Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

66017970 .. 66028295

Gene Structure 10326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51791

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5154 bp

ATGAATGCACAGGCGCATATGTCTGGACAAATCTCTGGGCAGGTGCCCAATCAGACAGGTTCTCAGTTGCCTGTACTGCCCCAACATAACGGAAATGCCATTCCTCCCCAAATGCAAAATGTAGGCGGGCCACCTCGTGTGATCAACACTTTGGACCCCGAGCTTGTTAGAGCTCGTCACTTTATGCAGGAGAAGATCTGTCGTGTTATACAGCAGCGGCAACTTCCCCAGCCAATGAATGAAAGGAAGTTTAGGGATATTGTTAAACGCTTGGAGGAGGGTTTGTTGAGATCAGCTGTCAACAAGGAGGACTATATGAACCTGGACACATTAGAGAGCCGTTTGCATAATCTGATCAAGCGTTCTCCTCAGACCAACCAGAGCCAACAGTATCCACAGCTTGTTAATTCTTCCTCTCCTGTTGGTACGATGATACCGACCCCTGGCATGTCACACAGTGGGAACTCAAATATGATGGTTACTTCTTCCATGGACGCTTCTATGATCAATACTGGTGGAACTACTAGCATACCACCCACAACGGTCAGCACAGGAAACATGTTGCCAGGTGGTGGCTTACATGGTTCGTTTAATAGAGCTGATGGTTCTATGTCTAATGGATATCAGCAGTCTCCTGCCAATTTCTCCATTGGTTCTGGAGGAAACATGTCGTCGATGGGTGCACAAAGAATTGCAAGCCAAATGATTCCCACTCCTGGGTTTAATAACAGTGGTAACCAATCTTACATGAATTTGGAATCCTCTAATAACAGTGCTGGGTTCTCTACTGTTGATTCTTCAATGGTAACGCAACCGCAACAGCAAAAGCAGCATATTGGTAGTCAAAACAGCCGTATGCTTCATAACCTTGGCAGCCAAGGGAGTAGTGGAATGAGGTCCGGCTTGCAGCAGAAATCGTATGGGATGTCAAATGGGTCTATAAATGGTGGAATGGGAATGATTGCAAACAATTTACCAATTGTTAATGAAACTGGCATTTCGGATAGCTATGTGACCCCCACAACTTATGCCAATTCTTCCAAACCCTTACAGCAACACTTTGATCCACATCAGCGGCCTGTAATGCAAGGTGATGGCTACGGCATAAACAATGCTGATTCTTTTGGGTCTGGAAATTACTATGGTGCACCGGCTTCTGGGTCAATGATGAATCCTCAAAATTTGAATTCAGTCAGCATGACACCTATATCCAAGACCAGCTCTCCCCTTATAAGTAATCAGTCCAATATGCATACTCAACAACAAAGTCTCCATGTGAAGCCTCAACAATTTGATCAATTGGAAAAGATGAGTTTCCAAAATTCTTCAAGAGACAATATGCTCCAATCTCATCAGCACCAGCAATTTCAGCAGCAACCCAATCAATTTCAACAGCAGCAGCAATTAGTTCACAACCAACGCCAACAGAAGCAGCAAAATCAGCAAGCCCAGCATTTGTCAACTAATGATGTTTTTGTTCAGTCTCCGATGACATCTGATTTAAGCAGTCAAGCAAAGCGTGATAATGAAGTTATGCACTCACAAACAGAACAGTTCCAAATGTCGGAGATGCATAATCAATACCATCAGCACTCTGCTGAAGATCGTTTGAGGAATACTCAGCATAACGCATCTGGTCAGCATGATCTCTCCTCTTCATCGTCCCAAACTTCTCAGCAAATGCAACAAATGTTGCATCCTCACCAATTGATTGCAGAGACTCGAAATGATTTCAGTTCTCTTTCTGTTGGAGCTCAATCAGAATCAGCACTTCAGGGTCAATGGCGTCCTCAATTGCAAGATGGGAGTCACAGGCAGGTCCACATGTCACATGATCAGCATGTCCAAGAAGATTTCCGTCAGAGAATATCTGGGCAAGATGAAGCTCAGTGTAATAATCTTTCGTCAGAAGGACCTAATGTTAGTCAAACTGTTGCCTCTAGAAGCACATCTCATCCCCAGAATCAGGATCGGTTCAGAAATCAACAGAGATGGCTTTTGTTCTTGCGCCATGCTCGTAAATGTCCATCTTCTGAAGGGAAATGTAAAGAATCTCATTGTTTAACAGCGCAAAAGTTGTTGAAACATATTGAAATATGCATGTCATTCCAATGCGCATATCCTTACTGTCCTCGTACCAAGAAGTTGCTTCATCATCACAAGAGTTGCTCGGATTCAGCTTGCCCAGTTTGTGTTCCTGTCAAGAATTATATTCAGACACATAATAAGGTGCAGACCCGTCTTGTTCCTGAATCTGGTGTTCAGAATGGATCTTGTAAAGCCTATGATAGTGTTGACACTTCTGCTACATTGATTTCTAAGATTCCTCCAGTTGCTGAAACTTCTGAAGAGCCGCAACCATCTATGAAACGCTTGAAGATAGAGCAGTCCTCTCAATCAATTATTCCTGATTCTGTAAGTAATGCAGTAACGGCTTCTGCAATTAAGGAACCCCATGTATCCCAGGATACACAGATTCAGGATTACCAACAGAGTGAAATTTCTATGCCAATTAAATCTGAGTTTAAGGAAGTGAAAATAGAAGCTTCTTTAAGTTCTGGACATGGGAATCTTGATGAGATGAAGGATAGTTTTGAGGAGAACTGCAATCAAAGGCAGGATAGTGTGCCTGCCCCTTATAATGAGCCTGCTGGTTTAGCTAAGCAAGAAAGCATCAAACTTGAGAAAGAAATTGATCCAGCTAAACAAGAAAATGCTATGCAGACTGTGGAAAATCCAGCTGGAACCAAGTCTGGGAAGCCTAAAATAAAGGGCGTGTCGTTGACTGAATTGTTCACTCCAGAGCAAGTTAGGGCACACATTACAGGTCTCAGACAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAACCAAGCAATGGAACATGCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAGCTTACGTTTGAACCACCGCCTATGTATTGTACACCTTGTGGTGCTCGTATAAAGCGCAATTCTATGTATTATACAATGGGGGCTGGTGACACACGGCATTATTTTTGTATTCCATGCTATAATGAGGCTCGTGGAGATACAATAATTGTTGATGGGACAGCCATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGATGAGGAAACAGAAGAATGGTGGGTCCAATGTGACAAGTGTGAAGCTTGGCAACATCAAATCTGTGCTTTGTTCAATGGCCGAAGAAATGATGGTGGACAAGCTGAGTACACTTGCCCTAATTGCTATATACATGAGGTTGAAAGGGGAGAGCGTAAGCCATTACCGCAGAGTGCTGTTTTGGGGGCCAAAGATTTGCCAAGGACAATACTCAGCGACCACATAGAGCAACGGTTATTTAAGAAACTAAAGGTGGAAAGACTAGAGAGGGCGAGACAGCAGGGAAAAAGTTATGATGAGGTTCCTGGAGCAGAATCACTTGTAATTAGAGTTGTGTCATCTGTCGACAAAAAATTGGAAGTAAAGCAGCGGTTTTTAGAAATATTTCAGGAAGACAATTATCCCACGGAGTTCCCATATAAATCTAAGGTTGTATTGCTGTTCCAGAAAATTGAAGGTGTAGAAGTATGCTTATTCGGCATGTATGTTCAAGAATTTGGAGCCGAATGTCAATTTCCAAATCAGCGCCGTGTTTATCTATCGTATTTGGATTCTGTTAAGTATTTTAGGCCTGAGGTTAAGGCGGTGACTGGAGAAGCTCTCCGCACATATGTTTACCATGAAATTCTAATTGGATACCTCGAATATTGCAAGCTACGTGGGTTTACAAGCTGCTATATTTGGGCATGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACACCGAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCCTCTAAGGAAAACATCGTAGTCGAGCTCACTAATTTATACGATCATTTCTTTGTAACTAATGGTGAAGGCAAGGCTAAGGTCACTGCAGCTAGGCTGCCCTACTTTGATGGTGACTACTGGCCCGGTGCTGCTGAGGATCTCATTTATCAAATGCGTCAAGATGAGGATGGGAGAAAACAGAATAAGAAAGGATCAACCAAAAAGACAATAACAAAAAGGGCTCTAAAAGCATCTGGGCAGACTGATCTCTCTGGTAACGCGTCAAAGGACCTGCTCCTAATGCACAAACTTGGTGAAACTATTAGCCCGATGAAGGAAGATTTCATCATGGTTCATTTGCAGCACGCATGCTCTCACTGCTGTGTACTAATGGTATCTGGAAAACGTTGGGCTTGCAATCAATGCAGATATTTTCAGCTATGTGATAAGTGTTATGAAGCAGAGCAGAAACGGGAAGAAAGGGAGAGACACCCTATCAATATGAGGGATAAACATGACTTCCGTCCTTTTGACATCACTGATGTACCAGTGGATACGAAGGACAGAGATGAGATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCGTTTCTGAGTCTTTGTCAAGGGAATCATTATCAGTATGATACTTTACGGAGGGCTAAACATTCCTCTATGATGGTCCTTTACCATCTTCATAATCCAACGGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTCGACATTGAAGCAGGTCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATATGATGTGTGCAATAGTTGTTATCAGAAGGATGGTGGTGTCGATCATCATCATAAATTGACAAATCATCCATCCATTGCTGACCGTGATGCACAAAACAAGGAAGCTAGGCAAATGCGAGTTGTACAGCTTAGGAGAATGCTTGATCTTCTAGTGCACGCATCACAATGTCGTTCTGCACAATGTATGTACCCCAATTGTCGCAAGGTCAAGGGACTTTTTCGCCATGGAATTCAATGTAAAGTTCGTGCATCTGGAGGTTGTGTTCTTTGTAAGAAAATGTGGTATCTCCTGCAACTTCATGCTCGAGCTTGCAAAGTATCTGAGTGCCATGTGCCTCGTTGCAGAGATCTAAAAGAACATTTGAGGAGGCTGCAGCAACAGTCTGATTCAAGGCGAAGAGCTGCCGTGATGGAGATGATGAGACAGAGAGCTGCCGAGATAAACAATTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1717

Amino Acids

194.14

Weight (kDa)

8.46

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	662 - 731	1.2e-15	TAZ zinc finger
PHD	PF00628	1044 - 1084	8.8e-06	PHD-finger
HAT_KAT11	PF08214	1142 - 1358	2.6e-38	Histone acetylation protein
ZZ	PF00569	1542 - 1582	8e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	1610 - 1680	1.9e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1232, 2640
AarI	CACCTGC	1 cut(s)	31
Acc16I	TGCGCA	1 cut(s)	2116
Acc36I	ACCTGC	4 cut(s)	31, 1807, 4203, 4652
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	2 cut(s)	572, 2881
AccI	GTMKAC	1 cut(s)	3471
AccII	CGCG	1 cut(s)	4184
AccIII	TCCGGA	1 cut(s)	3856
AclI	AACGTT	1 cut(s)	4309
AclWI	GGATC	6 cut(s)	1058, 1977, 2278, 2690, 4068, 4123
AcoI	YGGCCR	2 cut(s)	2845, 3205
AcuI	CTGAAG	4 cut(s)	1620, 1757, 2055, 2367
AcyI	GRCGYC	1 cut(s)	1786
AdeI	CACNNNGTG	3 cut(s)	137, 458, 2969
AfaI	GTAC	9 cut(s)	75, 427, 2137, 2962, 3236, 4290, 4449, 4821, 4886
AflIII	ACRYGT	4 cut(s)	558, 666, 1824, 4182
AjnI	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3430
AjuI	GAANNNNNNNTTGG	2 cut(s)	3741, 3773
AleI	CACNNNNGTG	1 cut(s)	4284
AloI	GAACNNNNNNTCC	2 cut(s)	4944, 4976
Alw21I	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2977, 3951, 4854
Alw26I	GTCTC	9 cut(s)	636, 1274, 1326, 1488, 1712, 2834, 3394, 4384, 5113
Alw44I	GTGCAC	3 cut(s)	681, 1146, 4850
AlwI	GGATC	6 cut(s)	1058, 1977, 2278, 2690, 4068, 4123
AlwNI	CAGNNNCTG	1 cut(s)	2336
Ama87I	CYCGRG	2 cut(s)	158, 5001
Aor13HI	TCCGGA	1 cut(s)	3856
AoxI	GGCC	7 cut(s)	128, 1076, 2845, 3205, 3312, 3695, 4043
ApaLI	GTGCAC	3 cut(s)	681, 1146, 4850
Asp700I	GAANNNNTTC	1 cut(s)	3510
AspLEI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2988, 3654
AsuC2I	CCSGG	1 cut(s)	4047
AsuHPI	GGTGA	8 cut(s)	1103, 1694, 3029, 3724, 3842, 3998, 4046, 4229
AvaI	CYCGRG	2 cut(s)	158, 5001
AvaII	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3151, 4192, 4585
AxyI	CCTNAGG	1 cut(s)	3699
BaeGI	GKGCMC	5 cut(s)	48, 685, 1150, 2818, 4854
BaeI	ACNNNNGTAYC	2 cut(s)	4431, 4464
BalI	TGGCCA	1 cut(s)	2847
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	4 cut(s)	175, 1756, 3951, 4147
BauI	CACGAG	2 cut(s)	135, 3060
BbsI	GAAGAC	1 cut(s)	3525
Bbv12I	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2977, 3951, 4854
BbvCI	CCTCAGC	1 cut(s)	4056
BceAI	ACGGC	8 cut(s)	324, 837, 1117, 2448, 3041, 3639, 4626, 5087
BciT130I	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3432
BciVI	GTATCC	5 cut(s)	402, 2461, 2470, 3755, 4450
BclI	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
BcnI	CCSGG	1 cut(s)	4047
BcoDI	GTCTC	9 cut(s)	636, 1274, 1326, 1488, 1712, 2834, 3394, 4384, 5113
BfaI	CTAG	8 cut(s)	525, 1941, 3110, 3389, 4014, 4503, 4803, 4847
BfmI	CTRYAG	2 cut(s)	4008, 5069
BfoI	RGCGCY	1 cut(s)	3655
BfuAI	ACCTGC	4 cut(s)	31, 1807, 4203, 4652
BfuI	GTATCC	5 cut(s)	402, 2461, 2470, 3755, 4450
BglII	AGATCT	2 cut(s)	195, 5044
BlpI	GCTNAGC	1 cut(s)	2661
Bme1390I	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3432, 4047
Bme18I	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3151, 4192, 4585
BmeT110I	CYCGRG	2 cut(s)	158, 5001
BmiI	GGNNCC	9 cut(s)	45, 156, 2451, 2746, 3152, 3313, 3429, 3628, 4614
BmrFI	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3432, 4047
BmrI	ACTGGG	1 cut(s)	2180
BmsI	GCATC	8 cut(s)	1560, 1640, 1705, 2682, 4163, 4774, 4865, 4955
BmuI	ACTGGG	1 cut(s)	2180
BoxI	GACNNNNGTC	1 cut(s)	4425
BpiI	GAAGAC	1 cut(s)	3525
BplI	GAGNNNNNCTC	6 cut(s)	1603, 1635, 2375, 2407, 3711, 3743
BpmI	CTGGAG	6 cut(s)	678, 2313, 2784, 3453, 3738, 4971
Bpu10I	CCTNAGC	4 cut(s)	3914, 3999, 4056, 4826
Bpu1102I	GCTNAGC	1 cut(s)	2661
BpuEI	CTTGAG	2 cut(s)	2702, 4502
BpuMI	CCSGG	1 cut(s)	4047
BsaAI	YACGTR	1 cut(s)	3785
BsaBI	GATNNNNATC	2 cut(s)	1068, 4743
BsaHI	GRCGYC	1 cut(s)	1786
BsaI	GGTCTC	1 cut(s)	2834
BsaJI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3326, 3531, 4921
BsaWI	WCCGGW	1 cut(s)	3856
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 1207, 1237, 1254, 1284, 4944, 4974
Bse118I	RCCGGY	1 cut(s)	1150
Bse1I	ACTGG	7 cut(s)	517, 997, 2186, 2330, 3721, 4046, 4451
Bse21I	CCTNAGG	1 cut(s)	3699
Bse3DI	GCAATG	4 cut(s)	2886, 2898, 3915, 4770
Bse8I	GATNNNNATC	2 cut(s)	1068, 4743
BseAI	TCCGGA	1 cut(s)	3856
BseBI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3432
BseDI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3326, 3531, 4921
BseGI	GGATG	8 cut(s)	930, 1696, 1954, 3853, 4096, 4732, 4762, 4766
BseJI	GATNNNNATC	2 cut(s)	1068, 4743
BseMI	GCAATG	4 cut(s)	2886, 2898, 3915, 4770
BseNI	ACTGG	7 cut(s)	517, 997, 2186, 2330, 3721, 4046, 4451
BseRI	GAGGAG	5 cut(s)	290, 357, 1642, 2612, 5077
BseSI	GKGCMC	5 cut(s)	48, 685, 1150, 2818, 4854
BseYI	CCCAGC	3 cut(s)	228, 776, 1449
BsgI	GTGCAG	3 cut(s)	2252, 2940, 4857
Bsh1236I	CGCG	1 cut(s)	4184
BshFI	GGCC	7 cut(s)	130, 1078, 2847, 3207, 3314, 3697, 4045
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	7 cut(s)	175, 685, 1150, 1756, 2977, 3951, 4854
BsiHKCI	CYCGRG	2 cut(s)	158, 5001
BsiSI	CCGG	4 cut(s)	900, 1151, 3857, 4047
BslFI	GGGAC	3 cut(s)	1648, 3100, 4923
BsmAI	GTCTC	9 cut(s)	636, 1274, 1326, 1488, 1712, 2834, 3394, 4384, 5113
BsmFI	GGGAC	3 cut(s)	1648, 3100, 4923
BsmI	GAATGC	2 cut(s)	10, 4839
BsnI	GGCC	7 cut(s)	130, 1078, 2847, 3207, 3314, 3697, 4045
Bso31I	GGTCTC	1 cut(s)	2834
BsoBI	CYCGRG	2 cut(s)	158, 5001
Bsp13I	TCCGGA	1 cut(s)	3856
Bsp1407I	TGTACA	2 cut(s)	2960, 4819
Bsp1720I	GCTNAGC	1 cut(s)	2661
Bsp19I	CCATGG	2 cut(s)	489, 4921
BspANI	GGCC	7 cut(s)	130, 1078, 2847, 3207, 3314, 3697, 4045
BspEI	TCCGGA	1 cut(s)	3856
BspFNI	CGCG	1 cut(s)	4184
BspLI	GGNNCC	9 cut(s)	45, 156, 2451, 2746, 3152, 3313, 3429, 3628, 4614
BspMAI	CTGCAG	2 cut(s)	4012, 5073
BspMI	ACCTGC	4 cut(s)	31, 1807, 4203, 4652
BspPI	GGATC	6 cut(s)	1058, 1977, 2278, 2690, 4068, 4123
BspQI	GCTCTTC	2 cut(s)	2343, 5089
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	2834
BsrDI	GCAATG	4 cut(s)	2886, 2898, 3915, 4770
BsrFI	RCCGGY	1 cut(s)	1150
BsrGI	TGTACA	2 cut(s)	2960, 4819
BsrI	ACTGG	7 cut(s)	517, 997, 2186, 2330, 3721, 4046, 4451
BssAI	RCCGGY	1 cut(s)	1150
BssECI	CCNNGG	9 cut(s)	442, 489, 716, 868, 877, 2463, 3326, 3531, 4921
BssNI	GRCGYC	1 cut(s)	1786
BssSI	CACGAG	2 cut(s)	135, 3060
BssT1I	CCWWGG	5 cut(s)	489, 868, 877, 3326, 4921
Bst2BI	CACGAG	2 cut(s)	135, 3060
Bst2UI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3432
Bst6I	CTCTTC	3 cut(s)	1660, 2343, 5089
BstACI	GRCGYC	1 cut(s)	1786
BstAPI	GCANNNNNTGC	1 cut(s)	4326
BstAUI	TGTACA	2 cut(s)	2960, 4819
BstBAI	YACGTR	1 cut(s)	3785
BstDSI	CCRYGG	3 cut(s)	489, 3531, 4921
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	8 cut(s)	930, 1696, 1954, 3853, 4096, 4732, 4762, 4766
BstFNI	CGCG	1 cut(s)	4184
BstH2I	RGCGCY	1 cut(s)	3655
BstHHI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2988, 3654
BstMAI	GTCTC	9 cut(s)	636, 1274, 1326, 1488, 1712, 2834, 3394, 4384, 5113
BstNI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3432
BstPAI	GACNNNNGTC	1 cut(s)	4425
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	7 cut(s)	321, 442, 565, 715, 2463, 3430, 4045
BstSFI	CTRYAG	2 cut(s)	4008, 5069
BstSLI	GKGCMC	5 cut(s)	48, 685, 1150, 2818, 4854
BstUI	CGCG	1 cut(s)	4184
BstV2I	GAAGAC	1 cut(s)	3525
BstX2I	RGATCY	4 cut(s)	195, 2270, 4060, 5044
BstYI	RGATCY	4 cut(s)	195, 2270, 4060, 5044
Bsu36I	CCTNAGG	1 cut(s)	3699
BsuI	GTATCC	5 cut(s)	402, 2461, 2470, 3755, 4450
BsuRI	GGCC	7 cut(s)	130, 1078, 2847, 3207, 3314, 3697, 4045
BtgI	CCRYGG	3 cut(s)	489, 3531, 4921
BtsCI	GGATG	8 cut(s)	930, 1696, 1954, 3853, 4096, 4732, 4762, 4766
BtsI	GCAGTG	2 cut(s)	4005, 4279
BtsIMutI	CAGTG	9 cut(s)	463, 736, 778, 1895, 2843, 4005, 4279, 4440, 4458
BveI	ACCTGC	4 cut(s)	31, 1807, 4203, 4652
CaiI	CAGNNNCTG	1 cut(s)	2336
CfoI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2988, 3654
Cfr10I	RCCGGY	1 cut(s)	1150
CseI	GACGC	4 cut(s)	503, 1775, 4067, 4173
Csp6I	GTAC	9 cut(s)	74, 426, 2136, 2961, 3235, 4289, 4448, 4820, 4885
CspCI	CAANNNNNGTGG	4 cut(s)	496, 531, 3766, 3801
CviQI	GTAC	9 cut(s)	74, 426, 2136, 2961, 3235, 4289, 4448, 4820, 4885
DraIII	CACNNNGTG	3 cut(s)	137, 458, 2969
EaeI	YGGCCR	2 cut(s)	2845, 3205
Eam1104I	CTCTTC	3 cut(s)	1660, 2343, 5089
EarI	CTCTTC	3 cut(s)	1660, 2343, 5089
Ecl136II	GAGCTC	3 cut(s)	173, 1754, 3949
Eco130I	CCWWGG	5 cut(s)	489, 868, 877, 3326, 4921
Eco147I	AGGCCT	1 cut(s)	3697
Eco24I	GRGCYC	4 cut(s)	175, 1756, 3951, 4147
Eco31I	GGTCTC	1 cut(s)	2834
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3151, 4192, 4585
Eco53kI	GAGCTC	3 cut(s)	173, 1754, 3949
Eco57I	CTGAAG	4 cut(s)	1620, 1757, 2055, 2367
Eco81I	CCTNAGG	1 cut(s)	3699
Eco88I	CYCGRG	2 cut(s)	158, 5001
Eco91I	GGTNACC	1 cut(s)	734
EcoICRI	GAGCTC	3 cut(s)	173, 1754, 3949
EcoO109I	RGGNCCY	2 cut(s)	1913, 4192
EcoO65I	GGTNACC	1 cut(s)	734
EcoRI	GAATTC	3 cut(s)	1186, 4490, 4926
EcoRII	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3430
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	5 cut(s)	489, 868, 877, 3326, 4921
EcoT22I	ATGCAT	3 cut(s)	1254, 1575, 2102
EcoT38I	GRGCYC	4 cut(s)	175, 1756, 3951, 4147
ErhI	CCWWGG	5 cut(s)	489, 868, 877, 3326, 4921
FaqI	GGGAC	3 cut(s)	1648, 3100, 4923
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	18, 3736
FbaI	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
FblI	GTMKAC	1 cut(s)	3471
FokI	GGATG	8 cut(s)	937, 1683, 1941, 3840, 4103, 4739, 4749, 4753
FriOI	GRGCYC	4 cut(s)	175, 1756, 3951, 4147
FspAI	RTGCGCAY	1 cut(s)	2116
FspBI	CTAG	8 cut(s)	525, 1941, 3110, 3389, 4014, 4503, 4803, 4847
FspI	TGCGCA	1 cut(s)	2116
GlaI	GCGC	6 cut(s)	15, 2009, 2070, 2116, 2987, 3653
GsaI	CCCAGC	3 cut(s)	232, 780, 1453
GsuI	CTGGAG	6 cut(s)	678, 2313, 2784, 3453, 3738, 4971
HaeII	RGCGCY	1 cut(s)	3655
HaeIII	GGCC	7 cut(s)	130, 1078, 2847, 3207, 3314, 3697, 4045
HapII	CCGG	4 cut(s)	900, 1151, 3857, 4047
HgaI	GACGC	4 cut(s)	503, 1775, 4067, 4173
HhaI	GCGC	6 cut(s)	16, 2010, 2071, 2117, 2988, 3654
Hin1I	GRCGYC	1 cut(s)	1786
Hin6I	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2986, 3652
HinP1I	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2986, 3652
HincII	GTYRAC	5 cut(s)	301, 1461, 2296, 2784, 3472
HindII	GTYRAC	5 cut(s)	301, 1461, 2296, 2784, 3472
HindIII	AAGCTT	4 cut(s)	2544, 2930, 3171, 3887
HpaII	CCGG	4 cut(s)	900, 1151, 3857, 4047
HphI	GGTGA	8 cut(s)	1103, 1694, 3029, 3724, 3842, 3998, 4046, 4229
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	9 cut(s)	1904, 2030, 2578, 3575, 3820, 3983, 4231, 4456, 4717
HpyCH4IV	ACGT	3 cut(s)	2936, 3784, 4309
HpySE526I	ACGT	3 cut(s)	2936, 3784, 4309
Hsp92I	GRCGYC	1 cut(s)	1786
HspAI	GCGC	6 cut(s)	14, 2008, 2069, 2115, 2986, 3652
Kpn2I	TCCGGA	1 cut(s)	3856
Ksp22I	TGATCA	5 cut(s)	141, 354, 504, 1294, 1834
LguI	GCTCTTC	2 cut(s)	2343, 5089
LmnI	GCTCC	6 cut(s)	1347, 1751, 3434, 3626, 4203, 4618
LweI	GCATC	8 cut(s)	1560, 1640, 1705, 2682, 4163, 4774, 4865, 4955
MaeI	CTAG	8 cut(s)	525, 1941, 3110, 3389, 4014, 4503, 4803, 4847
MaeII	ACGT	3 cut(s)	2936, 3784, 4309
MfeI	CAATTG	5 cut(s)	978, 1298, 1706, 1793, 4891
MflI	RGATCY	4 cut(s)	195, 2270, 4060, 5044
MlsI	TGGCCA	1 cut(s)	2847
MluI	ACGCGT	1 cut(s)	4182
MluNI	TGGCCA	1 cut(s)	2847
MlyI	GAGTC	3 cut(s)	1714, 1816, 4528
MmeI	TCCRAC	3 cut(s)	1545, 1729, 4631
Mox20I	TGGCCA	1 cut(s)	2847
Mph1103I	ATGCAT	3 cut(s)	1254, 1575, 2102
MroI	TCCGGA	1 cut(s)	3856
MroXI	GAANNNNTTC	1 cut(s)	3510
MscI	TGGCCA	1 cut(s)	2847
MslI	CAYNNNNRTG	3 cut(s)	2110, 4284, 4861
Msp20I	TGGCCA	1 cut(s)	2847
MspA1I	CMGCKG	5 cut(s)	217, 296, 1075, 2741, 3496
MspI	CCGG	4 cut(s)	900, 1151, 3857, 4047
MspR9I	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3432, 4047
MunI	CAATTG	5 cut(s)	978, 1298, 1706, 1793, 4891
Mva1269I	GAATGC	2 cut(s)	10, 4839
MvaI	CCWGG	6 cut(s)	323, 444, 567, 717, 2465, 3432
MvnI	CGCG	1 cut(s)	4184
NciI	CCSGG	1 cut(s)	4047
NcoI	CCATGG	2 cut(s)	489, 4921
NdeI	CATATG	2 cut(s)	18, 3736
NlaIV	GGNNCC	9 cut(s)	45, 156, 2451, 2746, 3152, 3313, 3429, 3628, 4614
NsbI	TGCGCA	1 cut(s)	2116
NsiI	ATGCAT	3 cut(s)	1254, 1575, 2102
OliI	CACNNNNGTG	1 cut(s)	4284
PaeI	GCATGC	1 cut(s)	4275
PaeR7I	CTCGAG	1 cut(s)	5001
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	3697
PciI	ACATGT	3 cut(s)	558, 666, 1824
PciSI	GCTCTTC	2 cut(s)	2343, 5089
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	2 cut(s)	10, 4839
PdmI	GAANNNNTTC	1 cut(s)	3510
PflMI	CCANNNNNTGG	2 cut(s)	572, 2881
PfoI	TCCNGGA	1 cut(s)	3430
PleI	GAGTC	3 cut(s)	1714, 1815, 4527
PpsI	GAGTC	3 cut(s)	1714, 1815, 4527
Ppu21I	YACGTR	1 cut(s)	3785
PpuMI	RGGWCCY	2 cut(s)	1913, 4192
PscI	ACATGT	3 cut(s)	558, 666, 1824
PshAI	GACNNNNGTC	1 cut(s)	4425
PsiI	TTATAA	2 cut(s)	1232, 2640
Psp124BI	GAGCTC	3 cut(s)	175, 1756, 3951
Psp1406I	AACGTT	1 cut(s)	4309
Psp5II	RGGWCCY	2 cut(s)	1913, 4192
Psp6I	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3430
PspEI	GGTNACC	1 cut(s)	734
PspFI	CCCAGC	3 cut(s)	228, 776, 1449
PspGI	CCWGG	6 cut(s)	321, 442, 565, 715, 2463, 3430
PspN4I	GGNNCC	9 cut(s)	45, 156, 2451, 2746, 3152, 3313, 3429, 3628, 4614
PspPPI	RGGWCCY	2 cut(s)	1913, 4192
PspXI	VCTCGAGB	1 cut(s)	5001
PstI	CTGCAG	2 cut(s)	4012, 5073
PstNI	CAGNNNCTG	1 cut(s)	2336
PsuI	RGATCY	4 cut(s)	195, 2270, 4060, 5044
PvuII	CAGCTG	2 cut(s)	296, 2741
RsaI	GTAC	9 cut(s)	75, 427, 2137, 2962, 3236, 4290, 4449, 4821, 4886
RsaNI	GTAC	9 cut(s)	74, 426, 2136, 2961, 3235, 4289, 4448, 4820, 4885
RseI	CAYNNNNRTG	3 cut(s)	2110, 4284, 4861
SacI	GAGCTC	3 cut(s)	175, 1756, 3951
SalI	GTCGAC	1 cut(s)	3470
SapI	GCTCTTC	2 cut(s)	2343, 5089
SchI	GAGTC	3 cut(s)	1714, 1816, 4528
ScrFI	CCNGG	7 cut(s)	323, 444, 567, 717, 2465, 3432, 4047
SfaNI	GCATC	8 cut(s)	1560, 1640, 1705, 2682, 4163, 4774, 4865, 4955
SfcI	CTRYAG	2 cut(s)	4008, 5069
Sfr274I	CTCGAG	1 cut(s)	5001
SinI	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3151, 4192, 4585
SlaI	CTCGAG	1 cut(s)	5001
SmiMI	CAYNNNNRTG	3 cut(s)	2110, 4284, 4861
SmlI	CTYRAG	3 cut(s)	2681, 4481, 5001
SmoI	CTYRAG	3 cut(s)	2681, 4481, 5001
SphI	GCATGC	1 cut(s)	4275
SseBI	AGGCCT	1 cut(s)	3697
SspI	AATATT	2 cut(s)	3510, 3773
SspMI	CTAG	8 cut(s)	525, 1941, 3110, 3389, 4014, 4503, 4803, 4847
SstI	GAGCTC	3 cut(s)	175, 1756, 3951
StuI	AGGCCT	1 cut(s)	3697
StyD4I	CCNGG	7 cut(s)	321, 442, 565, 715, 2463, 3430, 4045
StyI	CCWWGG	5 cut(s)	489, 868, 877, 3326, 4921
TaiI	ACGT	3 cut(s)	2939, 3787, 4312
TaqI	TCGA	8 cut(s)	674, 1723, 3471, 3768, 3945, 4650, 4737, 5002
TatI	WGTACW	5 cut(s)	73, 2960, 3234, 4288, 4819
TauI	GCSGC	3 cut(s)	220, 1078, 2356
TscAI	CASTG	9 cut(s)	463, 736, 778, 1895, 2843, 4012, 4286, 4447, 4458
TspGWI	ACGGA	5 cut(s)	105, 1847, 3548, 4415, 4573
TspRI	CASTG	9 cut(s)	463, 736, 778, 1895, 2843, 4012, 4286, 4447, 4458
Van91I	CCANNNNNTGG	2 cut(s)	572, 2881
VneI	GTGCAC	3 cut(s)	681, 1146, 4850
VpaK11BI	GGWCC	7 cut(s)	154, 897, 1819, 1913, 3151, 4192, 4585
XbaI	TCTAGA	1 cut(s)	1940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XhoI	CTCGAG	1 cut(s)	5001
XmiI	GTMKAC	1 cut(s)	3471
XmnI	GAANNNNTTC	1 cut(s)	3510
XspI	CTAG	8 cut(s)	525, 1941, 3110, 3389, 4014, 4503, 4803, 4847
Zsp2I	ATGCAT	3 cut(s)	1254, 1575, 2102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.