Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Reverse (-)

14189983 .. 14200690

Gene Structure 10708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1170000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5244 bp

ATGAATGTGCAGACACACATGTCAGGACACATATCGGGGCAAGTGCCCAATCAGGCAGGATCTCAGATGCCTGTGCTCTCCCAGCATAATGGAAGTGCCCTTGCTCCCCAAATGCAAAATTTAGGTGGGCCTGCTCGCGCTATGTCCAACATGGATCCTGAATTTATGAGGGCACGCCATATTGTGCAGGAAAGAATACGCCAAATTATACAGCAGCGACAATTTTCCCAGCCAATGAATGACATGAAGTTAAGGGGGATTGTTCAAAAATTGGATGAGTGTTTATTGAAAAGTGCTCGGGACAAGGACGACTATATGAACCCAGAAACGTTAGAGAGTCGTTTGCAAAATTTGATTAAGCGACCCTCAAATCAAAGCCAACAGTATCAACAGGCTGTTAATTCTTCCTCTCCTGCTGGTACGATGATACCAACACCCGGTATGTCACACAATGGGAATCCAAATATGATGGTTACTTCTATGGATGCTTCTATGAACACTGCTAGAGGTAGTACTGGCATAGCGCCTACTACAGTCAACACAGGAAACCTGGTGCCCACTGGTGCCATACATGGCGGTTCATTCAATAGATCTGATGGTTCTTTGTCTAATGGCTATCAGCAGTCTCCTGCCAGTTTCTCCATTGGTACTGGAGGGAACATGTCATCAATGGGTGTGCAAAGAATGGCTAGCCAAATGATTCCTACCCCTGGGTTTAGTAGCAGTAATAATCAGTCTTACATGAATTCGGATTCTTCTAATAATGGAGGTGGGTTCTCTAGTGTTGATTCTTCAATGGTAACACAACCACAACAGCAAAAGCAGCATATTGGTGGTCAAAATAGCCGTATACTTCATAGCCTTGGCAGCCAAATGAATAGTGGAATAAGGTCTGGCATGCAGCAGAAATCATATGGGTTGCCAAATGGGGCTCTAAATGGTGGGTTGGGATTTGGGAACAGTTTACCAGTTGTTAATGATTCTGGCACTTCTGAGGGCTATCTAACCTCAACGCCCCACGCTAACTCTTCCAAACCATTACAACAGCACTTTGATCAACATCAGCGGCCGGTAATGCAAGGTGATAGCTATGGAGTGAGTAATGCAGATTCTTTTGGTTCTGGAAACTACTATGGTGCTGCGACCTCTGTTGGGTCAATGCTGAATCCTCAGAATTTGAATTCAGTCAGCTCGACACCCATGTCCAAGGCCATCTCTCCCCTTATAAATAGTCAGTCAAATGTACATGCTGCCCAGCAAAGTGTCCATGCGAAGCCTCAACAACTTGATCAATTGGAAAAGATGAATTTCCAAACTCCACTATCTTCAAGAGATAATATTTTCCAGTCTCATCAACAGCAACAATTTCAACAGCAACCTAATCAGTATCAACAGCAACCTAACCAGTATCAACAACAGCAGCATTTAGGTCACCAACAACGTCAACAGAAGCAGCAAAATCAGCAGCCCCAGCATTTGTTAAACAACGATGCTTTTGGTCATTCTCGGATCACACCTGATGTAAGTAGTCAAGCAAATCGTGGTGTGGACCACCATAGTGAAGTTATGCACCAACAAGGTACAGAACAGTTCCAATTATCAGAGATGCATAACCAATTCCATCAGCACCCTGCTGATGATCGATTGAGGAATGCTCAGCATATCCCATCCAGTCAACATGGTATCTCCTCTTCGTTGTCTCAAACTTCCCAGCAAATGCAACAGATATTGCATCCTCACCAATTGGTTGCAGAGTCTCGAAATGATTTCAGCTCTCTTTCTGCTGGAGCTCAATCAGAACCAGTACTGCAGGATCAATGGCATCCTCAGTCACAAGATGGGAGTCACAGACAGGTCAACATTTCCCATGAGCAGCATCTCCAGGAAGATTTCCATCAGAGGATATCTGGGAAAGATGAAGCCCAATGTAATAATTTGTCTTCAGAAGGAACAAATGCTGTTCAAACAATTTCATCTAGAAGCACGTCTCGTCCCCCCAATTCATCGAGTGCTGTTATTGGATCTTCTAATGGCAATCGGGAGAAACAGTTCAAAAATCAACAGAGGTGGCTTTTGTTCTTGCGCCATGCTCGTTGTTGTTCAGCCCGTGAAGGGAAATGTCGCGAACTTAATTGTGTAACTGTTCAAAAACTGTTGAAGCACATGGTAACATGCAATTTACCTCAATGCCCACATCCTCGTTGTCACGTTACCAAGAAATTGGTTGATCATAACAAGAAATGCAAGGACCCAGCTTGCCCTGTTTGCCCTCCTGTTAGGAATTTTCTGCTGACGCATCCGAATAAGGCACAGAATCGTCAAGTTTCTGATTCTGGTTTGCAGAATTCAACAAATGGATCATGTAAAGCCTATGATAGTGAAGACACTTCAGCTAGATTGGTTTTGAAGACAAATCCGGCTGTTGAAACTTCTGAAGACAGGCAACCTTCTATAAAACGCATGAAGATAGAGCAGTCCTCTCAACCTGTTCATCCTGATAGTGTTAGTTCTGCAGTAAAAGCTTCTGTGGTTATTGAACCCCATGTACCCCAGGATTTACAGATCCAGGATTACCAACATGGAGAGATTTCTATGCCACTCAAGTCTGAGATTGCAGAAGTGAAAATGGAAGTTCCTTCAAGTTCTGGACAAGGGAGTGCTGATGAGATGAAGTATAGTGTTGAGGATAAGGGCAATCAAAGGCATGATGGTGAATCTGTCTCATATAATGAGTCCGCTGGTTTAGCTAAGCAAGAAAACATCAAACATGAGAAAGAAACTGATCCAGCTAAACATGAAAATGCTACGCATACTGTGGAAAATGCAGCTGGAACAAAGTCTGGGAAGCCTAAAATAAAGGGGGTATCAATGACTGAACTGTTCACTCCGGAGCAAGTTAGGGCTCACATTACAGGTCTCAGGCAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAATCAAGCAATGGAGCATGCCATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTTGAGAAGCTTACATTTGAGCCACCGCCAATATATTGCACACCTTGCGGTGCTCGTATCAAGCGCAATGCAACGTACTATACAATGGGGGCTGGTGACACACGACATTATTTCTGTATTCCATGCTATAACGAGGCTCGTGGAGACATGATAGTTGTTGATGGGACTAACATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGACGAGGAGACTGAAGAATGGTGGGTCCAATGTGACAAATGTGAAGCTTGGCAACATCAAATTTGTGCTTTGTTTAATGGCCGAAGGAATGATGGTGGGCAAGCTGAATATACTTGCCCTAATTGTTATATACAAGAGGTTGAAAGGGGAGAGCGTAAACCTTTACCACAGAGTGCTGTTCTCGGGGCCAAAGATTTGCCGAAGACAATACTAAGCGACCACATAGAGCAACGGTTATTTAAGAAACTGAAGGTGGAAAGACAAGAGAGGGCGAGGCAGCAAGGAAAGAGTTATGATGAGGTTCCTGGGGCAGAATCGCTTGTAATCAGGGTTGTTTCATCGGTTGACAAAAAATTGGAAGTAAAGCAGCGGTTTCTTGAAATTTTTCAGGAAGAAAATTATCCAACAGAGTTCCCATATAAATCTAAGGTTGTATTGTTGTTTCAGAAAATTGAAGGTGTAGAAGTATGCCTATTTGGCATGTATGTTCAAGAATTTGGAGCTGAAAGCCAGTTTCCGAATCAGCGCCGTGTATATCTATCGTACTTGGATTCTGTTAAGTATTTCAGGCCCGAGGTTAAAGCGGTGACGGGAGAGGCTCTCCGCACTTATGTTTATCATGAAATTCTGATTGGGTACCTTGAATATTGCAAGCTACGAGGGTTTACAAGCTGCTATATATGGGCTTGCCCTCCGTTGAAGGGTGAAGATTATATTCTATATTGTCATCCGGAGATTCAGAAAACACCAAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCTGCCAAGGAGGGCATTGTTGCTGAACTCACTAATCTATATGACCATTTCTTTGTAACCACAGCTGAATGCAAGGCCAAAGTCACTGCAGCTAGGCTGCCCTATTTTGATGGTGACTACTGGCCTGGTGCAGCCGAGGATCTGATTTATCAGATGCGTCAAGAAGAGGACGGGAGAAAACAGAATAAGAAAGGATCGACCAAAAAGACTATAACAAAAAGGGCTCTAAAAGCATCTGGTCAAACTGATCTTTCTGCTAATGCGTCAAAGGATCTGCTTCTAATGCACAAACTTGGTGAAACCATTTCGCCAATGAAGGAGGATTTCATCATGGTTCATTTGCAGTACGCATGCTCTCACTGTTGTATACTAATGGTATCAGGAAACCGTTGGTCCTGCACTCAATGCAGAAATTTTCAGCTTTGTGATAAGTGTTATGAAGCAGAGCAAAAACGGGAAGAAAGAGAGAGGCACCCTATCAATCAGAGGGAAAAGCATGAATTGCGTCCTTTTCAAATTACTGATGTACCTGTGGATACAAAGGACAAAGATGAAATTCTTGAGAGTGAATTCTTTGACACCAGACAGGCATTTCTCAGCCTTTGTCAAGGGAATCACTATCAGTATGATACTTTACGGCGGGCTAAACATTCCTCTATGATGGTCCTTTACCATCTTCATAACCCGACTGCTCCTGCGTTTGTGACAACATGCAATATATGTCATCTCGACATTGAAACAGGTCAAGGCTGGCGTTGTGAAGTTTGCCCTGAATACGATGTATGCAATAACTGTTATCAGAAGGAAGGCGGTGTAGATCATCATCATAAATTGACAAATCATCCATCCATCGCTGATCGCGATGCACAAAACAAAGAAGCTAGGCAAATGCGAGTTGTACAGCTTCGGAAAATGCTTGATCTTTTGGTGCATGCATCACAGTGTCGTTCTGCACAATGTCAGTACCCCAATTGCCGCAAGGTGAAGGGACTTTTCCGCCATGGAATTCAATGCAAAGTCCGTGCATCTGGAGGATGCGTTCTCTGTAAGAAAATGTGGTATCTTCTTCAACTTCATGCTCGAGCTTGCAAAGTATCCGAGTGCCATGTGCCGCGTTGCAGAGATTTGAAGGAGCATTTGAGGAGACTGCAACAGCAGTCTGATTCAAGAAGAAGAGCCGCTGTGATGGAGATGATGAGACAGAGAGCTGCTGAGCTACACAACAGTTCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1748

Amino Acids

196.6

Weight (kDa)

8.58

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	687 - 756	4.7e-14	TAZ zinc finger
PHD	PF00628	1073 - 1113	9e-06	PHD-finger
HAT_KAT11	PF08214	1171 - 1398	1.7e-37	Histone acetylation protein
ZZ	PF00569	1449 - 1487	3e-06	Zinc finger, ZZ type
ZZ	PF00569	1571 - 1611	2.1e-06	Zinc finger, ZZ type
zf-TAZ	PF02135	1639 - 1709	1.2e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1226
AasI	GACNNNNNNGTC	2 cut(s)	19, 1201
Acc65I	GGTACC	1 cut(s)	3849
AccB1I	GGYRCC	4 cut(s)	553, 563, 3849, 4479
AccI	GTMKAC	2 cut(s)	850, 4375
AccII	CGCG	4 cut(s)	138, 2124, 4869, 5122
AccIII	TCCGGA	2 cut(s)	2887, 3943
AclI	AACGTT	1 cut(s)	329
AcoI	YGGCCR	3 cut(s)	1067, 2932, 3292
AcuI	CTGAAG	5 cut(s)	1926, 2373, 2454, 3246, 3482
AdeI	CACNNNGTG	1 cut(s)	3386
AfiI	CCNNNNNNNGG	5 cut(s)	437, 710, 1152, 2112, 3914
AflIII	ACRYGT	2 cut(s)	18, 660
AjiI	CACGTC	1 cut(s)	1986
AjnI	CCWGG	7 cut(s)	549, 709, 1881, 2550, 2565, 3517, 4132
AjuI	GAANNNNNNNTTGG	2 cut(s)	3828, 3860
AleI	CACNNNNGTG	1 cut(s)	1557
AloI	GAACNNNNNNTCC	4 cut(s)	2033, 2065, 5031, 5063
Alw21I	GWGCWC	4 cut(s)	78, 298, 1792, 3064
Ama87I	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
Aor13HI	TCCGGA	2 cut(s)	2887, 3943
AoxI	GGCC	9 cut(s)	128, 1067, 1209, 2932, 3292, 3399, 3782, 4083, 4130
ArsI	GACNNNNNNTTYG	2 cut(s)	4043, 4075
Asp700I	GAANNNNTTC	2 cut(s)	2048, 3597
Asp718I	GGTACC	1 cut(s)	3849
AspLEI	GCGC	5 cut(s)	140, 526, 2085, 3075, 3741
AspS9I	GGNCC	8 cut(s)	128, 1549, 2248, 3238, 3399, 3783, 4401, 4672
AsuC2I	CCSGG	1 cut(s)	438
AsuNHI	GCTAGC	1 cut(s)	689
AvaI	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
AvaII	GGWCC	5 cut(s)	1549, 2248, 3238, 4401, 4672
BaeGI	GKGCMC	4 cut(s)	48, 100, 175, 558
BaeI	ACNNNNGTAYC	2 cut(s)	4518, 4551
BalI	TGGCCA	1 cut(s)	2934
BamHI	GGATCC	1 cut(s)	154
BanI	GGYRCC	4 cut(s)	553, 563, 3849, 4479
BanII	GRGCYC	4 cut(s)	934, 1792, 2905, 4234
BarI	GAAGNNNNNNTAC	2 cut(s)	1675, 1707
BauI	CACGAG	1 cut(s)	3147
BbsI	GAAGAC	5 cut(s)	1932, 2388, 2414, 2442, 3422
Bbv12I	GWGCWC	4 cut(s)	78, 298, 1792, 3064
BceAI	ACGGC	3 cut(s)	831, 3726, 4661
BciT130I	CCWGG	7 cut(s)	551, 711, 1883, 2552, 2567, 3519, 4134
BciVI	GTATCC	2 cut(s)	4537, 5113
BclI	TGATCA	3 cut(s)	1054, 1288, 2227
BcnI	CCSGG	1 cut(s)	438
BfaI	CTAG	8 cut(s)	504, 690, 780, 1977, 2394, 3197, 4101, 4890
BfmI	CTRYAG	4 cut(s)	531, 1808, 2511, 4095
BfoI	RGCGCY	2 cut(s)	527, 3742
BfuI	GTATCC	2 cut(s)	4537, 5113
BglI	GCCNNNNNGGC	1 cut(s)	3690
BglII	AGATCT	1 cut(s)	590
BlpI	GCTNAGC	3 cut(s)	1656, 2748, 5220
BmcAI	AGTACT	2 cut(s)	514, 1806
Bme1390I	CCNGG	8 cut(s)	438, 551, 711, 1883, 2552, 2567, 3519, 4134
Bme18I	GGWCC	5 cut(s)	1549, 2248, 3238, 4401, 4672
BmeT110I	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
BmgBI	CACGTC	1 cut(s)	1986
BmgT120I	GGNCC	8 cut(s)	128, 1549, 2248, 3238, 3399, 3783, 4401, 4672
BmiI	GGNNCC	9 cut(s)	156, 555, 565, 2250, 3239, 3400, 3516, 3851, 4481
BmrFI	CCNGG	8 cut(s)	438, 551, 711, 1883, 2552, 2567, 3519, 4134
BmtI	GCTAGC	1 cut(s)	693
BpiI	GAAGAC	5 cut(s)	1932, 2388, 2414, 2442, 3422
BplI	GAGNNNNNCTC	6 cut(s)	1639, 1671, 2462, 2494, 3798, 3830
BpmI	CTGGAG	4 cut(s)	672, 1806, 1865, 5058
Bpu10I	CCTNAGC	1 cut(s)	4001
Bpu1102I	GCTNAGC	3 cut(s)	1656, 2748, 5220
BpuEI	CTTGAG	2 cut(s)	2585, 4589
BpuMI	CCSGG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	1642
BsaBI	GATNNNNATC	3 cut(s)	1059, 1893, 4830
BsaI	GGTCTC	1 cut(s)	2921
BsaWI	WCCGGW	2 cut(s)	2887, 3943
BsaXI	ACNNNNNCTCC	4 cut(s)	2033, 2063, 5031, 5061
Bsc4I	CCNNNNNNNGG	5 cut(s)	437, 710, 1152, 2112, 3914
Bse118I	RCCGGY	1 cut(s)	1069
Bse3DI	GCAATG	3 cut(s)	2973, 3082, 4002
Bse8I	GATNNNNATC	3 cut(s)	1059, 1893, 4830
BseAI	TCCGGA	2 cut(s)	2887, 3943
BseBI	CCWGG	7 cut(s)	551, 711, 1883, 2552, 2567, 3519, 4134
BseCI	ATCGAT	1 cut(s)	1642
BseJI	GATNNNNATC	3 cut(s)	1059, 1893, 4830
BseLI	CCNNNNNNNGG	5 cut(s)	437, 710, 1152, 2112, 3914
BseMI	GCAATG	3 cut(s)	2973, 3082, 4002
BseMII	CTCAG	9 cut(s)	77, 984, 1184, 1670, 1841, 2598, 2932, 4618, 5211
BseRI	GAGGAG	3 cut(s)	1678, 3233, 5164
BseSI	GKGCMC	4 cut(s)	48, 100, 175, 558
BseX3I	CGGCCG	1 cut(s)	1067
BseYI	CCCAGC	6 cut(s)	81, 228, 1254, 1470, 1710, 2251
BsgI	GTGCAG	6 cut(s)	29, 206, 3027, 4158, 4390, 4944
Bsh1236I	CGCG	4 cut(s)	138, 2124, 4869, 5122
Bsh1285I	CGRYCG	1 cut(s)	1070
BshFI	GGCC	9 cut(s)	130, 1069, 1211, 2934, 3294, 3401, 3784, 4085, 4132
BshNI	GGYRCC	4 cut(s)	553, 563, 3849, 4479
BshVI	ATCGAT	1 cut(s)	1642
BsiEI	CGRYCG	1 cut(s)	1070
BsiHKAI	GWGCWC	4 cut(s)	78, 298, 1792, 3064
BsiHKCI	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
BsiSI	CCGG	5 cut(s)	438, 1070, 2417, 2888, 3944
BslFI	GGGAC	4 cut(s)	314, 1977, 3187, 5010
BslI	CCNNNNNNNGG	5 cut(s)	437, 710, 1152, 2112, 3914
BsmBI	CGTCTC	1 cut(s)	1992
BsmFI	GGGAC	4 cut(s)	314, 1977, 3187, 5010
BsmI	GAATGC	2 cut(s)	1657, 4082
BsnI	GGCC	9 cut(s)	130, 1069, 1211, 2934, 3294, 3401, 3784, 4085, 4132
Bso31I	GGTCTC	1 cut(s)	2921
BsoBI	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
Bsp13I	TCCGGA	2 cut(s)	2887, 3943
Bsp1407I	TGTACA	2 cut(s)	1243, 4906
Bsp1720I	GCTNAGC	3 cut(s)	1656, 2748, 5220
Bsp19I	CCATGG	1 cut(s)	5008
Bsp68I	TCGCGA	2 cut(s)	2124, 4869
BspANI	GGCC	9 cut(s)	130, 1069, 1211, 2934, 3294, 3401, 3784, 4085, 4132
BspCNI	CTCAG	9 cut(s)	76, 985, 1183, 1669, 1840, 2599, 2931, 4617, 5212
BspDI	ATCGAT	1 cut(s)	1642
BspEI	TCCGGA	2 cut(s)	2887, 3943
BspFNI	CGCG	4 cut(s)	138, 2124, 4869, 5122
BspHI	TCATGA	1 cut(s)	3832
BspLI	GGNNCC	9 cut(s)	156, 555, 565, 2250, 3239, 3400, 3516, 3851, 4481
BspMAI	CTGCAG	3 cut(s)	1812, 2515, 4099
BspOI	GCTAGC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	5176
BspT107I	GGYRCC	4 cut(s)	553, 563, 3849, 4479
BspTNI	GGTCTC	1 cut(s)	2921
BsrDI	GCAATG	3 cut(s)	2973, 3082, 4002
BsrFI	RCCGGY	1 cut(s)	1069
BsrGI	TGTACA	2 cut(s)	1243, 4906
BssAI	RCCGGY	1 cut(s)	1069
BssNAI	GTATAC	2 cut(s)	851, 4376
BssSI	CACGAG	1 cut(s)	3147
BssT1I	CCWWGG	4 cut(s)	862, 1206, 4014, 5008
Bst1107I	GTATAC	2 cut(s)	851, 4376
Bst2BI	CACGAG	1 cut(s)	3147
Bst2UI	CCWGG	7 cut(s)	551, 711, 1883, 2552, 2567, 3519, 4134
Bst6I	CTCTTC	4 cut(s)	1033, 1696, 4167, 5176
BstAPI	GCANNNNNTGC	3 cut(s)	3054, 4413, 4510
BstAUI	TGTACA	2 cut(s)	1243, 4906
BstDSI	CCRYGG	1 cut(s)	5008
BstEII	GGTNACC	1 cut(s)	1430
BstFNI	CGCG	4 cut(s)	138, 2124, 4869, 5122
BstH2I	RGCGCY	2 cut(s)	527, 3742
BstHHI	GCGC	5 cut(s)	140, 526, 2085, 3075, 3741
BstMCI	CGRYCG	1 cut(s)	1070
BstNI	CCWGG	7 cut(s)	551, 711, 1883, 2552, 2567, 3519, 4134
BstPI	GGTNACC	1 cut(s)	1430
BstSCI	CCNGG	8 cut(s)	436, 549, 709, 1881, 2550, 2565, 3517, 4132
BstSFI	CTRYAG	4 cut(s)	531, 1808, 2511, 4095
BstSLI	GKGCMC	4 cut(s)	48, 100, 175, 558
BstUI	CGCG	4 cut(s)	138, 2124, 4869, 5122
BstV2I	GAAGAC	5 cut(s)	1932, 2388, 2414, 2442, 3422
BstX2I	RGATCY	7 cut(s)	59, 154, 590, 2021, 2562, 4147, 4279
BstXI	CCANNNNNNTGG	2 cut(s)	89, 2221
BstYI	RGATCY	7 cut(s)	59, 154, 590, 2021, 2562, 4147, 4279
BstZ17I	GTATAC	2 cut(s)	851, 4376
BstZI	CGGCCG	1 cut(s)	1067
Bsu15I	ATCGAT	1 cut(s)	1642
BsuI	GTATCC	2 cut(s)	4537, 5113
BsuRI	GGCC	9 cut(s)	130, 1069, 1211, 2934, 3294, 3401, 3784, 4085, 4132
BsuTUI	ATCGAT	1 cut(s)	1642
BtgI	CCRYGG	1 cut(s)	5008
BtgZI	GCGATG	2 cut(s)	4843, 4884
BtrI	CACGTC	1 cut(s)	1986
BtsI	GCAGTG	3 cut(s)	498, 2930, 4092
BtsIMutI	CAGTG	6 cut(s)	498, 558, 2930, 4092, 4366, 4955
BtuMI	TCGCGA	2 cut(s)	2124, 4869
CciI	TCATGA	1 cut(s)	3832
CfoI	GCGC	5 cut(s)	140, 526, 2085, 3075, 3741
Cfr10I	RCCGGY	1 cut(s)	1069
Cfr13I	GGNCC	8 cut(s)	128, 1549, 2248, 3238, 3399, 3783, 4401, 4672
ClaI	ATCGAT	1 cut(s)	1642
CseI	GACGC	4 cut(s)	2302, 4154, 4260, 4502
CsiI	ACCWGGT	1 cut(s)	549
CspCI	CAANNNNNGTGG	2 cut(s)	2048, 2083
DraIII	CACNNNGTG	1 cut(s)	3386
DrdI	GACNNNNNNGTC	2 cut(s)	19, 1201
DseDI	GACNNNNNNGTC	2 cut(s)	19, 1201
EaeI	YGGCCR	3 cut(s)	1067, 2932, 3292
EagI	CGGCCG	1 cut(s)	1067
Eam1104I	CTCTTC	4 cut(s)	1033, 1696, 4167, 5176
EarI	CTCTTC	4 cut(s)	1033, 1696, 4167, 5176
EciI	GGCGGA	1 cut(s)	4994
Ecl136II	GAGCTC	1 cut(s)	1790
EclXI	CGGCCG	1 cut(s)	1067
Eco130I	CCWWGG	4 cut(s)	862, 1206, 4014, 5008
Eco24I	GRGCYC	4 cut(s)	934, 1792, 2905, 4234
Eco31I	GGTCTC	1 cut(s)	2921
Eco32I	GATATC	1 cut(s)	1905
Eco47I	GGWCC	5 cut(s)	1549, 2248, 3238, 4401, 4672
Eco52I	CGGCCG	1 cut(s)	1067
Eco53kI	GAGCTC	1 cut(s)	1790
Eco57I	CTGAAG	5 cut(s)	1926, 2373, 2454, 3246, 3482
Eco88I	CYCGRG	4 cut(s)	297, 3395, 3785, 5088
Eco91I	GGTNACC	1 cut(s)	1430
EcoICRI	GAGCTC	1 cut(s)	1790
EcoO109I	RGGNCCY	1 cut(s)	2248
EcoO65I	GGTNACC	1 cut(s)	1430
EcoRI	GAATTC	5 cut(s)	745, 1180, 2344, 4577, 5013
EcoRII	CCWGG	7 cut(s)	549, 709, 1881, 2550, 2565, 3517, 4132
EcoRV	GATATC	1 cut(s)	1905
EcoT14I	CCWWGG	4 cut(s)	862, 1206, 4014, 5008
EcoT22I	ATGCAT	2 cut(s)	1611, 4945
EcoT38I	GRGCYC	4 cut(s)	934, 1792, 2905, 4234
ErhI	CCWWGG	4 cut(s)	862, 1206, 4014, 5008
Esp3I	CGTCTC	1 cut(s)	1992
FaqI	GGGAC	4 cut(s)	314, 1977, 3187, 5010
FauI	CCCGC	1 cut(s)	4641
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	3 cut(s)	1054, 1288, 2227
FblI	GTMKAC	2 cut(s)	850, 4375
FriOI	GRGCYC	4 cut(s)	934, 1792, 2905, 4234
FspBI	CTAG	8 cut(s)	504, 690, 780, 1977, 2394, 3197, 4101, 4890
GlaI	GCGC	5 cut(s)	139, 525, 2084, 3074, 3740
GsaI	CCCAGC	6 cut(s)	85, 232, 1258, 1474, 1714, 2255
GsuI	CTGGAG	4 cut(s)	672, 1806, 1865, 5058
HaeII	RGCGCY	2 cut(s)	527, 3742
HaeIII	GGCC	9 cut(s)	130, 1069, 1211, 2934, 3294, 3401, 3784, 4085, 4132
HapII	CCGG	5 cut(s)	438, 1070, 2417, 2888, 3944
HgaI	GACGC	4 cut(s)	2302, 4154, 4260, 4502
HhaI	GCGC	5 cut(s)	140, 526, 2085, 3075, 3741
Hin6I	GCGC	5 cut(s)	138, 524, 2083, 3073, 3739
HinP1I	GCGC	5 cut(s)	138, 524, 2083, 3073, 3739
HincII	GTYRAC	5 cut(s)	538, 1445, 1676, 1858, 3559
HindII	GTYRAC	5 cut(s)	538, 1445, 1676, 1858, 3559
HindIII	AAGCTT	4 cut(s)	2520, 3017, 3258, 3974
HpaII	CCGG	5 cut(s)	438, 1070, 2417, 2888, 3944
HpyCH4IV	ACGT	5 cut(s)	329, 1441, 1985, 2208, 3083
HpySE526I	ACGT	5 cut(s)	329, 1441, 1985, 2208, 3083
HspAI	GCGC	5 cut(s)	138, 524, 2083, 3073, 3739
Kpn2I	TCCGGA	2 cut(s)	2887, 3943
KpnI	GGTACC	1 cut(s)	3853
Ksp22I	TGATCA	3 cut(s)	1054, 1288, 2227
LguI	GCTCTTC	1 cut(s)	5176
LmnI	GCTCC	7 cut(s)	109, 1787, 2890, 2971, 3713, 4705, 5140
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	8 cut(s)	504, 690, 780, 1977, 2394, 3197, 4101, 4890
MaeII	ACGT	5 cut(s)	329, 1441, 1985, 2208, 3083
MfeI	CAATTG	3 cut(s)	1292, 1742, 4978
MflI	RGATCY	7 cut(s)	59, 154, 590, 2021, 2562, 4147, 4279
MlsI	TGGCCA	1 cut(s)	2934
MluNI	TGGCCA	1 cut(s)	2934
MlyI	GAGTC	4 cut(s)	346, 1763, 1852, 2741
MmeI	TCCRAC	2 cut(s)	171, 3641
Mox20I	TGGCCA	1 cut(s)	2934
Mph1103I	ATGCAT	2 cut(s)	1611, 4945
MroI	TCCGGA	2 cut(s)	2887, 3943
MroXI	GAANNNNTTC	2 cut(s)	2048, 3597
MscI	TGGCCA	1 cut(s)	2934
MslI	CAYNNNNRTG	5 cut(s)	831, 1557, 2709, 2799, 4948
Msp20I	TGGCCA	1 cut(s)	2934
MspA1I	CMGCKG	6 cut(s)	1066, 2738, 2828, 3583, 4073, 5189
MspI	CCGG	5 cut(s)	438, 1070, 2417, 2888, 3944
MspR9I	CCNGG	8 cut(s)	438, 551, 711, 1883, 2552, 2567, 3519, 4134
MunI	CAATTG	3 cut(s)	1292, 1742, 4978
Mva1269I	GAATGC	2 cut(s)	1657, 4082
MvaI	CCWGG	7 cut(s)	551, 711, 1883, 2552, 2567, 3519, 4134
MvnI	CGCG	4 cut(s)	138, 2124, 4869, 5122
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	5008
NdeI	CATATG	1 cut(s)	913
NheI	GCTAGC	1 cut(s)	689
NlaIV	GGNNCC	9 cut(s)	156, 555, 565, 2250, 3239, 3400, 3516, 3851, 4481
NmeAIII	GCCGAG	1 cut(s)	4168
NruI	TCGCGA	2 cut(s)	2124, 4869
NsiI	ATGCAT	2 cut(s)	1611, 4945
OliI	CACNNNNGTG	1 cut(s)	1557
PaeI	GCATGC	4 cut(s)	901, 2978, 4362, 4943
PaeR7I	CTCGAG	1 cut(s)	5088
PagI	TCATGA	1 cut(s)	3832
PasI	CCCWGGG	1 cut(s)	710
PciI	ACATGT	2 cut(s)	18, 660
PciSI	GCTCTTC	1 cut(s)	5176
PcsI	WCGNNNNNNNCGW	1 cut(s)	4866
PctI	GAATGC	2 cut(s)	1657, 4082
PdmI	GAANNNNTTC	2 cut(s)	2048, 3597
PfoI	TCCNGGA	2 cut(s)	1881, 2565
PleI	GAGTC	4 cut(s)	345, 1762, 1851, 2740
PpsI	GAGTC	4 cut(s)	345, 1762, 1851, 2740
PpuMI	RGGWCCY	1 cut(s)	2248
PscI	ACATGT	2 cut(s)	18, 660
PsiI	TTATAA	1 cut(s)	1226
Psp124BI	GAGCTC	1 cut(s)	1792
Psp1406I	AACGTT	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	2248
Psp6I	CCWGG	7 cut(s)	549, 709, 1881, 2550, 2565, 3517, 4132
PspEI	GGTNACC	1 cut(s)	1430
PspFI	CCCAGC	6 cut(s)	81, 228, 1254, 1470, 1710, 2251
PspGI	CCWGG	7 cut(s)	549, 709, 1881, 2550, 2565, 3517, 4132
PspN4I	GGNNCC	9 cut(s)	156, 555, 565, 2250, 3239, 3400, 3516, 3851, 4481
PspPI	GGNCC	8 cut(s)	128, 1549, 2248, 3238, 3399, 3783, 4401, 4672
PspPPI	RGGWCCY	1 cut(s)	2248
PspXI	VCTCGAGB	1 cut(s)	5088
PsrI	GAACNNNNNNTAC	2 cut(s)	2529, 2561
PstI	CTGCAG	3 cut(s)	1812, 2515, 4099
PsuI	RGATCY	7 cut(s)	59, 154, 590, 2021, 2562, 4147, 4279
PvuII	CAGCTG	2 cut(s)	2828, 4073
RruI	TCGCGA	2 cut(s)	2124, 4869
RseI	CAYNNNNRTG	5 cut(s)	831, 1557, 2709, 2799, 4948
SacI	GAGCTC	1 cut(s)	1792
SapI	GCTCTTC	1 cut(s)	5176
Sau96I	GGNCC	8 cut(s)	128, 1549, 2248, 3238, 3399, 3783, 4401, 4672
ScaI	AGTACT	2 cut(s)	514, 1806
SchI	GAGTC	4 cut(s)	346, 1763, 1852, 2741
ScrFI	CCNGG	8 cut(s)	438, 551, 711, 1883, 2552, 2567, 3519, 4134
SexAI	ACCWGGT	1 cut(s)	549
SfcI	CTRYAG	4 cut(s)	531, 1808, 2511, 4095
Sfr274I	CTCGAG	1 cut(s)	5088
SinI	GGWCC	5 cut(s)	1549, 2248, 3238, 4401, 4672
SlaI	CTCGAG	1 cut(s)	5088
SmiMI	CAYNNNNRTG	5 cut(s)	831, 1557, 2709, 2799, 4948
SmlI	CTYRAG	3 cut(s)	2600, 4568, 5088
SmoI	CTYRAG	3 cut(s)	2600, 4568, 5088
SphI	GCATGC	4 cut(s)	901, 2978, 4362, 4943
SspI	AATATT	2 cut(s)	1339, 3860
SspMI	CTAG	8 cut(s)	504, 690, 780, 1977, 2394, 3197, 4101, 4890
SstI	GAGCTC	1 cut(s)	1792
StyD4I	CCNGG	8 cut(s)	436, 549, 709, 1881, 2550, 2565, 3517, 4132
StyI	CCWWGG	4 cut(s)	862, 1206, 4014, 5008
TaiI	ACGT	5 cut(s)	332, 1444, 1988, 2211, 3086
TaqI	TCGA	7 cut(s)	1193, 1642, 1759, 2006, 4205, 4737, 5089
TatI	WGTACW	4 cut(s)	512, 1243, 1804, 4906
TauI	GCSGC	4 cut(s)	1069, 4986, 5122, 5189
TscAI	CASTG	6 cut(s)	505, 565, 2930, 4099, 4373, 4955
TspGWI	ACGGA	2 cut(s)	3897, 5018
TspRI	CASTG	6 cut(s)	505, 565, 2930, 4099, 4373, 4955
VpaK11BI	GGWCC	5 cut(s)	1549, 2248, 3238, 4401, 4672
XbaI	TCTAGA	1 cut(s)	1976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	5088
XmiI	GTMKAC	2 cut(s)	850, 4375
XmnI	GAANNNNTTC	2 cut(s)	2048, 3597
XspI	CTAG	8 cut(s)	504, 690, 780, 1977, 2394, 3197, 4101, 4890
ZrmI	AGTACT	2 cut(s)	514, 1806
Zsp2I	ATGCAT	2 cut(s)	1611, 4945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.