Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Reverse (-)

51824801 .. 51825469

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAATGCAGATCAAGAAGCCGAGCCAGGGTCGCCAAAAGATTGCAATCACCAAAATTCCCAACAGGAGTAATTTACAAGTCACATTCTCGAAACGTTGTGCAGGACTGTTCAAGAAGGCTAGTGAGCTCTGCACACTTTGTGGAGTTGAGATTGCAATAGTAGTCTTTTCTCCTTCCAACAAGCCCTTCTCTTTCGGCCATCCTAGCATTAAGACCCTCATCGGCCGCTTTCTTTCTCCAATCCCTTCATCATTTCCCAGTAGTACTCAACAAGCTCTGTACCCCAGGAAGGCTAGTGTTGAACATGAGCTCAACATGCAGCTAACCGGGACTCAAGGCCGACTGGAGGCTGAGAAAAAGCGAGGGGAAGAGCTTGACAAGATGAGTAAAGACAGCCAGCGATCGAGTCATTGTTGGTGGGATAAGCCAATTGAGGAACTTGGATTGGATGAGCTCCAGATGTTGAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGATTGAACAAATCCACAAAATAAATGGTCCTGCCAAATTTTCAGTACCATTCTCTGTGATGAATCTTGATCATCATCTTTCTGAGAGAAAGTTTGCTGAGATTAATGGATGTCATGGTTCCATGATCCCTTCTTGTGCCTATGGCTATGGACATGGTTCTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

222

Amino Acids

24.84

Weight (kDa)

9.3

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 66	1.5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	229
AclI	AACGTT	1 cut(s)	97
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	2 cut(s)	199, 226
AcsI	RAATTY	2 cut(s)	57, 536
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	268, 284, 546
AfiI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
AgsI	TTSAA	4 cut(s)	115, 305, 469, 506
AjnI	CCWGG	2 cut(s)	27, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	7 cut(s)	130, 278, 313, 325, 376, 457, 487
AluI	AGCT	7 cut(s)	130, 278, 313, 325, 376, 457, 487
Alw21I	GWGCWC	4 cut(s)	132, 315, 459, 489
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	3 cut(s)	199, 226, 340
ApeKI	GCWGC	2 cut(s)	322, 473
ApoI	RAATTY	2 cut(s)	57, 536
AseI	ATTAAT	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	527
BanII	GRGCYC	4 cut(s)	132, 315, 459, 489
Bbv12I	GWGCWC	4 cut(s)	132, 315, 459, 489
BbvI	GCAGC	2 cut(s)	334, 460
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	29, 289
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	3 cut(s)	123, 207, 297
BisI	GCNGC	3 cut(s)	229, 323, 474
BlsI	GCNGC	3 cut(s)	230, 324, 475
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	3 cut(s)	29, 289, 331
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	3 cut(s)	29, 289, 331
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	368, 443
BpuEI	CTTGAG	2 cut(s)	321, 473
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	47, 573
BsaJI	CCNNGG	2 cut(s)	28, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 292, 349
Bse1I	ACTGG	2 cut(s)	261, 351
Bse3DI	GCAATG	2 cut(s)	12, 483
Bse8I	GATNNNNATC	2 cut(s)	47, 573
BseBI	CCWGG	2 cut(s)	29, 289
BseDI	CCNNGG	2 cut(s)	28, 287
BseGI	GGATG	3 cut(s)	202, 457, 614
BseJI	GATNNNNATC	2 cut(s)	47, 573
BseLI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
BseMI	GCAATG	2 cut(s)	12, 483
BseMII	CTCAG	3 cut(s)	345, 573, 588
BseNI	ACTGG	2 cut(s)	261, 351
BseRI	GAGGAG	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	334, 460
BsgI	GTGCAG	2 cut(s)	118, 123
Bsh1285I	CGRYCG	2 cut(s)	229, 407
BshFI	GGCC	3 cut(s)	201, 228, 342
BsiEI	CGRYCG	2 cut(s)	229, 407
BsiHKAI	GWGCWC	4 cut(s)	132, 315, 459, 489
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	29, 292, 349
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	3 cut(s)	201, 228, 342
Bsp1286I	GDGCHC	4 cut(s)	132, 315, 459, 489
Bsp143I	GATC	4 cut(s)	12, 404, 568, 624
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	3 cut(s)	201, 228, 342
BspCNI	CTCAG	3 cut(s)	346, 574, 589
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	619
BspQI	GCTCTTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	12, 483
BsrI	ACTGG	2 cut(s)	261, 351
BssECI	CCNNGG	2 cut(s)	28, 287
BssMI	GATC	4 cut(s)	12, 404, 568, 624
Bst2UI	CCWGG	2 cut(s)	29, 289
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	354, 582, 597
BstF5I	GGATG	3 cut(s)	202, 457, 614
BstKTI	GATC	4 cut(s)	15, 407, 571, 627
BstMBI	GATC	4 cut(s)	12, 404, 568, 624
BstMCI	CGRYCG	2 cut(s)	229, 407
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 207, 319
BstNI	CCWGG	2 cut(s)	29, 289
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	27, 287, 329
BstV1I	GCAGC	2 cut(s)	334, 460
BstZI	CGGCCG	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	201, 228, 342
BtsCI	GGATG	3 cut(s)	202, 457, 614
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	267, 283, 545
CviAII	CATG	5 cut(s)	308, 319, 614, 622, 653
CviQI	GTAC	3 cut(s)	267, 283, 545
DdeI	CTNAG	3 cut(s)	354, 582, 597
DpnI	GATC	4 cut(s)	14, 406, 570, 626
DpnII	GATC	4 cut(s)	12, 404, 568, 624
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	199, 226
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	4 cut(s)	130, 313, 457, 487
EclXI	CGGCCG	1 cut(s)	226
Eco24I	GRGCYC	4 cut(s)	132, 315, 459, 489
Eco47I	GGWCC	1 cut(s)	527
Eco52I	CGGCCG	1 cut(s)	226
Eco53kI	GAGCTC	4 cut(s)	130, 313, 457, 487
EcoICRI	GAGCTC	4 cut(s)	130, 313, 457, 487
EcoRII	CCWGG	2 cut(s)	27, 287
EcoT38I	GRGCYC	4 cut(s)	132, 315, 459, 489
FaeI	CATG	5 cut(s)	311, 322, 617, 625, 656
FaiI	YATR	7 cut(s)	309, 320, 615, 623, 642, 648, 654
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	5 cut(s)	307, 318, 613, 621, 652
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	229, 323, 474
FokI	GGATG	3 cut(s)	189, 464, 621
FriOI	GRGCYC	4 cut(s)	132, 315, 459, 489
Fsp4HI	GCNGC	3 cut(s)	229, 323, 474
FspBI	CTAG	3 cut(s)	123, 207, 297
GluI	GCNGC	3 cut(s)	229, 323, 474
GsuI	CTGGAG	2 cut(s)	368, 443
HaeIII	GGCC	3 cut(s)	201, 228, 342
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	5 cut(s)	311, 322, 617, 625, 656
HinfI	GANTC	3 cut(s)	334, 409, 562
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	6 cut(s)	16, 91, 115, 460, 490, 566
HpyAV	CCTTC	7 cut(s)	112, 186, 199, 258, 286, 463, 639
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	10, 47, 104, 135, 158, 322, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 207, 319
HpyF3I	CTNAG	3 cut(s)	354, 582, 597
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	5 cut(s)	311, 322, 617, 625, 656
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	4 cut(s)	12, 404, 568, 624
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	462, 484
Lsp1109I	GCAGC	2 cut(s)	334, 460
MaeI	CTAG	3 cut(s)	123, 207, 297
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	14, 406, 570, 626
MboI	GATC	4 cut(s)	12, 404, 568, 624
MboII	GAAGA	2 cut(s)	383, 505
MfeI	CAATTG	1 cut(s)	432
MhlI	GDGCHC	4 cut(s)	132, 315, 459, 489
MluCI	AATT	4 cut(s)	57, 73, 432, 536
MlyI	GAGTC	2 cut(s)	328, 418
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	230, 343, 359, 430, 475
MseI	TTAA	2 cut(s)	213, 603
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	3 cut(s)	29, 289, 331
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	29, 289
MwoI	GCNNNNNNNGC	3 cut(s)	33, 207, 319
NciI	CCSGG	1 cut(s)	331
NdeII	GATC	4 cut(s)	12, 404, 568, 624
NlaIII	CATG	5 cut(s)	311, 322, 617, 625, 656
NlaIV	GGNNCC	1 cut(s)	619
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	230, 324, 475
Ple19I	CGATCG	1 cut(s)	407
PleI	GAGTC	2 cut(s)	328, 417
PpsI	GAGTC	2 cut(s)	328, 417
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	4 cut(s)	132, 315, 459, 489
Psp1406I	AACGTT	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	27, 287
PspGI	CCWGG	2 cut(s)	27, 287
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	407
RsaI	GTAC	3 cut(s)	268, 284, 546
RsaNI	GTAC	3 cut(s)	267, 283, 545
SacI	GAGCTC	4 cut(s)	132, 315, 459, 489
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	213, 603
SatI	GCNGC	3 cut(s)	229, 323, 474
Sau3AI	GATC	4 cut(s)	12, 404, 568, 624
Sau96I	GGNCC	1 cut(s)	527
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	2 cut(s)	328, 418
ScrFI	CCNGG	3 cut(s)	29, 289, 331
SduI	GDGCHC	4 cut(s)	132, 315, 459, 489
SetI	ASST	8 cut(s)	100, 132, 280, 315, 327, 378, 459, 489
SinI	GGWCC	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	336, 488
SmoI	CTYRAG	2 cut(s)	336, 488
Sse9I	AATT	4 cut(s)	57, 73, 432, 536
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	3 cut(s)	123, 207, 297
SstI	GAGCTC	4 cut(s)	132, 315, 459, 489
StyD4I	CCNGG	3 cut(s)	27, 287, 329
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	92, 407
TasI	AATT	4 cut(s)	57, 73, 432, 536
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	213, 603
Tru9I	TTAA	2 cut(s)	213, 603
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	322, 473
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	240, 575
VpaK11BI	GGWCC	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	2 cut(s)	57, 536
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	3 cut(s)	123, 207, 297
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.