Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

62534947 .. 62545363

Gene Structure 10417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5151 bp

ATGAATGCACAGGCGCATATGTCTGGACAAATCTCTGGGCAGGTGCCCAATCAGACAGGTTCTCAGTTGCCTGTACTGCCCCAACATAACGGAAATGCCATTCCTCCCCAAATGCAAAATGTAGGCGGGCCACCTCGTGTGATCAACACTTTGGACCCCGAGCTTGTTAGAGCTCGTCACTTTATGCAGGAGAAGATCTGTCGTGTTATACAGCAGCGGCAACTTCCCCAGCCAATGAATGAAAAGAAGTTTAGGGATATTGTTAAACGCTTGGAGGAGGGTTTGTTGAGATCAGCTGTCAACAAGGAGGACTATATGAACCTGGACACATTAGAGAGCCGTTTGCATAATCTGATCAAGCGTCCTCCTCAGACCAACCAGAGCCAACAGTATCCGCAGCTTGTTAATTCTTCCTCTCCTGTTGGTACGATGATACCGACCCCTGGCATGTCACACAGTGGGAACTCAAATATGATGGTTACTTCTTCCATGGACGCTTCTATGATCAATACTGGTGGAACTACTAGCATACCACCCACAACGGTCAGCACAGGAAACATGTTGCCAGGTGGTGGCTTACATGGTTCGTTTAATAGAGCTGATGGTTCTATGTCTAATGGATATCAGCAGTCTCCTGCCAATTTCTCCATTGGTTCTGGAGGAAACATGTCGTCGATGGGTGCACAAAGAATTGCAAGCCAAATGATTCCCACTCCTGGGTTTAATAACAGTGGTAACCAATCTTACATGAATTTGGAATCCTCTAATAACAGTGGTGGGTTCTCTACTGTTGATTCTTCAATGGTAACGCAACCGCAACAGCAAAAGCAGCATATTGGTAGTCAAAACAGCCGTATGCTTCATAACCTTGGCAGCCAAGGGAGTAGTGGAATGAGGTCCAGCTTGCAGCAGAAATCGTATGGGATGTCAAATGGGTCTATAAATGGTGGAATGGGAATGATTGCAAACAATTTACCAATTGTTAATGAAACTGGCATTTCGGATAGCTATCTGACCCCCACAACTTATGCCAATTCTTCCAAACCCTTACAGCAACACTTTGATCCACATCAGCGGCCTGTAATGCAAGGTGATGGCTACGGCATAAACAATGCTGATTCTTTTGGGTCTGGAAATTACTATGGTGCACCGGCTTCTGGGTCAATGATGAATCCTCAAAATTTGAATTCAGTGAGCATGACACCTATATCCAAGACCAGCTCTCCCCTTATAAGTAATCAGTCCAATATGCATACTCAACAACAAAGTCTTCATGTGAAGCCTCAACAATTTGATCAATTGGAAAAGATGAGTTTCCAAAATTCTTCAAGAGACAATATGCTCCAATCTCATCAGCACCAGCAATTTCAGCAGCAACCCAATCAATTTCAACAGCAGCAGCAATTAGTTCACAACCAACGCCAACAGAAGCAGCAAAATCAGCAAGCCCAGCATTTGTCAACTAATGATGTTTTTGTTCAGTCTCCGATGACATCTGATTTAAGCAGTCAAGCAAAGCGTGATAATGAAGTTATGCACTCACAAACAGAACAGTTCCAAATGTCGGAGATGCATAATCAATACCATCAGCACTCTGCTGAAGATCGTTTGAGGAATACTCAGCATAACGCATCTGGTCAGCATGATCTCTCCTCTTCATCGTCCCAAACTTCTCAGCAAATGCAACAAATGTTGCATCCTCACCAATTGATTGCAGAGACTCGAAATGATTTCAGTTCTCTTTCTGTTGGAGCTCAATCAGAATCAGCACTTCAGGGTCAATGGCGTCCTCAATTGCAAGATGGGAGTCACAGGCAGGTCCACATGTCACATGATCAGCATGTCCAAGAAGATTTCCGTCAGAGAATATCTGGGCAAGATGAAGCTCAGTGTAATAATCTTTCGTCAGAAGGACCTAATGTTAGTCAAACTGTTGCCTCTAGAAGCACATCTCATCCCCAGAATCAGGATCGGTTCAGAAATCAACAGAGATGGCTTTTGTTCTTGCGCCATGCTCGTAAATGTCCATCTTCTGAAGGGAAATGTAAAGAATCTCATTGTTTAACAGCGCAAAAGTTGTTGAAACATATTGAAATATGCATGTCATTCCAATGCGCATATCCTTACTGTCCTCGTACCAAGAAGTTGCTTCATCATCACAAGAGTTGCTCGGATTCAGCTTGCCCAGTTTGTGTTCCTGTCAAGAATTATATTCAGACACATAATAAGGTGCAGACCCGTCTTGTTCCTGAATCTGGTGTTCAGAATGGATCTTGTAAAGCCTATGATAGTGTTGACACTTCTGCTACATTGATTTCTAAGATTCCTCCAGTTGCTGAAACTTCTGAAGAGCCGCAACCATCTATGAAACGCTTGAAGATAGAGCAGTCCTCTCAATCAATTGTTCCTGATTCTGTAAGTAATGCAGTAACAGCTTCTGCAATTAAAGAACCCCATGTATCCCAGGATACACAGATTCAGGATTACCAACAGAGTGAAATTTCTATGCCAATTAAATCTGAGTTTAAGGAAGTGAAAATAGAAGCTTCTTTAAGTTCACATGGGAATCTTGATGAGATGAAGGATAGTTTTGAGGAGAACTGCAATCAAAGGCAGGATAGTGTGCCTGCCCCTTATAATGAGCCTACTGGTTTAGCTAAGCAAGAAAGCATCAAACTTGAGAAAGAAATTGATCCAGCTAAACAAGAAAATGCTATGCAGACTGTGGAAAATCCAGCTGGAACCAAGTCTGGGAAGCCTAAAATAAAGGGCGTGTCATTGACTGAATTGTTCACTCCAGAGCAAGTTAGGGCACACATTACAGGTCTCAGACAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAACCAAGCAATGGAACATGCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAGCTTACGTTTGAACCACCGCCTATGTATTGTACACCTTGTGGTGCTCGTATAAAGCGCAATTCTATGTATTATACAATGGGGGCTGGTGACACACGGCATTATTTTTGTATTCCATGCTATAATGAGGCTCGTGGAGATACAATAATTGTTGATGGGACAGCCATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGATGAGGAAACAGAAGAATGGTGGGTCCAATGTGACAAGTGTGAAGCTTGGCAACATCAAATCTGTGCTTTGTTCAATGGCCGAAGAAATGATGGTGGACAAGCTGAGTACACTTGCCCTAATTGCTATATACATGAGGTTGAAAGGGGAGAGCGTAAGCCATTACCGCAGAGTGCTGTTTTGGGGGCCAAAGATTTGCCAAGGACAATACTCAGCGACCACATAGAGCAACGGTTATTTAAGAAACTAAAGGTGGAAAGACTAGAGAGGGCGAGACAGCAGGGGAAAAGTTATGATGAGGTTCCTGGAGCAGAATCACTTGTAATTAGAGTTGTGTCATCTGTCGACAAAAAATTGGAAGTAAAGCAGCGGTTTTTAGAAATATTTCAGGAAGACAATTATCCCACGGAGTTCCCATATAAATCTAAGGTTGTATTGCTGTTCCAGAAAATTGAAGGTGTAGAAGTATGCTTATTCGGCATGTATGTTCAAGAATTTGGAGCCGAATGTCAATTTCCAAATCAGCGCCGTGTTTATCTATCGTATTTGGATTCTGTTAAGTATTTCAGGCCTGAGGTTAAGGCGGTGACTGGAGAAGCTCTCCGTACATATGTTTACCATGAAATTCTAATTGGATACCTCGAATATTGCAAGCTACGAGGGTTTACAAGCTGCTATATTTGGGCATGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACACCGAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCCTCTAAGGAAAACATCGTAGTCGAGCTCACTAATTTATACGATCATTTCTTTGTAACTAATGGTGAAGGCAAGGCTAAGGTCACTGCAGCTAGGCTGCCCTACTTTGATGGTGACTACTGGCCCGGTGCTGCTGAGGATCTCATTTATCAAATGCGTCAAGATGAGGATGGGAGAAAACAGAATAAGAAAGGATCAACCAAAAAGACAATAACAAAAAGGGCTCTAAAAGCATCTGGGCAGACTGATCTCTCTGGTAACGCGTCAAAGGACCTGCTCCTAATGCACAAACTTGGTGAAACTATTAGCCCGATGAAGGAAGATTTCATCATGGTTCATTTGCAGCACGCATGCTCTCACTGCTGTGTACTAATGGTATCTGGAAAACGTTGGGCTTGCAATCAATGCAGATATTTTCAGCTATGTGATAAGTGTTATGAAGCAGAGCAGAAACGGGAAGAAAGGGAGAGGCACCCTATGAATATGAGGGATAAACATGACTTCCGTCCTTTTGACATCACTGATGTACCAGTGGATACGAAGGACAGAGATGAGATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCGTTTCTGAGTCTTTGTCAAGGGAATCATTATCAGTATGATACTTTACGGAGGGCTAAACATTCCTCTATGATGGTCCTTTACCATCTTCATAATCCAACGGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTCGACATTGAAGCAGGTCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATATGATGTGTGCAATAGTTGTTATCAGAAGGATGGTGGTGTCGATCATCATCATAAATTGACAAATCATCCATCCATCGCTGACCGTGATGCACAAAACAAGGAAGCTAGGCAAATGCGAGTTGTACAGCTTAGGAGAATGCTTGATCTTCTAGTGCACGCATCACAGTGTCGTTCTGCACAATGTATGTACCCCAATTGTCGCAAGGTCAAGGGACTTTTTCGCCATGGAATTCAATGTAAAGTTCGTGCATCTGGAGGTTGTGTTCTTTGTAAGAAAATGTGGTATCTCCTGCAACTTCATGCTCGAGCTTGCAAAGTATCGGAGTGCCATGTGCCTCGTTGCAGAGATCTAAAAGAACATTTGAGGAGGCTGCAGCAACAGTCTGATTCAAGGCGAAGAGCTGCCGTGATGGAGATGATGAGACAGAGAGCTGCCGAGATAAACAATTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1716

Amino Acids

194.12

Weight (kDa)

8.46

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	662 - 731	1.2e-15	TAZ zinc finger
PHD	PF00628	1043 - 1083	8.8e-06	PHD-finger
HAT_KAT11	PF08214	1141 - 1357	2.6e-38	Histone acetylation protein
ZZ	PF00569	1541 - 1581	8e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	1609 - 1679	1.9e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1232, 2637
AarI	CACCTGC	1 cut(s)	31
Acc16I	TGCGCA	1 cut(s)	2116
Acc36I	ACCTGC	4 cut(s)	31, 1807, 4200, 4649
AccB1I	GGYRCC	2 cut(s)	43, 4389
AccB7I	CCANNNNNTGG	2 cut(s)	572, 2878
AccI	GTMKAC	1 cut(s)	3468
AccII	CGCG	1 cut(s)	4181
AccIII	TCCGGA	1 cut(s)	3853
AclI	AACGTT	1 cut(s)	4306
AclWI	GGATC	6 cut(s)	1058, 1977, 2278, 2687, 4065, 4120
AcoI	YGGCCR	2 cut(s)	2842, 3202
AcuI	CTGAAG	4 cut(s)	1620, 1757, 2055, 2367
AcyI	GRCGYC	1 cut(s)	1786
AdeI	CACNNNGTG	3 cut(s)	137, 458, 2966
AflIII	ACRYGT	4 cut(s)	558, 666, 1824, 4179
AjnI	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3427
AjuI	GAANNNNNNNTTGG	2 cut(s)	3738, 3770
AleI	CACNNNNGTG	1 cut(s)	4281
AloI	GAACNNNNNNTCC	2 cut(s)	4941, 4973
Alw21I	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2974, 3948, 4851
Alw26I	GTCTC	7 cut(s)	636, 1326, 1488, 1712, 2831, 3391, 5110
Alw44I	GTGCAC	3 cut(s)	681, 1146, 4847
AlwI	GGATC	6 cut(s)	1058, 1977, 2278, 2687, 4065, 4120
AlwNI	CAGNNNCTG	2 cut(s)	2336, 2438
Ama87I	CYCGRG	2 cut(s)	158, 4998
Aor13HI	TCCGGA	1 cut(s)	3853
AoxI	GGCC	7 cut(s)	128, 1076, 2842, 3202, 3309, 3692, 4040
ApaLI	GTGCAC	3 cut(s)	681, 1146, 4847
Asp700I	GAANNNNTTC	1 cut(s)	3507
AspLEI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2985, 3651
AsuC2I	CCSGG	1 cut(s)	4044
AsuHPI	GGTGA	8 cut(s)	1103, 1694, 3026, 3721, 3839, 3995, 4043, 4226
AvaI	CYCGRG	2 cut(s)	158, 4998
AvaII	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3148, 4189, 4582
AxyI	CCTNAGG	1 cut(s)	3696
BaeGI	GKGCMC	5 cut(s)	48, 685, 1150, 2815, 4851
BaeI	ACNNNNGTAYC	2 cut(s)	4428, 4461
BalI	TGGCCA	1 cut(s)	2844
BanI	GGYRCC	2 cut(s)	43, 4389
BanII	GRGCYC	4 cut(s)	175, 1756, 3948, 4144
BauI	CACGAG	2 cut(s)	135, 3057
BbsI	GAAGAC	2 cut(s)	1262, 3522
Bbv12I	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2974, 3948, 4851
BbvCI	CCTCAGC	1 cut(s)	4053
BceAI	ACGGC	7 cut(s)	324, 837, 1117, 3038, 3636, 4623, 5084
BciT130I	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3429
BciVI	GTATCC	5 cut(s)	402, 2461, 2470, 3752, 4447
BclI	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
BcnI	CCSGG	1 cut(s)	4044
BcoDI	GTCTC	7 cut(s)	636, 1326, 1488, 1712, 2831, 3391, 5110
BfaI	CTAG	8 cut(s)	525, 1941, 3107, 3386, 4011, 4500, 4800, 4844
BfmI	CTRYAG	2 cut(s)	4005, 5066
BfoI	RGCGCY	1 cut(s)	3652
BfuAI	ACCTGC	4 cut(s)	31, 1807, 4200, 4649
BfuI	GTATCC	5 cut(s)	402, 2461, 2470, 3752, 4447
BglII	AGATCT	2 cut(s)	195, 5041
BlpI	GCTNAGC	1 cut(s)	2658
Bme1390I	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3429, 4044
Bme18I	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3148, 4189, 4582
BmeT110I	CYCGRG	2 cut(s)	158, 4998
BmiI	GGNNCC	9 cut(s)	45, 156, 2743, 3149, 3310, 3426, 3625, 4391, 4611
BmrFI	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3429, 4044
BmrI	ACTGGG	1 cut(s)	2180
BmsI	GCATC	8 cut(s)	1560, 1640, 1705, 2679, 4160, 4771, 4862, 4952
BmuI	ACTGGG	1 cut(s)	2180
BoxI	GACNNNNGTC	1 cut(s)	4422
BpiI	GAAGAC	2 cut(s)	1262, 3522
BplI	GAGNNNNNCTC	6 cut(s)	1603, 1635, 2375, 2407, 3708, 3740
BpmI	CTGGAG	6 cut(s)	678, 2313, 2781, 3450, 3735, 4968
Bpu10I	CCTNAGC	4 cut(s)	3911, 3996, 4053, 4823
Bpu1102I	GCTNAGC	1 cut(s)	2658
BpuEI	CTTGAG	2 cut(s)	2699, 4499
BpuMI	CCSGG	1 cut(s)	4044
BsaBI	GATNNNNATC	3 cut(s)	1008, 1068, 4740
BsaHI	GRCGYC	1 cut(s)	1786
BsaI	GGTCTC	1 cut(s)	2831
BsaJI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3323, 3528, 4918
BsaWI	WCCGGW	1 cut(s)	3853
BsaXI	ACNNNNNCTCC	6 cut(s)	269, 299, 1207, 1237, 4941, 4971
Bse118I	RCCGGY	1 cut(s)	1150
Bse1I	ACTGG	8 cut(s)	517, 997, 2186, 2330, 2653, 3718, 4043, 4448
Bse21I	CCTNAGG	1 cut(s)	3696
Bse3DI	GCAATG	3 cut(s)	2883, 2895, 3912
Bse8I	GATNNNNATC	3 cut(s)	1008, 1068, 4740
BseAI	TCCGGA	1 cut(s)	3853
BseBI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3429
BseDI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3323, 3528, 4918
BseGI	GGATG	8 cut(s)	930, 1696, 1954, 3850, 4093, 4729, 4759, 4763
BseJI	GATNNNNATC	3 cut(s)	1008, 1068, 4740
BseMI	GCAATG	3 cut(s)	2883, 2895, 3912
BseNI	ACTGG	8 cut(s)	517, 997, 2186, 2330, 2653, 3718, 4043, 4448
BseRI	GAGGAG	5 cut(s)	290, 357, 1642, 2609, 5074
BseSI	GKGCMC	5 cut(s)	48, 685, 1150, 2815, 4851
BseYI	CCCAGC	2 cut(s)	228, 1449
BsgI	GTGCAG	3 cut(s)	2252, 2937, 4854
Bsh1236I	CGCG	1 cut(s)	4181
BshFI	GGCC	7 cut(s)	130, 1078, 2844, 3204, 3311, 3694, 4042
BshNI	GGYRCC	2 cut(s)	43, 4389
BsiHKAI	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2974, 3948, 4851
BsiHKCI	CYCGRG	2 cut(s)	158, 4998
BsiSI	CCGG	3 cut(s)	1151, 3854, 4044
BslFI	GGGAC	3 cut(s)	1648, 3097, 4920
BsmAI	GTCTC	7 cut(s)	636, 1326, 1488, 1712, 2831, 3391, 5110
BsmFI	GGGAC	3 cut(s)	1648, 3097, 4920
BsmI	GAATGC	2 cut(s)	10, 4836
BsnI	GGCC	7 cut(s)	130, 1078, 2844, 3204, 3311, 3694, 4042
Bso31I	GGTCTC	1 cut(s)	2831
BsoBI	CYCGRG	2 cut(s)	158, 4998
Bsp13I	TCCGGA	1 cut(s)	3853
Bsp1407I	TGTACA	2 cut(s)	2957, 4816
Bsp1720I	GCTNAGC	1 cut(s)	2658
Bsp19I	CCATGG	2 cut(s)	489, 4918
BspANI	GGCC	7 cut(s)	130, 1078, 2844, 3204, 3311, 3694, 4042
BspEI	TCCGGA	1 cut(s)	3853
BspFNI	CGCG	1 cut(s)	4181
BspLI	GGNNCC	9 cut(s)	45, 156, 2743, 3149, 3310, 3426, 3625, 4391, 4611
BspMAI	CTGCAG	2 cut(s)	4009, 5070
BspMI	ACCTGC	4 cut(s)	31, 1807, 4200, 4649
BspPI	GGATC	6 cut(s)	1058, 1977, 2278, 2687, 4065, 4120
BspQI	GCTCTTC	2 cut(s)	2343, 5086
BspT107I	GGYRCC	2 cut(s)	43, 4389
BspTNI	GGTCTC	1 cut(s)	2831
BsrDI	GCAATG	3 cut(s)	2883, 2895, 3912
BsrFI	RCCGGY	1 cut(s)	1150
BsrGI	TGTACA	2 cut(s)	2957, 4816
BsrI	ACTGG	8 cut(s)	517, 997, 2186, 2330, 2653, 3718, 4043, 4448
BssAI	RCCGGY	1 cut(s)	1150
BssECI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3323, 3528, 4918
BssNI	GRCGYC	1 cut(s)	1786
BssSI	CACGAG	2 cut(s)	135, 3057
BssT1I	CCWWGG	5 cut(s)	489, 868, 877, 3323, 4918
Bst2BI	CACGAG	2 cut(s)	135, 3057
Bst2UI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3429
Bst6I	CTCTTC	3 cut(s)	1660, 2343, 5086
BstACI	GRCGYC	1 cut(s)	1786
BstAPI	GCANNNNNTGC	1 cut(s)	4323
BstAUI	TGTACA	2 cut(s)	2957, 4816
BstDSI	CCRYGG	3 cut(s)	489, 3528, 4918
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	8 cut(s)	930, 1696, 1954, 3850, 4093, 4729, 4759, 4763
BstFNI	CGCG	1 cut(s)	4181
BstH2I	RGCGCY	1 cut(s)	3652
BstHHI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2985, 3651
BstMAI	GTCTC	7 cut(s)	636, 1326, 1488, 1712, 2831, 3391, 5110
BstNI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3429
BstPAI	GACNNNNGTC	1 cut(s)	4422
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	7 cut(s)	321, 442, 565, 715, 2463, 3427, 4042
BstSFI	CTRYAG	2 cut(s)	4005, 5066
BstSLI	GKGCMC	5 cut(s)	48, 685, 1150, 2815, 4851
BstUI	CGCG	1 cut(s)	4181
BstV2I	GAAGAC	2 cut(s)	1262, 3522
BstX2I	RGATCY	4 cut(s)	195, 2270, 4057, 5041
BstYI	RGATCY	4 cut(s)	195, 2270, 4057, 5041
Bsu36I	CCTNAGG	1 cut(s)	3696
BsuI	GTATCC	5 cut(s)	402, 2461, 2470, 3752, 4447
BsuRI	GGCC	7 cut(s)	130, 1078, 2844, 3204, 3311, 3694, 4042
BtgI	CCRYGG	3 cut(s)	489, 3528, 4918
BtgZI	GCGATG	1 cut(s)	4753
BtsCI	GGATG	8 cut(s)	930, 1696, 1954, 3850, 4093, 4729, 4759, 4763
BtsI	GCAGTG	2 cut(s)	4002, 4276
BveI	ACCTGC	4 cut(s)	31, 1807, 4200, 4649
CaiI	CAGNNNCTG	2 cut(s)	2336, 2438
CfoI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2985, 3651
Cfr10I	RCCGGY	1 cut(s)	1150
CseI	GACGC	5 cut(s)	350, 503, 1775, 4064, 4170
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
DraIII	CACNNNGTG	3 cut(s)	137, 458, 2966
EaeI	YGGCCR	2 cut(s)	2842, 3202
Eam1104I	CTCTTC	3 cut(s)	1660, 2343, 5086
EarI	CTCTTC	3 cut(s)	1660, 2343, 5086
Ecl136II	GAGCTC	3 cut(s)	173, 1754, 3946
Eco130I	CCWWGG	5 cut(s)	489, 868, 877, 3323, 4918
Eco147I	AGGCCT	1 cut(s)	3694
Eco24I	GRGCYC	4 cut(s)	175, 1756, 3948, 4144
Eco31I	GGTCTC	1 cut(s)	2831
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3148, 4189, 4582
Eco53kI	GAGCTC	3 cut(s)	173, 1754, 3946
Eco57I	CTGAAG	4 cut(s)	1620, 1757, 2055, 2367
Eco81I	CCTNAGG	1 cut(s)	3696
Eco88I	CYCGRG	2 cut(s)	158, 4998
Eco91I	GGTNACC	1 cut(s)	734
EcoICRI	GAGCTC	3 cut(s)	173, 1754, 3946
EcoO109I	RGGNCCY	2 cut(s)	1913, 4189
EcoO65I	GGTNACC	1 cut(s)	734
EcoRI	GAATTC	3 cut(s)	1186, 4487, 4923
EcoRII	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3427
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	5 cut(s)	489, 868, 877, 3323, 4918
EcoT22I	ATGCAT	3 cut(s)	1254, 1575, 2102
EcoT38I	GRGCYC	4 cut(s)	175, 1756, 3948, 4144
ErhI	CCWWGG	5 cut(s)	489, 868, 877, 3323, 4918
FaqI	GGGAC	3 cut(s)	1648, 3097, 4920
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	18, 3733
FbaI	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
FblI	GTMKAC	1 cut(s)	3468
FokI	GGATG	8 cut(s)	937, 1683, 1941, 3837, 4100, 4736, 4746, 4750
FriOI	GRGCYC	4 cut(s)	175, 1756, 3948, 4144
FspAI	RTGCGCAY	1 cut(s)	2116
FspBI	CTAG	8 cut(s)	525, 1941, 3107, 3386, 4011, 4500, 4800, 4844
FspI	TGCGCA	1 cut(s)	2116
GlaI	GCGC	6 cut(s)	15, 2009, 2070, 2116, 2984, 3650
GsaI	CCCAGC	2 cut(s)	232, 1453
GsuI	CTGGAG	6 cut(s)	678, 2313, 2781, 3450, 3735, 4968
HaeII	RGCGCY	1 cut(s)	3652
HaeIII	GGCC	7 cut(s)	130, 1078, 2844, 3204, 3311, 3694, 4042
HapII	CCGG	3 cut(s)	1151, 3854, 4044
HgaI	GACGC	5 cut(s)	350, 503, 1775, 4064, 4170
HhaI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2985, 3651
Hin1I	GRCGYC	1 cut(s)	1786
Hin6I	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2983, 3649
HinP1I	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2983, 3649
HincII	GTYRAC	4 cut(s)	301, 1461, 2296, 3469
HindII	GTYRAC	4 cut(s)	301, 1461, 2296, 3469
HindIII	AAGCTT	4 cut(s)	2544, 2927, 3168, 3884
HpaII	CCGG	3 cut(s)	1151, 3854, 4044
HphI	GGTGA	8 cut(s)	1103, 1694, 3026, 3721, 3839, 3995, 4043, 4226
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	9 cut(s)	1904, 2030, 2575, 3572, 3817, 3980, 4228, 4453, 4714
HpyCH4IV	ACGT	2 cut(s)	2933, 4306
HpySE526I	ACGT	2 cut(s)	2933, 4306
Hsp92I	GRCGYC	1 cut(s)	1786
HspAI	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2983, 3649
Kpn2I	TCCGGA	1 cut(s)	3853
Ksp22I	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
LguI	GCTCTTC	2 cut(s)	2343, 5086
LmnI	GCTCC	6 cut(s)	1347, 1751, 3431, 3623, 4200, 4615
LweI	GCATC	8 cut(s)	1560, 1640, 1705, 2679, 4160, 4771, 4862, 4952
MaeI	CTAG	8 cut(s)	525, 1941, 3107, 3386, 4011, 4500, 4800, 4844
MaeII	ACGT	2 cut(s)	2933, 4306
MfeI	CAATTG	6 cut(s)	978, 1298, 1706, 1793, 2400, 4888
MflI	RGATCY	4 cut(s)	195, 2270, 4057, 5041
MlsI	TGGCCA	1 cut(s)	2844
MluI	ACGCGT	1 cut(s)	4179
MluNI	TGGCCA	1 cut(s)	2844
MlyI	GAGTC	3 cut(s)	1714, 1816, 4525
MmeI	TCCRAC	3 cut(s)	1545, 1729, 4628
Mox20I	TGGCCA	1 cut(s)	2844
Mph1103I	ATGCAT	3 cut(s)	1254, 1575, 2102
MroI	TCCGGA	1 cut(s)	3853
MroXI	GAANNNNTTC	1 cut(s)	3507
MscI	TGGCCA	1 cut(s)	2844
MslI	CAYNNNNRTG	3 cut(s)	2110, 4281, 4858
Msp20I	TGGCCA	1 cut(s)	2844
MspA1I	CMGCKG	5 cut(s)	217, 296, 1075, 2738, 3493
MspI	CCGG	3 cut(s)	1151, 3854, 4044
MspR9I	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3429, 4044
MunI	CAATTG	6 cut(s)	978, 1298, 1706, 1793, 2400, 4888
Mva1269I	GAATGC	2 cut(s)	10, 4836
MvaI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3429
MvnI	CGCG	1 cut(s)	4181
NciI	CCSGG	1 cut(s)	4044
NcoI	CCATGG	2 cut(s)	489, 4918
NdeI	CATATG	2 cut(s)	18, 3733
NlaIV	GGNNCC	9 cut(s)	45, 156, 2743, 3149, 3310, 3426, 3625, 4391, 4611
NsbI	TGCGCA	1 cut(s)	2116
NsiI	ATGCAT	3 cut(s)	1254, 1575, 2102
OliI	CACNNNNGTG	1 cut(s)	4281
PaeI	GCATGC	1 cut(s)	4272
PaeR7I	CTCGAG	1 cut(s)	4998
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	3694
PciI	ACATGT	3 cut(s)	558, 666, 1824
PciSI	GCTCTTC	2 cut(s)	2343, 5086
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	2 cut(s)	10, 4836
PdmI	GAANNNNTTC	1 cut(s)	3507
PflMI	CCANNNNNTGG	2 cut(s)	572, 2878
PfoI	TCCNGGA	1 cut(s)	3427
PleI	GAGTC	3 cut(s)	1714, 1815, 4524
PpsI	GAGTC	3 cut(s)	1714, 1815, 4524
PpuMI	RGGWCCY	2 cut(s)	1913, 4189
PscI	ACATGT	3 cut(s)	558, 666, 1824
PshAI	GACNNNNGTC	1 cut(s)	4422
PsiI	TTATAA	2 cut(s)	1232, 2637
Psp124BI	GAGCTC	3 cut(s)	175, 1756, 3948
Psp1406I	AACGTT	1 cut(s)	4306
Psp5II	RGGWCCY	2 cut(s)	1913, 4189
Psp6I	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3427
PspEI	GGTNACC	1 cut(s)	734
PspFI	CCCAGC	2 cut(s)	228, 1449
PspGI	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3427
PspN4I	GGNNCC	9 cut(s)	45, 156, 2743, 3149, 3310, 3426, 3625, 4391, 4611
PspPPI	RGGWCCY	2 cut(s)	1913, 4189
PspXI	VCTCGAGB	1 cut(s)	4998
PstI	CTGCAG	2 cut(s)	4009, 5070
PstNI	CAGNNNCTG	2 cut(s)	2336, 2438
PsuI	RGATCY	4 cut(s)	195, 2270, 4057, 5041
PvuII	CAGCTG	2 cut(s)	296, 2738
RseI	CAYNNNNRTG	3 cut(s)	2110, 4281, 4858
SacI	GAGCTC	3 cut(s)	175, 1756, 3948
SalI	GTCGAC	1 cut(s)	3467
SapI	GCTCTTC	2 cut(s)	2343, 5086
SchI	GAGTC	3 cut(s)	1714, 1816, 4525
ScrFI	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3429, 4044
SfaNI	GCATC	8 cut(s)	1560, 1640, 1705, 2679, 4160, 4771, 4862, 4952
SfcI	CTRYAG	2 cut(s)	4005, 5066
Sfr274I	CTCGAG	1 cut(s)	4998
SinI	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3148, 4189, 4582
SlaI	CTCGAG	1 cut(s)	4998
SmiMI	CAYNNNNRTG	3 cut(s)	2110, 4281, 4858
SmlI	CTYRAG	3 cut(s)	2678, 4478, 4998
SmoI	CTYRAG	3 cut(s)	2678, 4478, 4998
SphI	GCATGC	1 cut(s)	4272
SseBI	AGGCCT	1 cut(s)	3694
SspI	AATATT	2 cut(s)	3507, 3770
SspMI	CTAG	8 cut(s)	525, 1941, 3107, 3386, 4011, 4500, 4800, 4844
SstI	GAGCTC	3 cut(s)	175, 1756, 3948
StuI	AGGCCT	1 cut(s)	3694
StyD4I	CCNGG	7 cut(s)	321, 442, 565, 715, 2463, 3427, 4042
StyI	CCWWGG	5 cut(s)	489, 868, 877, 3323, 4918
TaiI	ACGT	2 cut(s)	2936, 4309
TaqI	TCGA	8 cut(s)	674, 1723, 3468, 3765, 3942, 4647, 4734, 4999
TatI	WGTACW	5 cut(s)	73, 2957, 3231, 4285, 4816
TauI	GCSGC	3 cut(s)	220, 1078, 2356
TspGWI	ACGGA	6 cut(s)	105, 1847, 3545, 3716, 4412, 4570
Van91I	CCANNNNNTGG	2 cut(s)	572, 2878
VneI	GTGCAC	3 cut(s)	681, 1146, 4847
VpaK11BI	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3148, 4189, 4582
XbaI	TCTAGA	1 cut(s)	1940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XhoI	CTCGAG	1 cut(s)	4998
XmiI	GTMKAC	1 cut(s)	3468
XmnI	GAANNNNTTC	1 cut(s)	3507
XspI	CTAG	8 cut(s)	525, 1941, 3107, 3386, 4011, 4500, 4800, 4844
Zsp2I	ATGCAT	3 cut(s)	1254, 1575, 2102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.