGATCA	2 cut(s)	351, 1297
FblI	GTMKAC	2 cut(s)	2304, 3480
FriOI	GRGCYC	5 cut(s)	162, 1759, 2827, 3960, 4156
FspBI	CTAG	8 cut(s)	522, 1875, 2316, 3119, 4023, 4512, 4812, 4856
GlaI	GCGC	3 cut(s)	2012, 2996, 3662
GsaI	CCCAGC	2 cut(s)	229, 1456
GsuI	CTGGAG	4 cut(s)	675, 3462, 3747, 4980
HaeII	RGCGCY	1 cut(s)	3664
HapII	CCGG	6 cut(s)	2189, 2568, 2810, 3024, 3866, 4056
HgaI	GACGC	5 cut(s)	347, 2290, 2341, 4076, 4182
HhaI	GCGC	3 cut(s)	2013, 2997, 3663
Hin6I	GCGC	3 cut(s)	2011, 2995, 3661
HinP1I	GCGC	3 cut(s)	2011, 2995, 3661
HincII	GTYRAC	5 cut(s)	985, 1262, 2305, 2793, 3481
HindII	GTYRAC	5 cut(s)	985, 1262, 2305, 2793, 3481
HindIII	AAGCTT	4 cut(s)	2939, 3180, 3896, 3930
HpaI	GTTAAC	1 cut(s)	985
HpaII	CCGG	6 cut(s)	2189, 2568, 2810, 3024, 3866, 4056
HphI	GGTGA	8 cut(s)	289, 1103, 1406, 1697, 3038, 3851, 4055, 4238
Hpy99I	CGWCG	2 cut(s)	1663, 2306
HpyCH4IV	ACGT	6 cut(s)	172, 326, 1278, 1673, 3793, 4318
HpySE526I	ACGT	6 cut(s)	172, 326, 1278, 1673, 3793, 4318
HspAI	GCGC	3 cut(s)	2011, 2995, 3661
Kpn2I	TCCGGA	3 cut(s)	2567, 2809, 3865
KpnI	GGTACC	1 cut(s)	4993
Ksp22I	TGATCA	2 cut(s)	351, 1297
KspAI	GTTAAC	1 cut(s)	985
LguI	GCTCTTC	1 cut(s)	5098
LmnI	GCTCC	9 cut(s)	1148, 1754, 2560, 2812, 2893, 3443, 3635, 4212, 4627
MaeI	CTAG	8 cut(s)	522, 1875, 2316, 3119, 4023, 4512, 4812, 4856
MaeII	ACGT	6 cut(s)	172, 326, 1278, 1673, 3793, 4318
MbiI	CCGCTC	1 cut(s)	1975
MfeI	CAATTG	5 cut(s)	978, 1301, 1709, 1796, 4900
MflI	RGATCY	5 cut(s)	192, 2279, 2359, 4069, 5053
MhlI	GDGCHC	9 cut(s)	48, 162, 172, 1759, 2827, 2986, 3205, 3960, 4156
MlsI	TGGCCA	2 cut(s)	1929, 2856
MluI	ACGCGT	1 cut(s)	4191
MluNI	TGGCCA	2 cut(s)	1929, 2856
MlyI	GAGTC	5 cut(s)	430, 1717, 1819, 3091, 4537
MmeI	TCCRAC	3 cut(s)	1732, 2521, 4640
Mox20I	TGGCCA	2 cut(s)	1929, 2856
Mph1103I	ATGCAT	3 cut(s)	1257, 4282, 4867
MroI	TCCGGA	3 cut(s)	2567, 2809, 3865
MscI	TGGCCA	2 cut(s)	1929, 2856
MseI	TTAA	8 cut(s)	402, 720, 984, 2561, 2685, 3375, 3693, 3714
MslI	CAYNNNNRTG	1 cut(s)	4870
Msp20I	TGGCCA	2 cut(s)	1929, 2856
MspA1I	CMGCKG	6 cut(s)	229, 293, 1075, 2750, 3505, 4351
MspI	CCGG	6 cut(s)	2189, 2568, 2810, 3024, 3866, 4056
MspR9I	CCNGG	8 cut(s)	441, 564, 633, 714, 2189, 2474, 3441, 4056
MunI	CAATTG	5 cut(s)	978, 1301, 1709, 1796, 4900
Mva1269I	GAATGC	3 cut(s)	10, 1624, 4848
MvaI	CCWGG	6 cut(s)	441, 564, 633, 714, 2474, 3441
MvnI	CGCG	1 cut(s)	4193
NciI	CCSGG	2 cut(s)	2189, 4056
NcoI	CCATGG	1 cut(s)	4930
NdeI	CATATG	4 cut(s)	18, 919, 1827, 4441
NmuCI	GTSAC	9 cut(s)	295, 447, 1830, 3026, 3167, 3350, 4012, 4043, 4633
NsiI	ATGCAT	3 cut(s)	1257, 4282, 4867
PaeI	GCATGC	5 cut(s)	2900, 4280, 4284, 4865, 5019
PaeR7I	CTCGAG	1 cut(s)	5010
PagI	TCATGA	1 cut(s)	1969
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	3706
PciI	ACATGT	2 cut(s)	555, 663
PciSI	GCTCTTC	1 cut(s)	5098
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PctI	GAATGC	3 cut(s)	10, 1624, 4848
PflMI	CCANNNNNTGG	2 cut(s)	569, 2890
PfoI	TCCNGGA	1 cut(s)	3439
PleI	GAGTC	5 cut(s)	430, 1717, 1818, 3091, 4536
PmaCI	CACGTG	1 cut(s)	1279
PmlI	CACGTG	1 cut(s)	1279
PpsI	GAGTC	5 cut(s)	430, 1717, 1818, 3091, 4536
Ppu21I	YACGTR	2 cut(s)	1279, 3794
PpuMI	RGGWCCY	2 cut(s)	1916, 4201
PscI	ACATGT	2 cut(s)	555, 663
PsiI	TTATAA	2 cut(s)	1235, 2649
Psp124BI	GAGCTC	3 cut(s)	162, 1759, 3960
Psp1406I	AACGTT	1 cut(s)	4318
Psp5II	RGGWCCY	2 cut(s)	1916, 4201
Psp6I	CCWGG	6 cut(s)	439, 562, 631, 712, 2472, 3439
PspCI	CACGTG	1 cut(s)	1279
PspFI	CCCAGC	2 cut(s)	225, 1452
PspGI	CCWGG	6 cut(s)	439, 562, 631, 712, 2472, 3439
PspOMI	GGGCCC	1 cut(s)	2823
PspPPI	RGGWCCY	2 cut(s)	1916, 4201
PspXI	VCTCGAGB	1 cut(s)	5010
PstI	CTGCAG	3 cut(s)	4021, 4066, 5082
PstNI	CAGNNNCTG	2 cut(s)	1157, 2447
PsuI	RGATCY	5 cut(s)	192, 2279, 2359, 4069, 5053
PvuII	CAGCTG	4 cut(s)	229, 293, 2750, 4351
RsaI	GTAC	7 cut(s)	1468, 3245, 3570, 3742, 4458, 4830, 4991
RsaNI	GTAC	7 cut(s)	1467, 3244, 3569, 3741, 4457, 4829, 4990
RseI	CAYNNNNRTG	1 cut(s)	4870
SacI	GAGCTC	3 cut(s)	162, 1759, 3960
SalI	GTCGAC	2 cut(s)	2303, 3479
SapI	GCTCTTC	1 cut(s)	5098
SaqAI	TTAA	8 cut(s)	402, 720, 984, 2561, 2685, 3375, 3693, 3714
ScaI	AGTACT	1 cut(s)	1468
SchI	GAGTC	5 cut(s)	430, 1717, 1819, 3091, 4537
ScrFI	CCNGG	8 cut(s)	441, 564, 633, 714, 2189, 2474, 3441, 4056
SduI	GDGCHC	9 cut(s)	48, 162, 172, 1759, 2827, 2986, 3205, 3960, 4156
SfcI	CTRYAG	4 cut(s)	3540, 4017, 4062, 5078
Sfr274I	CTCGAG	1 cut(s)	5010
SinI	GGWCC	4 cut(s)	151, 1916, 3160, 4201
SlaI	CTCGAG	1 cut(s)	5010
SmiMI	CAYNNNNRTG	1 cut(s)	4870
SmlI	CTYRAG	4 cut(s)	1612, 2690, 4490, 5010
SmoI	CTYRAG	4 cut(s)	1612, 2690, 4490, 5010
SphI	GCATGC	5 cut(s)	2900, 4280, 4284, 4865, 5019
SseBI	AGGCCT	1 cut(s)	3706
SsiI	CCGC	9 cut(s)	840, 1067, 1075, 1975, 2363, 2738, 3505, 3719, 4927
SspI	AATATT	3 cut(s)	1924, 3519, 3782
SspMI	CTAG	8 cut(s)	522, 1875, 2316, 3119, 4023, 4512, 4812, 4856
SstI	GAGCTC	3 cut(s)	162, 1759, 3960
StuI	AGGCCT	1 cut(s)	3706
StyD4I	CCNGG	8 cut(s)	439, 562, 631, 712, 2187, 2472, 3439, 4054
StyI	CCWWGG	5 cut(s)	300, 868, 877, 3561, 4930
TaiI	ACGT	6 cut(s)	175, 329, 1281, 1676, 3796, 4321
TaqI	TCGA	8 cut(s)	1726, 1943, 2304, 2986, 3480, 3777, 4659, 5011
TatI	WGTACW	4 cut(s)	1466, 3243, 3568, 4828
TauI	GCSGC	1 cut(s)	1078
Tru1I	TTAA	8 cut(s)	402, 720, 984, 2561, 2685, 3375, 3693, 3714
Tru9I	TTAA	8 cut(s)	402, 720, 984, 2561, 2685, 3375, 3693, 3714
TseFI	GTSAC	9 cut(s)	295, 447, 1830, 3026, 3167, 3350, 4012, 4043, 4633
Tsp45I	GTSAC	9 cut(s)	295, 447, 1830, 3026, 3167, 3350, 4012, 4043, 4633
TspGWI	ACGGA	8 cut(s)	105, 475, 630, 1850, 3679, 3728, 4424, 4582
Van91I	CCANNNNNTGG	2 cut(s)	569, 2890
VpaK11BI	GGWCC	4 cut(s)	151, 1916, 3160, 4201
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 884
XhoI	CTCGAG	1 cut(s)	5010
XmiI	GTMKAC	2 cut(s)	2304, 3480
XspI	CTAG	8 cut(s)	522, 1875, 2316, 3119, 4023, 4512, 4812, 4856
ZrmI	AGTACT	1 cut(s)	1468
Zsp2I	ATGCAT	3 cut(s)	1257, 4282, 4867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.