Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

15180546 .. 15182316

Gene Structure 1771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1157500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTCACCCATCTTGGAGAAACCATTTCGCCAATGAAGGAGGATTTCATCATGGTTCATTTGCAGTACGCATGCTCCCACTGTTGTATACTAATGGTATCAGGAAACCGTTGGTCCTGCACTCAATGCAGAAATTTTCAGCTTTGTAATAATTTGTTTGGAGAAGAAGGGACGAAGGTTCTGGTATTGTTGCTAATTGAGTTCAAGGTTCTGTTAGAATTTGCGGACAGTTTGATCATTGGAATAAGGTTTGCCAATTTGATTTGTTGTAATTACTTTACATGGGACGACAGGTGTTATGAAGCAGAGCAAAAACGGGAAGAAAGAGACAGGCACCCTATCAATCAGAGGGAAAAGCATGAATTGCGTCCTTTTCAAATTGCTGATGTACCTATGGAGACAAAGGACAGAGATGAAATCCTTGAGAGTGAATTCTTTGACACTAGACAGGCATTTCTCAGTCTTTGTCAAGGGAATCATTATCAGTATGATACTTTACGGCGGGCTAAACACTCCTCTATCATGGTCCTTTACCATCTTCATAACCCACCTGCTCCTGCGTTTGTGACAACATGCAATATATGTCATCTCAACATTGAAACAGGGCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATACGATGTATGCAATAACTGTTATCAGAAGGAAGGCGGTGTAGATCATCATCATAAGTTGACAAATCATCCATCCATCACTGATCGCGATGCACAAAACAAAGAAGCTAGACAAATCCGAGTTGTACAGCTTCGGAAAATGCTTGACCTTCTGGTGCATGCATCACAATGTCGTTCTGCACAATGTCAATACCCCAATTGCCGTAAGGTGAAGGGGCTTTTCCGCCATGGAATTCATTGCAAAGTCCGTGCATCTGGAGGATGTGTTCTCTGCAAGAAAATGTGGTATCTTCTTCAACTTCATGCTCGAGCTTGCAAAGTATCCGAGTGCCATGTGCCGCGTTGCAGAGATTTAAAGGAGCATTTGAGGAGACTACAGCAGCAGTCTGATTCAAGAAGAAGAGCTGCTGTGATGGAGATGATGAGCCAGAGGGCTGCCGAGCTACACAACAGTTCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

366

Amino Acids

42.63

Weight (kDa)

8.44

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZZ	PF00569	189 - 229	9.6e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	257 - 327	3.9e-14	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	2 cut(s)	723, 976
AciI	CCGC	5 cut(s)	224, 502, 672, 859, 974
AcsI	RAATTY	4 cut(s)	133, 218, 431, 867
AfaI	GTAC	3 cut(s)	68, 390, 762
AgsI	TTSAA	5 cut(s)	205, 377, 599, 932, 1029
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
AluBI	AGCT	6 cut(s)	142, 743, 766, 947, 1040, 1078
AluI	AGCT	6 cut(s)	142, 743, 766, 947, 1040, 1078
Alw26I	GTCTC	3 cut(s)	321, 392, 1000
Ama87I	CYCGRG	1 cut(s)	942
ApeKI	GCWGC	3 cut(s)	1015, 1040, 1070
ApoI	RAATTY	4 cut(s)	133, 218, 431, 867
AspS9I	GGNCC	2 cut(s)	114, 526
AsuHPI	GGTGA	1 cut(s)	856
AvaI	CYCGRG	1 cut(s)	942
AvaII	GGWCC	2 cut(s)	114, 526
BanI	GGYRCC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	1027, 1027, 1057
BccI	CCATC	5 cut(s)	18, 543, 715, 719, 1042
BceAI	ACGGC	2 cut(s)	515, 822
BciVI	GTATCC	1 cut(s)	967
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	321, 392, 1000
BfaI	CTAG	2 cut(s)	444, 744
BfmI	CTRYAG	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	967
BisI	GCNGC	4 cut(s)	974, 1016, 1041, 1071
BlsI	GCNGC	4 cut(s)	975, 1017, 1042, 1072
Bme18I	GGWCC	2 cut(s)	114, 526
BmeT110I	CYCGRG	1 cut(s)	942
BmgT120I	GGNCC	2 cut(s)	114, 526
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	3 cut(s)	715, 806, 896
BpmI	CTGGAG	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	862
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 885, 915
Bse3DI	GCAATG	1 cut(s)	871
Bse8I	GATNNNNATC	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	862
BseGI	GGATG	3 cut(s)	703, 707, 902
BseJI	GATNNNNATC	1 cut(s)	684
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	505, 1018
BseXI	GCAGC	3 cut(s)	1027, 1027, 1057
BsgI	GTGCAG	2 cut(s)	103, 798
Bsh1236I	CGCG	2 cut(s)	723, 976
BshNI	GGYRCC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	942
BslFI	GGGAC	2 cut(s)	184, 299
BsmAI	GTCTC	3 cut(s)	321, 392, 1000
BsmFI	GGGAC	2 cut(s)	184, 299
BsoBI	CYCGRG	1 cut(s)	942
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	234, 679, 718
Bsp19I	CCATGG	1 cut(s)	862
Bsp68I	TCGCGA	1 cut(s)	723
BspACI	CCGC	5 cut(s)	224, 502, 672, 859, 974
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	2 cut(s)	723, 976
BspLI	GGNNCC	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	1030
BspT107I	GGYRCC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	871
BsrGI	TGTACA	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	862
BssMI	GATC	3 cut(s)	234, 679, 718
BssNAI	GTATAC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	862
Bst1107I	GTATAC	1 cut(s)	89
Bst4CI	ACNGT	5 cut(s)	83, 110, 230, 656, 1088
Bst6I	CTCTTC	1 cut(s)	1030
BstAPI	GCANNNNNTGC	2 cut(s)	126, 364
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	4 cut(s)	73, 504, 795, 949
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	3 cut(s)	703, 707, 902
BstFNI	CGCG	2 cut(s)	723, 976
BstKTI	GATC	3 cut(s)	237, 682, 721
BstMAI	GTCTC	3 cut(s)	321, 392, 1000
BstMBI	GATC	3 cut(s)	234, 679, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 364, 613
BstNSI	RCATGY	3 cut(s)	75, 576, 797
BstSFI	CTRYAG	1 cut(s)	1010
BstUI	CGCG	2 cut(s)	723, 976
BstV1I	GCAGC	3 cut(s)	1027, 1027, 1057
BstZ17I	GTATAC	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	967
BtgI	CCRYGG	1 cut(s)	862
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	3 cut(s)	703, 707, 902
BtsIMutI	CAGTG	2 cut(s)	79, 714
BtuMI	TCGCGA	1 cut(s)	723
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	73, 504, 795, 949
Cfr13I	GGNCC	2 cut(s)	114, 526
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	67, 389, 761
CviQI	GTAC	3 cut(s)	67, 389, 761
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	3 cut(s)	236, 681, 720
DpnII	GATC	3 cut(s)	234, 679, 718
DraI	TTTAAA	1 cut(s)	990
Eam1104I	CTCTTC	1 cut(s)	1030
EarI	CTCTTC	1 cut(s)	1030
EciI	GGCGGA	1 cut(s)	848
Eco130I	CCWWGG	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	114, 526
Eco88I	CYCGRG	1 cut(s)	942
EcoRI	GAATTC	2 cut(s)	431, 867
EcoT14I	CCWWGG	1 cut(s)	862
EcoT22I	ATGCAT	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	862
FaqI	GGGAC	2 cut(s)	184, 299
FauI	CCCGC	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	974, 1016, 1041, 1071
FokI	GGATG	3 cut(s)	690, 694, 909
Fsp4HI	GCNGC	4 cut(s)	974, 1016, 1041, 1071
FspBI	CTAG	2 cut(s)	444, 744
GluI	GCNGC	4 cut(s)	974, 1016, 1041, 1071
GsuI	CTGGAG	1 cut(s)	912
HgaI	GACGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	2 cut(s)	475, 1025
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	3 cut(s)	6, 89, 696
Hpy188I	TCNGA	6 cut(s)	348, 663, 755, 771, 961, 1024
Hpy188III	TCNNGA	4 cut(s)	102, 722, 891, 1029
Hpy8I	GTNNAC	3 cut(s)	6, 89, 696
HpyAV	CCTTC	7 cut(s)	31, 161, 169, 658, 662, 794, 841
HpyCH4III	ACNGT	5 cut(s)	83, 110, 230, 656, 1088
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 364, 613
HpyF3I	CTNAG	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	234, 679, 718
LguI	GCTCTTC	1 cut(s)	1030
LmnI	GCTCC	3 cut(s)	80, 559, 994
Lsp1109I	GCAGC	3 cut(s)	1027, 1027, 1057
LweI	GCATC	3 cut(s)	715, 806, 896
MaeI	CTAG	2 cut(s)	444, 744
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	3 cut(s)	236, 681, 720
MboI	GATC	3 cut(s)	234, 679, 718
MboII	GAAGA	7 cut(s)	176, 332, 530, 917, 920, 1044, 1047
MfeI	CAATTG	1 cut(s)	832
MnlI	CCTC	6 cut(s)	34, 342, 526, 887, 996, 1059
Mph1103I	ATGCAT	1 cut(s)	799
MseI	TTAA	1 cut(s)	989
MslI	CAYNNNNRTG	1 cut(s)	802
MunI	CAATTG	1 cut(s)	832
MvnI	CGCG	2 cut(s)	723, 976
MwoI	GCNNNNNNNGC	3 cut(s)	126, 364, 613
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	3 cut(s)	234, 679, 718
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	565
NruI	TCGCGA	1 cut(s)	723
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	3 cut(s)	75, 576, 797
PaeI	GCATGC	2 cut(s)	75, 797
PaeR7I	CTCGAG	1 cut(s)	942
PaqCI	CACCTGC	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	475, 1025
PkrI	GCNGC	4 cut(s)	975, 1017, 1042, 1072
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	114, 526
PspXI	VCTCGAGB	1 cut(s)	942
RruI	TCGCGA	1 cut(s)	723
RsaI	GTAC	3 cut(s)	68, 390, 762
RsaNI	GTAC	3 cut(s)	67, 389, 761
RseI	CAYNNNNRTG	1 cut(s)	802
SapI	GCTCTTC	1 cut(s)	1030
SaqAI	TTAA	1 cut(s)	989
SatI	GCNGC	4 cut(s)	974, 1016, 1041, 1071
Sau3AI	GATC	3 cut(s)	234, 679, 718
Sau96I	GGNCC	2 cut(s)	114, 526
SfaNI	GCATC	3 cut(s)	715, 806, 896
SfcI	CTRYAG	1 cut(s)	1010
Sfr274I	CTCGAG	1 cut(s)	942
SinI	GGWCC	2 cut(s)	114, 526
SlaI	CTCGAG	1 cut(s)	942
SmiMI	CAYNNNNRTG	1 cut(s)	802
SmlI	CTYRAG	2 cut(s)	422, 942
SmoI	CTYRAG	2 cut(s)	422, 942
SphI	GCATGC	2 cut(s)	75, 797
SsiI	CCGC	5 cut(s)	224, 502, 672, 859, 974
SspMI	CTAG	2 cut(s)	444, 744
StyI	CCWWGG	1 cut(s)	862
TaaI	ACNGT	5 cut(s)	83, 110, 230, 656, 1088
TaqI	TCGA	1 cut(s)	943
TatI	WGTACW	1 cut(s)	760
TauI	GCSGC	1 cut(s)	976
TfiI	GAWTC	2 cut(s)	475, 1025
Tru1I	TTAA	1 cut(s)	989
Tru9I	TTAA	1 cut(s)	989
TscAI	CASTG	2 cut(s)	86, 721
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	1015, 1040, 1070
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	9 cut(s)	37, 47, 50, 315, 375, 429, 530, 860, 926
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	2 cut(s)	86, 721
VpaK11BI	GGWCC	2 cut(s)	114, 526
XapI	RAATTY	4 cut(s)	133, 218, 431, 867
XceI	RCATGY	3 cut(s)	75, 576, 797
XhoI	CTCGAG	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	2 cut(s)	444, 744
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.