Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

63886377 .. 63895458

Gene Structure 9082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5241 bp

ATGAATGCACAGGCGCATATGTCGGGACAAATCTCTGGGCAGGTGCCTAATCAGACAGGTTCTCAGTTGCCTGTACTGCCCCAACATAACGGAAATGCCATTCCTCCCCAAATGCAAAATGTAGGCGGGCCACCTCGTGCGATCAACGTTATGGACCCCGAGCTTCTTAGAGCTCGTCAGTTTATGCAGGAGAAGATCTGTCGTGTTATACAGCAGCGGCAACTTCCCCAGCCAATGAATGAAAGAAAGTTTAGGGATATTGTTAAACGCTTGGAGGAGGGTTTGTTGAGATCAGCTGTCAACAAGGAGGACTATATGAACCTGGACACATTAGAGAGCCGTTTGCATAATCTGATCAAGCGTTCTCCTCAGACCAACCAGAGCCAACAGTATCCACAGCTTGTTAATTCTTCCTCTCCTGTTGGTACGATGATACCGACCCCTGGCATGTCACACAGTGGGAACTCAAATATGATGGTTACTTCTTCCATGGACGCTTCTATGATCAATACTGGTGGAACTACTAGCATACCACCCACAACAGTCAGCACAGGAAACATGTTGCCAGGTGGTGGCTTACATGGTTCTATGTCTAATGGATATCAGCAGTCTCCTGCCAATTTCTCCATTGGTTCTGGAGGAAACATGTCGTCGATGGGTGCACAAAGAATTGCAAGCCAAATGATTCCCACTCCTGGGTTTAATAACAGTGGTAACCAATCTTACATGAATTTGGAATCCTCTAATAACAGTGGTGGGTTCTCTACTGTTGATTCTTCACTGGTAACGCAACCGCAACAGCAAAAGCAGCATATTGGTAGTCAAAACAGCCGTATGCTTCATAACCTTGGCAGCCAAGGGAGTAGTGGAATGAGGTCCGGCTTGCAGCAGAAATCGTATGGGGTGTCAAATGGGTCTATAAATGGTGGAATGGGAATGATTGCAAACAATTTACCAATTGTTAATGAAACTGGCATTTCGGATAGCTATCTGACCCCCCCAGCTTATGCCAATTCTTCCAAACCCTTACAGCAACACTTTGATCCACATCAGCGGCCTGTGATGCAAGGTGATGGCTACGGCATAAACAATGCTGATTCTTTTGGGTCTGGAAATTACTATGGTGCACCGGCTTCTGGGTCAATGATGAATCCTCAAAATTTGAATTCAGTCAGCATGACACCTATATCCAAGACCAGCTCTCCCCTTATAAGTAATCAGTCCAATATGCATACTCAACAACAAAGTCTCCATGTGAAGCCTCAACAATTTGATCAATTGGAAAAGATGAGTTTCCAAAATTCTTCAAGAGACAATATGCTCCAATCTCATCAGCACCAGCAATTTCAGCAGCAACCCAATCAATTTCAACAGCAGCAACAATTAGTTCACAACCAACGCCAACAGAAGCAGCAAAATCAGCAAGCCCAGCATTTGTCAAGTAATGATGTTTTTGTTCAGTCTCCGATGACATCTGATTTAAGCAGTCAAGCAAAGCGTGATAATGAAGTTCTGCACTCACAAACAGAACAGTTCCAAATGTCGGAGATGCATAATCAGTACCATCAGCACTCTGCTGAAGATCGTTTGAGGAATACTCAGCATAACGCATCTGGTCAGCATGATCTCTCCTCTTCATCGTCCCAAACTTCTCAGCAAATGCAACAAATGTTGCATCCTCACCAATTGATTGCAGAGACTCGAAATGATTTCAGTTCTCTTTCTGTTGGAGCTCAATCAGAATCAGCACTTCAGGGTCAATGGCGTCCTCAATTGCAAGATGGGAGTCACAGGCAGGTCCACATGTCACATGATCAGCATGTCCAAGAAGATTTCCGTCAGAGAATATCTGGGCAAGATGAAGCTCAGTGTAATAATCTTTCTTCAGAAGGACCTAATGTTAGTCAAACTGTTGCCTCTAGAAGCACATCTCATCCCCAGAATCAGGATCGGTTCAGAAATCAACAGAGATGGCTTTTGTTCTTGCGCCATGCTCGTAAATGTCCATCTTCTGAAGGGAAATGTAAAGAATCTCATTGTTTAACAGCGCAAAAGTTGTTGAAACATATTGAAATATGCATGTCATTCCAATGCGCATATCCTTACTGTCCTCGTACCAAGAAGTTGCTTCATCATCACAAGAGTTGCTCGGATTCAGCTTGCCCAGTTTGTGTTCCTGTCAAGAATTATATTCAGACACATAATAAGGTGCAGACCCGTGTTGTTCCTGAATCTGGTGTTCAGAATGGATCTTGTAAAGCCTATGATAGTGTTGACACTTCTGCTACATTGATTTCTAAGATTCCTCCAGTTGCTGAAACTTCTGAAGAGCCACAACCATCTATGAAACGCTTGAAGATAGAGCAGTCCTCTCAATCTATTGTTCCTGATTCTGTAAGTAATGCAGTAACTGCAATTAAAGAACCCCATGTATCCCAGGATACACAGATTCAGGATTACCAACAGAGTGAAATTTCTATGCCAATTAAATCTGAGTTTAAGGAAGTGAAAATAGAAGCTTCTTTAAGTTCTGGACATGGGAATCTCGATGAGATGAAGGATAGTTTTGAGGAGAACAGCAATCAAAGGCAGGATAGTGTGCCTGCCCCTTATAATGAGCCTGCTGGTTTAGCTAAGCAAGAAAGCATCAAACTTGAGAAAGAAATTGATCCAGCTAAACAAGAAAATGCTATGCAGACTGTGGAAAATCCAGCTGGAACCAAGTCTGGGAAGCCTAAAATAAAGGGCGTGTCGTTGACTGAATTGTTCACTCCAGAGCAAGTTAGGGCACACATTACAGGTCTCAGACAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAACCAAGCAATGGAACATGCAATGAGTGAGAACTCCTGTCAGTTGTGTGCGGTAGAGAAGCTTACGTTTGAACCACCGCCTATGTATTGTACACCTTGTGGTGCTCGTATAAAGCGCAATTCTATGTATTATACAATGGGGGCTGGTGACACACGGCATTATTTTTGTATTCCATGCTATAATGAGGCTCGTGGAGATACAATAATTGTTGATGGGACTGCCATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGATGAGGAAACAGAAGAATGGTGGGTCCAATGTGACAAGTGTGAAGCTTGGCAACATCAAATCTGTGCTTTGTTCAATGGCCGAAGAAATGATGGTGGACAAGCAGAGTACACTTGCCCTAATTGCTATATACATGAGGTTGAAAGGGGAGAGCGTAAGCCATTACCGCAGAGTGCTGTTTTGGGGGCCAAAGATTTGCCGAGGACAATACTCAGCGACCACATAGAGCAACGGTTATTTAAGAAACTAAAGGTGGAAAGACTAGAGAGGGCAAGACAACAGGGGAAAAGTTATGATGAGGTTCCTGGAGCAGAATCACTTGTAATTAGAGTTGTGTCATCTGTCGACAAAAAATTGGAAGTAAAGCAGCGGTTTTTAGAAATATTTCAGGAAGACAATTATCCTACGGAGTTCCCATATAAATCTAAGGTTGTATTGCTGTTCCAGAAAATTGAAGGTGTAGAAGTATGCTTATTCGGCATGTATGTTCAAGAATTTGGAGCCGAATGTCAATTTCCAAATCAGCGCCGTGTTTATCTATCGTATTTGGATTCTGTTAAGTATTTCAGGCCTGAGGTTAAGGCGGTGACTGGAGAAGCTCTCCGTACATATGTTTACCATGAAATTCTAATTGGATACCTCGAATATTGCAAGCTACGAGGGTTTACAAGCTGCTACATTTGGGCATGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACACCGAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCCTCTAAGGAAAACATCGTAGTCGAGCTCACTAATTTATACGATCATTTCTTTGTAACTAATGGTGAAGGCAAGGCTAAGGTCACTGCAGCTAGGCTGCCCTACTTTGATGGTGACTACTGGCCCGGTGCTGCCGAGGATCTCATTTATCAAATGCGTCAAGATGAGGATGGGAGAAAACAGAATAAGAAAGGATCAACCAAAAAGACTATAACAAAAAGGGCTCTAAAAGCATCTGGGCAGACTGATCTCTCTGGTAACGCGTCAAAGGACCTGCTCCTAATGCACAAACTTGGTGAAACTATTAGCCCGATGAAGGAAGATTTCATCATGGTTCATTTGCAGCACGCATGCTCTCACTGCTGTGTACTGATGGTATCTGGAAAACGTTGGGCTTGCAACCAATGCAGATATTTTCAGCTATGTGATAAGTGTTATGAAGCAGAGCAGAAACGGGAAGAAAGGGAGAGACACCCTATGAATATGAGGGATAAACATGACTTCCGTCCTTTTGACATCACTGATGTACCAGTGGATACGAAGGACAGAGATGAGATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCGTTTTTGAGTCTTTGTCAAGGGAATCATTATCAGTACGATACTTTACGGAGGGCTAAACATTCCTCTATGATGGTCCTTTACCATCTTCATAATCCAACAGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTCGACATTGAAGCAGGTCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATATGATGTGTGCAATAGTTGTTATCAGAAGGATGGTGGTGTCGATCATCATCATAAATTGACAAATCATCCATCCATTGCTGACCGTGATGCACAAAACAAGGAAGCTAGGCAAATGCGAGTTGTACAGCTTAGGAGAATGCTTGATCTTCTAGTGCACGCATCACAATGTCGTTCTGCACAATGTATGTACCCCAATTGTCGCAAGGTCAAGGGACTTTTTCGCCATGGTATTCAATGTAAAGTTCGTGCATCTGGAGGTTGTGTTCTTTGTAAGAAAATGTGGTATCTCCTGCAACTTCATGCTCGAGCTTGCAAAGTATCTGAGTGCCATGTGCCTCGTTGCAGAGATCTAAAAGAACATTTGAGGAGGCTGCAGCAACAGTCTGATTCAAGGCGAAGAGCTGCCGTGATGGAGATGATGAGACAGAGAGCTGCCGAGATAAACAATTCTGGGGAACAATTCTTTGGTTCTTATCTCCTCGACTCAATCGTCCCCAAGAGAAGACACGCAAAAATGATCAACTCGAGCATGCCCTCTTCAACAGCTGCCAGCAATGCCCCGTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1747

Amino Acids

197.24

Weight (kDa)

8.56

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	655 - 724	1.2e-15	TAZ zinc finger
PHD	PF00628	1035 - 1075	9e-06	PHD-finger
HAT_KAT11	PF08214	1133 - 1349	2.6e-38	Histone acetylation protein
ZZ	PF00569	1533 - 1573	8.1e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	1601 - 1671	1.9e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1211, 2613
AarI	CACCTGC	1 cut(s)	31
AasI	GACNNNNNNGTC	1 cut(s)	5159
Acc16I	TGCGCA	1 cut(s)	2095
Acc36I	ACCTGC	4 cut(s)	31, 1786, 4176, 4625
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	2 cut(s)	572, 2854
AccI	GTMKAC	1 cut(s)	3444
AccII	CGCG	1 cut(s)	4157
AccIII	TCCGGA	1 cut(s)	3829
AciI	CCGC	9 cut(s)	126, 217, 794, 1054, 2894, 2921, 3266, 3469, 3683
AclI	AACGTT	2 cut(s)	147, 4282
AclWI	GGATC	6 cut(s)	1037, 1956, 2257, 2663, 4041, 4096
AcoI	YGGCCR	2 cut(s)	2818, 3178
AcsI	RAATTY	9 cut(s)	730, 1159, 1165, 1300, 2472, 3593, 3723, 3834, 4463
AcuI	CTGAAG	5 cut(s)	1599, 1736, 1869, 2034, 2346
AcyI	GRCGYC	1 cut(s)	1765
AdeI	CACNNNGTG	3 cut(s)	137, 458, 2942
AflIII	ACRYGT	4 cut(s)	558, 645, 1803, 4155
AjnI	CCWGG	6 cut(s)	321, 442, 565, 694, 2436, 3403
AjuI	GAANNNNNNNTTGG	4 cut(s)	3714, 3746, 5118, 5150
AleI	CACNNNNGTG	1 cut(s)	4257
AloI	GAACNNNNNNTCC	2 cut(s)	4917, 4949
Alw21I	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2950, 3924, 4827
Alw26I	GTCTC	8 cut(s)	615, 1253, 1305, 1467, 1691, 2807, 4357, 5086
Alw44I	GTGCAC	3 cut(s)	660, 1125, 4823
AlwI	GGATC	6 cut(s)	1037, 1956, 2257, 2663, 4041, 4096
AlwNI	CAGNNNCTG	3 cut(s)	2315, 2411, 4589
Ama87I	CYCGRG	3 cut(s)	158, 4974, 5194
Aor13HI	TCCGGA	1 cut(s)	3829
AoxI	GGCC	7 cut(s)	128, 1055, 2818, 3178, 3285, 3668, 4016
ApaLI	GTGCAC	3 cut(s)	660, 1125, 4823
ApoI	RAATTY	9 cut(s)	730, 1159, 1165, 1300, 2472, 3593, 3723, 3834, 4463
Asp700I	GAANNNNTTC	1 cut(s)	3483
AspLEI	GCGC	6 cut(s)	16, 1989, 2050, 2096, 2961, 3627
AsuC2I	CCSGG	1 cut(s)	4020
AsuHPI	GGTGA	8 cut(s)	1082, 1673, 3002, 3697, 3815, 3971, 4019, 4202
AvaI	CYCGRG	3 cut(s)	158, 4974, 5194
AvaII	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3124, 4165, 4558
AxyI	CCTNAGG	1 cut(s)	3672
BaeGI	GKGCMC	4 cut(s)	664, 1129, 2791, 4827
BaeI	ACNNNNGTAYC	2 cut(s)	4404, 4437
BalI	TGGCCA	1 cut(s)	2820
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	4 cut(s)	175, 1735, 3924, 4120
BauI	CACGAG	2 cut(s)	135, 3033
BbsI	GAAGAC	2 cut(s)	3498, 5179
Bbv12I	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2950, 3924, 4827
BceAI	ACGGC	6 cut(s)	324, 816, 1096, 3014, 3612, 5060
BciT130I	CCWGG	6 cut(s)	323, 444, 567, 696, 2438, 3405
BciVI	GTATCC	5 cut(s)	402, 2434, 2443, 3728, 4423
BclI	TGATCA	5 cut(s)	354, 504, 1273, 1813, 5187
BcnI	CCSGG	1 cut(s)	4020
BcoDI	GTCTC	8 cut(s)	615, 1253, 1305, 1467, 1691, 2807, 4357, 5086
BfaI	CTAG	8 cut(s)	525, 1920, 3083, 3362, 3987, 4476, 4776, 4820
BfmI	CTRYAG	2 cut(s)	3981, 5042
BfoI	RGCGCY	1 cut(s)	3628
BfuAI	ACCTGC	4 cut(s)	31, 1786, 4176, 4625
BfuI	GTATCC	5 cut(s)	402, 2434, 2443, 3728, 4423
BglII	AGATCT	2 cut(s)	195, 5017
BlpI	GCTNAGC	1 cut(s)	2634
Bme1390I	CCNGG	7 cut(s)	323, 444, 567, 696, 2438, 3405, 4020
Bme18I	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3124, 4165, 4558
BmeT110I	CYCGRG	3 cut(s)	158, 4974, 5194
BmiI	GGNNCC	7 cut(s)	45, 156, 2719, 3125, 3286, 3402, 3601
BmrFI	CCNGG	7 cut(s)	323, 444, 567, 696, 2438, 3405, 4020
BmrI	ACTGGG	1 cut(s)	2159
BmsI	GCATC	9 cut(s)	1053, 1539, 1619, 1684, 2655, 4136, 4747, 4838, 4928
BmuI	ACTGGG	1 cut(s)	2159
BoxI	GACNNNNGTC	1 cut(s)	4398
BpiI	GAAGAC	2 cut(s)	3498, 5179
BplI	GAGNNNNNCTC	6 cut(s)	1582, 1614, 2354, 2386, 3684, 3716
BpmI	CTGGAG	6 cut(s)	657, 2292, 2757, 3426, 3711, 4944
Bpu10I	CCTNAGC	3 cut(s)	3887, 3972, 4799
Bpu1102I	GCTNAGC	1 cut(s)	2634
BpuEI	CTTGAG	2 cut(s)	2675, 4475
BpuMI	CCSGG	1 cut(s)	4020
BsaBI	GATNNNNATC	3 cut(s)	987, 1047, 4716
BsaHI	GRCGYC	1 cut(s)	1765
BsaI	GGTCTC	1 cut(s)	2807
BsaJI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2436, 3299, 4029, 4894
BsaWI	WCCGGW	1 cut(s)	3829
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 1186, 1216, 1233, 1263, 4917, 4947
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	8 cut(s)	517, 786, 976, 2165, 2309, 3694, 4019, 4424
Bse21I	CCTNAGG	1 cut(s)	3672
Bse3DI	GCAATG	5 cut(s)	2859, 2871, 3888, 4743, 5230
Bse8I	GATNNNNATC	3 cut(s)	987, 1047, 4716
BseAI	TCCGGA	1 cut(s)	3829
BseBI	CCWGG	6 cut(s)	323, 444, 567, 696, 2438, 3405
BseDI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2436, 3299, 4029, 4894
BseGI	GGATG	7 cut(s)	1675, 1933, 3826, 4069, 4705, 4735, 4739
BseJI	GATNNNNATC	3 cut(s)	987, 1047, 4716
BseMI	GCAATG	5 cut(s)	2859, 2871, 3888, 4743, 5230
BseNI	ACTGG	8 cut(s)	517, 786, 976, 2165, 2309, 3694, 4019, 4424
BseRI	GAGGAG	6 cut(s)	290, 357, 1621, 2585, 5050, 5138
BseSI	GKGCMC	4 cut(s)	664, 1129, 2791, 4827
BseYI	CCCAGC	3 cut(s)	228, 1000, 1428
BsgI	GTGCAG	3 cut(s)	1499, 2231, 4830
Bsh1236I	CGCG	1 cut(s)	4157
BshFI	GGCC	7 cut(s)	130, 1057, 2820, 3180, 3287, 3670, 4018
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2950, 3924, 4827
BsiHKCI	CYCGRG	3 cut(s)	158, 4974, 5194
BsiSI	CCGG	4 cut(s)	879, 1130, 3830, 4020
BslFI	GGGAC	5 cut(s)	39, 1627, 3073, 4896, 5147
BsmAI	GTCTC	8 cut(s)	615, 1253, 1305, 1467, 1691, 2807, 4357, 5086
BsmFI	GGGAC	5 cut(s)	39, 1627, 3073, 4896, 5147
BsmI	GAATGC	2 cut(s)	10, 4812
BsnI	GGCC	7 cut(s)	130, 1057, 2820, 3180, 3287, 3670, 4018
Bso31I	GGTCTC	1 cut(s)	2807
BsoBI	CYCGRG	3 cut(s)	158, 4974, 5194
Bsp1286I	GDGCHC	9 cut(s)	175, 664, 1129, 1735, 2791, 2950, 3924, 4120, 4827
Bsp13I	TCCGGA	1 cut(s)	3829
Bsp1407I	TGTACA	2 cut(s)	2933, 4792
Bsp1720I	GCTNAGC	1 cut(s)	2634
Bsp19I	CCATGG	2 cut(s)	489, 4894
BspACI	CCGC	9 cut(s)	126, 217, 794, 1054, 2894, 2921, 3266, 3469, 3683
BspANI	GGCC	7 cut(s)	130, 1057, 2820, 3180, 3287, 3670, 4018
BspEI	TCCGGA	1 cut(s)	3829
BspFNI	CGCG	1 cut(s)	4157
BspLI	GGNNCC	7 cut(s)	45, 156, 2719, 3125, 3286, 3402, 3601
BspMAI	CTGCAG	2 cut(s)	3985, 5046
BspMI	ACCTGC	4 cut(s)	31, 1786, 4176, 4625
BspPI	GGATC	6 cut(s)	1037, 1956, 2257, 2663, 4041, 4096
BspQI	GCTCTTC	2 cut(s)	2322, 5062
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	2807
BsrDI	GCAATG	5 cut(s)	2859, 2871, 3888, 4743, 5230
BsrFI	RCCGGY	1 cut(s)	1129
BsrGI	TGTACA	2 cut(s)	2933, 4792
BsrI	ACTGG	8 cut(s)	517, 786, 976, 2165, 2309, 3694, 4019, 4424
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2436, 3299, 4029, 4894
BssNI	GRCGYC	1 cut(s)	1765
BssSI	CACGAG	2 cut(s)	135, 3033
BssT1I	CCWWGG	4 cut(s)	489, 847, 856, 4894
Bst2BI	CACGAG	2 cut(s)	135, 3033
Bst2UI	CCWGG	6 cut(s)	323, 444, 567, 696, 2438, 3405
Bst6I	CTCTTC	4 cut(s)	1639, 2322, 5062, 5212
BstACI	GRCGYC	1 cut(s)	1765
BstAPI	GCANNNNNTGC	2 cut(s)	2411, 4299
BstAUI	TGTACA	2 cut(s)	2933, 4792
BstDSI	CCRYGG	2 cut(s)	489, 4894
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	7 cut(s)	1675, 1933, 3826, 4069, 4705, 4735, 4739
BstFNI	CGCG	1 cut(s)	4157
BstH2I	RGCGCY	1 cut(s)	3628
BstHHI	GCGC	6 cut(s)	16, 1989, 2050, 2096, 2961, 3627
BstMAI	GTCTC	8 cut(s)	615, 1253, 1305, 1467, 1691, 2807, 4357, 5086
BstNI	CCWGG	6 cut(s)	323, 444, 567, 696, 2438, 3405
BstPAI	GACNNNNGTC	1 cut(s)	4398
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	7 cut(s)	321, 442, 565, 694, 2436, 3403, 4018
BstSFI	CTRYAG	2 cut(s)	3981, 5042
BstSLI	GKGCMC	4 cut(s)	664, 1129, 2791, 4827
BstUI	CGCG	1 cut(s)	4157
BstV2I	GAAGAC	2 cut(s)	3498, 5179
BstX2I	RGATCY	4 cut(s)	195, 2249, 4033, 5017
BstYI	RGATCY	4 cut(s)	195, 2249, 4033, 5017
Bsu36I	CCTNAGG	1 cut(s)	3672
BsuI	GTATCC	5 cut(s)	402, 2434, 2443, 3728, 4423
BsuRI	GGCC	7 cut(s)	130, 1057, 2820, 3180, 3287, 3670, 4018
BtgI	CCRYGG	2 cut(s)	489, 4894
BtsCI	GGATG	7 cut(s)	1675, 1933, 3826, 4069, 4705, 4735, 4739
BtsI	GCAGTG	2 cut(s)	3978, 4252
BveI	ACCTGC	4 cut(s)	31, 1786, 4176, 4625
CaiI	CAGNNNCTG	3 cut(s)	2315, 2411, 4589
CfoI	GCGC	6 cut(s)	16, 1989, 2050, 2096, 2961, 3627
Cfr10I	RCCGGY	1 cut(s)	1129
CseI	GACGC	4 cut(s)	503, 1754, 4040, 4146
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
DraIII	CACNNNGTG	3 cut(s)	137, 458, 2942
DrdI	GACNNNNNNGTC	1 cut(s)	5159
DseDI	GACNNNNNNGTC	1 cut(s)	5159
EaeI	YGGCCR	2 cut(s)	2818, 3178
Eam1104I	CTCTTC	4 cut(s)	1639, 2322, 5062, 5212
EarI	CTCTTC	4 cut(s)	1639, 2322, 5062, 5212
Ecl136II	GAGCTC	3 cut(s)	173, 1733, 3922
Eco130I	CCWWGG	4 cut(s)	489, 847, 856, 4894
Eco147I	AGGCCT	1 cut(s)	3670
Eco24I	GRGCYC	4 cut(s)	175, 1735, 3924, 4120
Eco31I	GGTCTC	1 cut(s)	2807
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3124, 4165, 4558
Eco53kI	GAGCTC	3 cut(s)	173, 1733, 3922
Eco57I	CTGAAG	5 cut(s)	1599, 1736, 1869, 2034, 2346
Eco81I	CCTNAGG	1 cut(s)	3672
Eco88I	CYCGRG	3 cut(s)	158, 4974, 5194
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	3 cut(s)	173, 1733, 3922
EcoO109I	RGGNCCY	2 cut(s)	1892, 4165
EcoO65I	GGTNACC	1 cut(s)	713
EcoRI	GAATTC	2 cut(s)	1165, 4463
EcoRII	CCWGG	6 cut(s)	321, 442, 565, 694, 2436, 3403
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	4 cut(s)	489, 847, 856, 4894
EcoT22I	ATGCAT	3 cut(s)	1233, 1554, 2081
EcoT38I	GRGCYC	4 cut(s)	175, 1735, 3924, 4120
ErhI	CCWWGG	4 cut(s)	489, 847, 856, 4894
FaqI	GGGAC	5 cut(s)	39, 1627, 3073, 4896, 5147
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	18, 3709
FbaI	TGATCA	5 cut(s)	354, 504, 1273, 1813, 5187
FblI	GTMKAC	1 cut(s)	3444
FokI	GGATG	7 cut(s)	1662, 1920, 3813, 4076, 4712, 4722, 4726
FriOI	GRGCYC	4 cut(s)	175, 1735, 3924, 4120
FspAI	RTGCGCAY	1 cut(s)	2095
FspBI	CTAG	8 cut(s)	525, 1920, 3083, 3362, 3987, 4476, 4776, 4820
FspI	TGCGCA	1 cut(s)	2095
GlaI	GCGC	6 cut(s)	15, 1988, 2049, 2095, 2960, 3626
GsaI	CCCAGC	3 cut(s)	232, 1004, 1432
GsuI	CTGGAG	6 cut(s)	657, 2292, 2757, 3426, 3711, 4944
HaeII	RGCGCY	1 cut(s)	3628
HaeIII	GGCC	7 cut(s)	130, 1057, 2820, 3180, 3287, 3670, 4018
HapII	CCGG	4 cut(s)	879, 1130, 3830, 4020
HgaI	GACGC	4 cut(s)	503, 1754, 4040, 4146
HhaI	GCGC	6 cut(s)	16, 1989, 2050, 2096, 2961, 3627
Hin1I	GRCGYC	1 cut(s)	1765
Hin6I	GCGC	6 cut(s)	14, 1987, 2048, 2094, 2959, 3625
HinP1I	GCGC	6 cut(s)	14, 1987, 2048, 2094, 2959, 3625
HincII	GTYRAC	4 cut(s)	301, 2275, 2757, 3445
HindII	GTYRAC	4 cut(s)	301, 2275, 2757, 3445
HindIII	AAGCTT	4 cut(s)	2517, 2903, 3144, 3860
HpaII	CCGG	4 cut(s)	879, 1130, 3830, 4020
HphI	GGTGA	8 cut(s)	1082, 1673, 3002, 3697, 3815, 3971, 4019, 4202
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	9 cut(s)	1883, 2009, 2551, 3548, 3793, 3956, 4204, 4429, 4690
HpyCH4IV	ACGT	3 cut(s)	147, 2909, 4282
HpySE526I	ACGT	3 cut(s)	147, 2909, 4282
Hsp92I	GRCGYC	1 cut(s)	1765
HspAI	GCGC	6 cut(s)	14, 1987, 2048, 2094, 2959, 3625
Kpn2I	TCCGGA	1 cut(s)	3829
Ksp22I	TGATCA	5 cut(s)	354, 504, 1273, 1813, 5187
LguI	GCTCTTC	2 cut(s)	2322, 5062
LmnI	GCTCC	6 cut(s)	1326, 1730, 3407, 3599, 4176, 4591
LweI	GCATC	9 cut(s)	1053, 1539, 1619, 1684, 2655, 4136, 4747, 4838, 4928
MaeI	CTAG	8 cut(s)	525, 1920, 3083, 3362, 3987, 4476, 4776, 4820
MaeII	ACGT	3 cut(s)	147, 2909, 4282
MfeI	CAATTG	5 cut(s)	957, 1277, 1685, 1772, 4864
MflI	RGATCY	4 cut(s)	195, 2249, 4033, 5017
MhlI	GDGCHC	9 cut(s)	175, 664, 1129, 1735, 2791, 2950, 3924, 4120, 4827
MlsI	TGGCCA	1 cut(s)	2820
MluI	ACGCGT	1 cut(s)	4155
MluNI	TGGCCA	1 cut(s)	2820
MlyI	GAGTC	4 cut(s)	1693, 1795, 4501, 5147
MmeI	TCCRAC	3 cut(s)	1524, 1708, 4604
Mox20I	TGGCCA	1 cut(s)	2820
Mph1103I	ATGCAT	3 cut(s)	1233, 1554, 2081
MroI	TCCGGA	1 cut(s)	3829
MroXI	GAANNNNTTC	1 cut(s)	3483
MscI	TGGCCA	1 cut(s)	2820
MslI	CAYNNNNRTG	3 cut(s)	2089, 4257, 4834
Msp20I	TGGCCA	1 cut(s)	2820
MspA1I	CMGCKG	6 cut(s)	217, 296, 1054, 2714, 3469, 5216
MspI	CCGG	4 cut(s)	879, 1130, 3830, 4020
MspR9I	CCNGG	7 cut(s)	323, 444, 567, 696, 2438, 3405, 4020
MunI	CAATTG	5 cut(s)	957, 1277, 1685, 1772, 4864
Mva1269I	GAATGC	2 cut(s)	10, 4812
MvaI	CCWGG	6 cut(s)	323, 444, 567, 696, 2438, 3405
MvnI	CGCG	1 cut(s)	4157
NciI	CCSGG	1 cut(s)	4020
NcoI	CCATGG	2 cut(s)	489, 4894
NdeI	CATATG	2 cut(s)	18, 3709
NlaIV	GGNNCC	7 cut(s)	45, 156, 2719, 3125, 3286, 3402, 3601
NmeAIII	GCCGAG	3 cut(s)	3324, 4054, 5131
NmuCI	GTSAC	9 cut(s)	450, 1787, 1806, 2990, 3131, 3685, 3976, 4007, 4597
NsbI	TGCGCA	1 cut(s)	2095
NsiI	ATGCAT	3 cut(s)	1233, 1554, 2081
OliI	CACNNNNGTG	1 cut(s)	4257
PaeI	GCATGC	2 cut(s)	4248, 5203
PaeR7I	CTCGAG	2 cut(s)	4974, 5194
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	3670
PciI	ACATGT	3 cut(s)	558, 645, 1803
PciSI	GCTCTTC	2 cut(s)	2322, 5062
PcsI	WCGNNNNNNNCGW	2 cut(s)	434, 5157
PctI	GAATGC	2 cut(s)	10, 4812
PdmI	GAANNNNTTC	1 cut(s)	3483
PflMI	CCANNNNNTGG	2 cut(s)	572, 2854
PfoI	TCCNGGA	1 cut(s)	3403
PleI	GAGTC	4 cut(s)	1693, 1794, 4500, 5147
PpsI	GAGTC	4 cut(s)	1693, 1794, 4500, 5147
PpuMI	RGGWCCY	2 cut(s)	1892, 4165
PscI	ACATGT	3 cut(s)	558, 645, 1803
PshAI	GACNNNNGTC	1 cut(s)	4398
PsiI	TTATAA	2 cut(s)	1211, 2613
Psp124BI	GAGCTC	3 cut(s)	175, 1735, 3924
Psp1406I	AACGTT	2 cut(s)	147, 4282
Psp5II	RGGWCCY	2 cut(s)	1892, 4165
Psp6I	CCWGG	6 cut(s)	321, 442, 565, 694, 2436, 3403
PspEI	GGTNACC	1 cut(s)	713
PspFI	CCCAGC	3 cut(s)	228, 1000, 1428
PspGI	CCWGG	6 cut(s)	321, 442, 565, 694, 2436, 3403
PspN4I	GGNNCC	7 cut(s)	45, 156, 2719, 3125, 3286, 3402, 3601
PspPPI	RGGWCCY	2 cut(s)	1892, 4165
PspXI	VCTCGAGB	2 cut(s)	4974, 5194
PstI	CTGCAG	2 cut(s)	3985, 5046
PstNI	CAGNNNCTG	3 cut(s)	2315, 2411, 4589
PsuI	RGATCY	4 cut(s)	195, 2249, 4033, 5017
PvuII	CAGCTG	3 cut(s)	296, 2714, 5216
RseI	CAYNNNNRTG	3 cut(s)	2089, 4257, 4834
SacI	GAGCTC	3 cut(s)	175, 1735, 3924
SalI	GTCGAC	1 cut(s)	3443
SapI	GCTCTTC	2 cut(s)	2322, 5062
SchI	GAGTC	4 cut(s)	1693, 1795, 4501, 5147
ScrFI	CCNGG	7 cut(s)	323, 444, 567, 696, 2438, 3405, 4020
SduI	GDGCHC	9 cut(s)	175, 664, 1129, 1735, 2791, 2950, 3924, 4120, 4827
SfaNI	GCATC	9 cut(s)	1053, 1539, 1619, 1684, 2655, 4136, 4747, 4838, 4928
SfcI	CTRYAG	2 cut(s)	3981, 5042
Sfr274I	CTCGAG	2 cut(s)	4974, 5194
SinI	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3124, 4165, 4558
SlaI	CTCGAG	2 cut(s)	4974, 5194
SmiMI	CAYNNNNRTG	3 cut(s)	2089, 4257, 4834
SmlI	CTYRAG	4 cut(s)	2654, 4454, 4974, 5194
SmoI	CTYRAG	4 cut(s)	2654, 4454, 4974, 5194
SphI	GCATGC	2 cut(s)	4248, 5203
SseBI	AGGCCT	1 cut(s)	3670
SsiI	CCGC	9 cut(s)	126, 217, 794, 1054, 2894, 2921, 3266, 3469, 3683
SspI	AATATT	2 cut(s)	3483, 3746
SspMI	CTAG	8 cut(s)	525, 1920, 3083, 3362, 3987, 4476, 4776, 4820
SstI	GAGCTC	3 cut(s)	175, 1735, 3924
StuI	AGGCCT	1 cut(s)	3670
StyD4I	CCNGG	7 cut(s)	321, 442, 565, 694, 2436, 3403, 4018
StyI	CCWWGG	4 cut(s)	489, 847, 856, 4894
TaiI	ACGT	3 cut(s)	150, 2912, 4285
TatI	WGTACW	5 cut(s)	73, 2933, 3207, 4261, 4792
TauI	GCSGC	2 cut(s)	220, 1057
TseFI	GTSAC	9 cut(s)	450, 1787, 1806, 2990, 3131, 3685, 3976, 4007, 4597
Tsp45I	GTSAC	9 cut(s)	450, 1787, 1806, 2990, 3131, 3685, 3976, 4007, 4597
TspGWI	ACGGA	6 cut(s)	105, 1826, 3521, 3692, 4388, 4546
Van91I	CCANNNNNTGG	2 cut(s)	572, 2854
VneI	GTGCAC	3 cut(s)	660, 1125, 4823
VpaK11BI	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3124, 4165, 4558
XapI	RAATTY	9 cut(s)	730, 1159, 1165, 1300, 2472, 3593, 3723, 3834, 4463
XbaI	TCTAGA	1 cut(s)	1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XhoI	CTCGAG	2 cut(s)	4974, 5194
XmiI	GTMKAC	1 cut(s)	3444
XmnI	GAANNNNTTC	1 cut(s)	3483
XspI	CTAG	8 cut(s)	525, 1920, 3083, 3362, 3987, 4476, 4776, 4820
Zsp2I	ATGCAT	3 cut(s)	1233, 1554, 2081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.