Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003246

Physical Location & Seq

Genomic Coordinates Forward (+)

70230662 .. 70239511

Gene Structure 8850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG486400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5133 bp

ATGAATGCACAGGCGCATATGTCTGGACAAATCTCTGGGCAGGTGCCCAATCAGACAGGTTCTCAGTTGCCTGTACTGCCCCAACATAACGGAAATGCCATTCCTCCCCAAATGCAAAATGTAGGCGGGCCACCTCGTGTGATCAACACTTTGGACCCCGAGCTTGTTAGAGCTCGTCACTTTATGCAGGAGAAGATCTGTCGTGTTATACAGCAGCGGCAACTTCCCCAGCCAATGAATGAAAGGAAGTTTAGGGATATTGTTAAACGCTTGGAGGAGGGTTTGTTGAGATCAGCTGTCAACAAGGAGGACTATATGAACCTGGACACATTAGAGAGCCGTTTGCATAATCTGATCAAGCGTTCTCCTCAGACCAACCAGAGCCAACAGTATCCACAGCTTGTTAATTCTTCCTCTCCTGTTGGTACGATGATACCGACCCCTGGCATGTCACACAGTGGGAACTCAAATATGATGGTTACTTCTTCCATGGACGCTTCTATGATCAATACTGGTGGAACTACTAGCATACCACCCACAACGGTCAGCACAGGAAACATGTTGCCAGGTGGTGGCTTACATGGTTCTATGTCTAATGGATATCAGCAGTCTCCTGCCAATTTCTCCATTGGTTCTGGAGGAAACATGTCGTCGATGGGTGCACAAAGAATTGCAAGCCAAATGATTCCCACTCCTGGGTTTAATAACAGTGGTAACCAATCTTACATGAATTTGGAATCCTCTAATAACAGTGCTGGGTTCTCTACTGTTGATTCTTCAATGGTAACGCAACCGCAACAGCAAAAGCAGCATATTGGTAGTCAAAACAGCCGTATGCTTCATAACCTTGGCAGCCAAGGGAGTAGTGGAATGAGGTCCGGCTTGCAGCAGAAATCGTATGGGATGTCAAATGGGTCTATAAATGGTGGAATGGGAATGATTGCAAACAATTTACCAATTGTTAATGAAACTGGCATTTCGGATAGCTATGTGACCCCCACAACTTATGCCAATTCTTCCAAACCCTTACAGCAACACTTTGATCCACATCAGCGGCCTGTAATGCAAGGTGATGGCTACGGCATAAACAATGCTGATTCTTTTGGGTCTGGAAATTACTATGGTGCACCGGCTTCTGGGTCAATGATGAATCCTCAAAATTTGAATTCAGTCAGCATGACACCTATATCCAAGACCAGCTCTCCCCTTATAAGTAATCAGTCCAATATGCATACTCAACAACAAAGTCTCCATGTGAAGCCTCAACAATTTGATCAATTGGAAAAGATGAGTTTCCAAAATTCTTCAAGAGACAATATGCTCCAATCTCATCAGCACCAGCAATTTCAGCAGCAACCCAATCAATTTCAACAGCAGCAGCAATTAGTTCACAACCAACGCCAACAGAAGCAGCAAAATCAGCAAGCCCAGCATTTGTCAACTAATGATGTTTTTGTTCAGTCTCCGATGACATCTGATTTAAGCAGTCAAGCAAAGCGTGATAATGAAGTTATGCACTCACAAACAGAACAGTTCCAAATGTCGGAGATGCATAATCAATACCATCAGCACTCTGCTGAAGATCGTTTGAGGAATACTCAGCATAACGCATCTGGTCAGCATGATCTCTCCTCTTCATCGTCCCAAACTTCTCAGCAAATGCAACAAATGTTGCATCCTCACCAATTGATTGCAGAGACTCGAAATGATTTCAGTTCTCTTTCTGTTGGAGCTCAATCAGAATCAGCACTTCAGGGTCAATGGCGTCCTCAATTGCAAGATGGGAGTAACAGGCAGGTCCACATGTCACATGATCAGCATGTCCAAGAAGATTTCCGTCAGAGAATATCTGGGCAAGATGAAGCTCAGTGTAATAATCTTTCGTCAGAAGGACCTAATGTTAGTCAAACTGTTGCCTCTAGAAGCACATCTCATCCCCAGAATCAGGATCGGTTCAGAAATCAACAGAGATGGCTTTTGTTCTTGCGCCATGCTCGTAAATGTCCATCTTCTGAAGGGAAATGTAAAGAATCTCATTGTTTAACAGCGCAAAAGTTGTTGAAACATATTGAAATATGCATGTCATTCCAATGCACATATCCTTACTGTCCTCGTACCAAGAAGTTGCTTCATCATCACAAGAGTTGCTCGGATTCAGCTTGCCCAGTTTGTGTTCCTGTCAAGAATTATATTCAGACACATAATAAGGTGCAGACCCGTCTTGTTCCTGAATCTGGTGTTCAGAATGGATCTTGTAAAGCCTATGATAGTGTTGACACTTCTGCTACATTGATTTCTAAGATTCCTCCAGTTGCTGAAACTTCTGAAGAGCCGCAACCATCTATGAAACGCTTGAAGATAGAGCAGTCCTCTCAATCAATTATTCCTGATTCTGTAAGTAATGCAGTAACGGCTTCTGCAATTAAGGAACCCCATGTATCCCAGGATACACAGATTCAGGATTACCAACAGAGTGAAATTTCTATGCCAATTAAATCTGAGTTTAAGGAAGTGAAAATAGAAGCTTCTTTAAGTTCTGGACATGGGAATCTTGATGAGATGAAGGATAGTTTTGAGGAGAACTGCAATCAAAGGCAGGATAGTGTGCCTGCCCCTTATAATGAGCCTGCTGGTTTAGCTAAGCAAGAAAGCATCAAACTTGAGAAAGAAATTGATCCAGCTAAACAAGAAAATGCTATGCAGACTGTGGAAAATCCAGCTGGAACCAAGTCTGGGAAGCCTAAAATAAAGGGCGTGTCGTTGACTGAATTGTTCACTCCAGAGCAAGTTAGGGCACACATTACAGGTCTCAGACAGTGGGTTGGCCAGAGCAAAGCAAAGGCAGAGAAGAACCAAGCAATGGAACATGCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAGCTTACGTTTGAACCACCGCCTATGTATTGTACACCTTGTGGTGCTCGTATAAAGCGCAATTCTATGTATTATACAATGGGGGCTGGTGACACACGGCATTATTTTTGTATTCCATGCTATAATGAGGCTCGTGGAGATACAATAATTGTTGATGGGACAGCTATTCCAAAGGCAAGGCTAGAGAAGAAGAAAAATGATGAGGAAACAGAAGAATGGTGGGTCCAATGTGACAAGTGTGAAGCTTGGCAACATCAAATCTGTGCTTTGTTCAATGGCCGAAGAAATGATGGTGGACAAGCTGAGTACACTTGCCCTAATTGCTATATACATGAGGTTGAAAGGGGAGAGCGTAAGCCATTACCGCAGAGTGCTGTTTTGGGGGCCAAAGATTTGCCAAGGACAATACTCAGCGACCACATAGAGCAACGGTTATTTAAGAAACTAAAGGTGGAAAGACTAGAGAGGGCGAGACAGCAGGGAAAAAGTTATGATGAGGTTCCTGGAGCAGAATCACTTGTAATTAGAGTTGTGTCATCTGTCGACAAAAAATTGGAAGTAAAGCAGCGGTTTTTAGAAATATTTCAGGAAGACAATTATCCCACGGAGTTCCCATATAAATCTAAGGTTGTATTGCTGTTCCAGAAAATTGAAGGTGTAGAAGTATGCTTATTCGGCATGTATGTTCAAGAATTTGGAGCCGAATGTCAATTTCCAAATCAGCGCCGTGTTTATCTATCGTATTTGGATTCTGTTAAGTATTTTAGGCCTGAGGTTAAGGCGGTGACTGGAGAAGCTCTCCGCACATATGTTTACCATGAAATTCTAATTGGATACCTCGAATATTGCAAGCTACGAGGGTTTACAAGCTGCTATATTTGGGCATGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACACCGAAATCTGATAAGCTTCGTGAATGGTATTTGGCAATGCTTAGGAAAGCCTCTAAGGAAAACATCGTAGTCGAGCTCACTAATTTATACGATCATTTCTTTGTAACTAATGGTGAAGGCAAGGCTAAGGTCACTGCAGCTAGGCTGCCCTACTTTGATGGTGACTACTGGCCCGGTGCTGCTGAGGATCTCATTTATCAAATGCGTCAAGATGAGGATGGGAGAAAACAGAATAAGAAAGGATCAACCAAAAAGACAATAACAAAAAGGGCTCTAAAAGCATCTGGGCAGACTGATCTCTCTGGTAACGCGTCAAAGGACCTGCTCCTAATGCACAAACTTGGTGAAACTATTAGCCCGATGAAGGAAGATTTCATCATGGTTCATTTGCAGCACGCATGCTCTCACTGCTGTGTACTAATGGTATCTGGAAAACGTTGGGCTTGCAATCAATGCAGATATTTTCAGCTATGTGATAAGTGTTATGAAGCAGAGCAGAAACGGGAAGAAAGGGAGAGACACCCTATCAATATGAGGGATAAACATGACTTCCGTCCTTTTGACATCACTGATGTACCAGTGGATACGAAGGACAGAGATGAGATTCTTGAGAGCGAATTCTTTGACACTAGACAGGCGTTTCTGAGTCTTTGTCAAGGGAATCATTATCAGTATGATACTTTACGGAGGGCTAAACATTCCTCTATGATGGTCCTTTACCATCTTCATAATCCAACGGCTCCTGCATTTGTGACAACATGCAATATATGTCATCTCGACATTGAAGCAGGTCAAGGTTGGCGTTGTGAAGTTTGCCCTGAATATGATGTGTGCAATAGTTGTTATCAGAAGGATGGTGGTGTCGATCATCATCATAAATTGACAAATCATCCATCCATTGCTGACCGTGATGCACAAAACAAGGAAGCTAGGCAAATGCGAGTTGTACAGCTTAGGAGAATGCTTGATCTTCTAGTGCACGCATCACAATGTCGTTCTGCACAATGTATGTACCCCAATTGTCGCAAGGTCAAGGGACTTTTTCGCCATGGAATTCAATGTAAAGTTCGTGCATCTGGAGGTTGTGTTCTTTGTAAGAAAATGTGGTATCTCCTGCAACTTCATGCTCGAGCTTGCAAAGTATCTGAGTGCCATGTACCTCGTTGCAGAGATCTAAAAGAACATTTGAGGAGGCTGCAGCAACAGTCTGATTCAAGGCGAAGAGCTGCCGTGATGGAGATGATGAGACAGAGAGCTGCCGAGATAAACAATTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1710

Amino Acids

193.39

Weight (kDa)

8.46

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	655 - 724	1e-15	TAZ zinc finger
PHD	PF00628	1037 - 1077	8.8e-06	PHD-finger
HAT_KAT11	PF08214	1135 - 1351	2.5e-38	Histone acetylation protein
ZZ	PF00569	1535 - 1575	7.9e-07	Zinc finger, ZZ type
zf-TAZ	PF02135	1603 - 1673	1.8e-13	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G16710 AT1G79000 AT1G79000 AT1G79000
fragaria_vesca	FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320 FvH4_6g36320
malus_domestica	MD09G1170000.v1.1 MD17G1157200.v1.1 MD17G1157500.v1.1
prunus_persica	Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1 Prupe.3G028200_v2.0.a1
pyrus_communis	pycom09g08750 pycom17g15040
rosa_chinensis	RchiOBHm_Chr2g0148331
rosa_laevigata	RLG00000020340
rosa_roxburghii	Rroxscaffold_2G00098860
rosa_rugosa	Rorug02G0405800
rosa_samantha	Rh2AG464900 Rh2BG477500 Rh2CG451300 Rh2DG486400
rosa_wichuraiana	Rw2G037880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1211, 2619
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	4 cut(s)	31, 1786, 4182, 4631
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	2 cut(s)	572, 2860
AccI	GTMKAC	1 cut(s)	3450
AccII	CGCG	1 cut(s)	4163
AccIII	TCCGGA	1 cut(s)	3835
AclI	AACGTT	1 cut(s)	4288
AclWI	GGATC	6 cut(s)	1037, 1956, 2257, 2669, 4047, 4102
AcoI	YGGCCR	2 cut(s)	2824, 3184
AcuI	CTGAAG	4 cut(s)	1599, 1736, 2034, 2346
AcyI	GRCGYC	1 cut(s)	1765
AdeI	CACNNNGTG	3 cut(s)	137, 458, 2948
AflIII	ACRYGT	4 cut(s)	558, 645, 1803, 4161
AjnI	CCWGG	6 cut(s)	321, 442, 565, 694, 2442, 3409
AjuI	GAANNNNNNNTTGG	2 cut(s)	3720, 3752
AleI	CACNNNNGTG	1 cut(s)	4263
AloI	GAACNNNNNNTCC	2 cut(s)	4923, 4955
Alw21I	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2956, 3930, 4833
Alw26I	GTCTC	9 cut(s)	615, 1253, 1305, 1467, 1691, 2813, 3373, 4363, 5092
Alw44I	GTGCAC	3 cut(s)	660, 1125, 4829
AlwI	GGATC	6 cut(s)	1037, 1956, 2257, 2669, 4047, 4102
AlwNI	CAGNNNCTG	1 cut(s)	2315
Ama87I	CYCGRG	2 cut(s)	158, 4980
Aor13HI	TCCGGA	1 cut(s)	3835
AoxI	GGCC	7 cut(s)	128, 1055, 2824, 3184, 3291, 3674, 4022
ApaLI	GTGCAC	3 cut(s)	660, 1125, 4829
Asp700I	GAANNNNTTC	1 cut(s)	3489
AspLEI	GCGC	5 cut(s)	16, 1989, 2050, 2967, 3633
AsuC2I	CCSGG	1 cut(s)	4026
AsuHPI	GGTGA	8 cut(s)	1082, 1673, 3008, 3703, 3821, 3977, 4025, 4208
AvaI	CYCGRG	2 cut(s)	158, 4980
AvaII	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3130, 4171, 4564
AxyI	CCTNAGG	1 cut(s)	3678
BaeGI	GKGCMC	5 cut(s)	48, 664, 1129, 2797, 4833
BaeI	ACNNNNGTAYC	2 cut(s)	4410, 4443
BalI	TGGCCA	1 cut(s)	2826
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	4 cut(s)	175, 1735, 3930, 4126
BauI	CACGAG	2 cut(s)	135, 3039
BbsI	GAAGAC	1 cut(s)	3504
Bbv12I	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2956, 3930, 4833
BbvCI	CCTCAGC	1 cut(s)	4035
BceAI	ACGGC	8 cut(s)	324, 816, 1096, 2427, 3020, 3618, 4605, 5066
BciT130I	CCWGG	6 cut(s)	323, 444, 567, 696, 2444, 3411
BciVI	GTATCC	5 cut(s)	402, 2440, 2449, 3734, 4429
BclI	TGATCA	5 cut(s)	141, 354, 504, 1273, 1813
BcnI	CCSGG	1 cut(s)	4026
BcoDI	GTCTC	9 cut(s)	615, 1253, 1305, 1467, 1691, 2813, 3373, 4363, 5092
BfaI	CTAG	8 cut(s)	525, 1920, 3089, 3368, 3993, 4482, 4782, 4826
BfmI	CTRYAG	2 cut(s)	3987, 5048
BfoI	RGCGCY	1 cut(s)	3634
BfuAI	ACCTGC	4 cut(s)	31, 1786, 4182, 4631
BfuI	GTATCC	5 cut(s)	402, 2440, 2449, 3734, 4429
BglII	AGATCT	2 cut(s)	195, 5023
BlpI	GCTNAGC	1 cut(s)	2640
Bme1390I	CCNGG	7 cut(s)	323, 444, 567, 696, 2444, 3411, 4026
Bme18I	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3130, 4171, 4564
BmeT110I	CYCGRG	2 cut(s)	158, 4980
BmiI	GGNNCC	9 cut(s)	45, 156, 2430, 2725, 3131, 3292, 3408, 3607, 4593
BmrFI	CCNGG	7 cut(s)	323, 444, 567, 696, 2444, 3411, 4026
BmrI	ACTGGG	1 cut(s)	2159
BmsI	GCATC	8 cut(s)	1539, 1619, 1684, 2661, 4142, 4753, 4844, 4934
BmuI	ACTGGG	1 cut(s)	2159
BoxI	GACNNNNGTC	1 cut(s)	4404
BpiI	GAAGAC	1 cut(s)	3504
BplI	GAGNNNNNCTC	6 cut(s)	1582, 1614, 2354, 2386, 3690, 3722
BpmI	CTGGAG	6 cut(s)	657, 2292, 2763, 3432, 3717, 4950
Bpu10I	CCTNAGC	4 cut(s)	3893, 3978, 4035, 4805
Bpu1102I	GCTNAGC	1 cut(s)	2640
BpuEI	CTTGAG	2 cut(s)	2681, 4481
BpuMI	CCSGG	1 cut(s)	4026
BsaBI	GATNNNNATC	2 cut(s)	1047, 4722
BsaHI	GRCGYC	1 cut(s)	1765
BsaI	GGTCTC	1 cut(s)	2813
BsaJI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2442, 3305, 3510, 4900
BsaWI	WCCGGW	1 cut(s)	3835
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 1186, 1216, 1233, 1263, 4923, 4953
Bse118I	RCCGGY	1 cut(s)	1129
Bse1I	ACTGG	7 cut(s)	517, 976, 2165, 2309, 3700, 4025, 4430
Bse21I	CCTNAGG	1 cut(s)	3678
Bse3DI	GCAATG	4 cut(s)	2865, 2877, 3894, 4749
Bse8I	GATNNNNATC	2 cut(s)	1047, 4722
BseAI	TCCGGA	1 cut(s)	3835
BseBI	CCWGG	6 cut(s)	323, 444, 567, 696, 2444, 3411
BseDI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2442, 3305, 3510, 4900
BseGI	GGATG	8 cut(s)	909, 1675, 1933, 3832, 4075, 4711, 4741, 4745
BseJI	GATNNNNATC	2 cut(s)	1047, 4722
BseMI	GCAATG	4 cut(s)	2865, 2877, 3894, 4749
BseNI	ACTGG	7 cut(s)	517, 976, 2165, 2309, 3700, 4025, 4430
BseRI	GAGGAG	5 cut(s)	290, 357, 1621, 2591, 5056
BseSI	GKGCMC	5 cut(s)	48, 664, 1129, 2797, 4833
BseYI	CCCAGC	3 cut(s)	228, 755, 1428
BsgI	GTGCAG	3 cut(s)	2231, 2919, 4836
Bsh1236I	CGCG	1 cut(s)	4163
BshFI	GGCC	7 cut(s)	130, 1057, 2826, 3186, 3293, 3676, 4024
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	7 cut(s)	175, 664, 1129, 1735, 2956, 3930, 4833
BsiHKCI	CYCGRG	2 cut(s)	158, 4980
BsiSI	CCGG	4 cut(s)	879, 1130, 3836, 4026
BslFI	GGGAC	3 cut(s)	1627, 3079, 4902
BsmAI	GTCTC	9 cut(s)	615, 1253, 1305, 1467, 1691, 2813, 3373, 4363, 5092
BsmFI	GGGAC	3 cut(s)	1627, 3079, 4902
BsmI	GAATGC	2 cut(s)	10, 4818
BsnI	GGCC	7 cut(s)	130, 1057, 2826, 3186, 3293, 3676, 4024
Bso31I	GGTCTC	1 cut(s)	2813
BsoBI	CYCGRG	2 cut(s)	158, 4980
Bsp13I	TCCGGA	1 cut(s)	3835
Bsp1407I	TGTACA	2 cut(s)	2939, 4798
Bsp1720I	GCTNAGC	1 cut(s)	2640
Bsp19I	CCATGG	2 cut(s)	489, 4900
BspANI	GGCC	7 cut(s)	130, 1057, 2826, 3186, 3293, 3676, 4024
BspEI	TCCGGA	1 cut(s)	3835
BspFNI	CGCG	1 cut(s)	4163
BspLI	GGNNCC	9 cut(s)	45, 156, 2430, 2725, 3131, 3292, 3408, 3607, 4593
BspMAI	CTGCAG	2 cut(s)	3991, 5052
BspMI	ACCTGC	4 cut(s)	31, 1786, 4182, 4631
BspPI	GGATC	6 cut(s)	1037, 1956, 2257, 2669, 4047, 4102
BspQI	GCTCTTC	2 cut(s)	2322, 5068
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	2813
BsrDI	GCAATG	4 cut(s)	2865, 2877, 3894, 4749
BsrFI	RCCGGY	1 cut(s)	1129
BsrGI	TGTACA	2 cut(s)	2939, 4798
BsrI	ACTGG	7 cut(s)	517, 976, 2165, 2309, 3700, 4025, 4430
BssAI	RCCGGY	1 cut(s)	1129
BssECI	CCNNGG	9 cut(s)	442, 489, 695, 847, 856, 2442, 3305, 3510, 4900
BssNI	GRCGYC	1 cut(s)	1765
BssSI	CACGAG	2 cut(s)	135, 3039
BssT1I	CCWWGG	5 cut(s)	489, 847, 856, 3305, 4900
Bst2BI	CACGAG	2 cut(s)	135, 3039
Bst2UI	CCWGG	6 cut(s)	323, 444, 567, 696, 2444, 3411
Bst6I	CTCTTC	3 cut(s)	1639, 2322, 5068
BstACI	GRCGYC	1 cut(s)	1765
BstAPI	GCANNNNNTGC	1 cut(s)	4305
BstAUI	TGTACA	2 cut(s)	2939, 4798
BstDSI	CCRYGG	3 cut(s)	489, 3510, 4900
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	8 cut(s)	909, 1675, 1933, 3832, 4075, 4711, 4741, 4745
BstFNI	CGCG	1 cut(s)	4163
BstH2I	RGCGCY	1 cut(s)	3634
BstHHI	GCGC	5 cut(s)	16, 1989, 2050, 2967, 3633
BstMAI	GTCTC	9 cut(s)	615, 1253, 1305, 1467, 1691, 2813, 3373, 4363, 5092
BstNI	CCWGG	6 cut(s)	323, 444, 567, 696, 2444, 3411
BstPAI	GACNNNNGTC	1 cut(s)	4404
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	7 cut(s)	321, 442, 565, 694, 2442, 3409, 4024
BstSFI	CTRYAG	2 cut(s)	3987, 5048
BstSLI	GKGCMC	5 cut(s)	48, 664, 1129, 2797, 4833
BstUI	CGCG	1 cut(s)	4163
BstV2I	GAAGAC	1 cut(s)	3504
BstX2I	RGATCY	4 cut(s)	195, 2249, 4039, 5023
BstYI	RGATCY	4 cut(s)	195, 2249, 4039, 5023
Bsu36I	CCTNAGG	1 cut(s)	3678
BsuI	GTATCC	5 cut(s)	402, 2440, 2449, 3734, 4429
BsuRI	GGCC	7 cut(s)	130, 1057, 2826, 3186, 3293, 3676, 4024
BtgI	CCRYGG	3 cut(s)	489, 3510, 4900
BtsCI	GGATG	8 cut(s)	909, 1675, 1933, 3832, 4075, 4711, 4741, 4745
BtsI	GCAGTG	2 cut(s)	3984, 4258
BtsIMutI	CAGTG	9 cut(s)	463, 715, 757, 1874, 2822, 3984, 4258, 4419, 4437
BveI	ACCTGC	4 cut(s)	31, 1786, 4182, 4631
CaiI	CAGNNNCTG	1 cut(s)	2315
CfoI	GCGC	5 cut(s)	16, 1989, 2050, 2967, 3633
Cfr10I	RCCGGY	1 cut(s)	1129
CseI	GACGC	4 cut(s)	503, 1754, 4046, 4152
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
DraIII	CACNNNGTG	3 cut(s)	137, 458, 2948
EaeI	YGGCCR	2 cut(s)	2824, 3184
Eam1104I	CTCTTC	3 cut(s)	1639, 2322, 5068
EarI	CTCTTC	3 cut(s)	1639, 2322, 5068
Ecl136II	GAGCTC	3 cut(s)	173, 1733, 3928
Eco130I	CCWWGG	5 cut(s)	489, 847, 856, 3305, 4900
Eco147I	AGGCCT	1 cut(s)	3676
Eco24I	GRGCYC	4 cut(s)	175, 1735, 3930, 4126
Eco31I	GGTCTC	1 cut(s)	2813
Eco32I	GATATC	1 cut(s)	602
Eco47I	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3130, 4171, 4564
Eco53kI	GAGCTC	3 cut(s)	173, 1733, 3928
Eco57I	CTGAAG	4 cut(s)	1599, 1736, 2034, 2346
Eco81I	CCTNAGG	1 cut(s)	3678
Eco88I	CYCGRG	2 cut(s)	158, 4980
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	3 cut(s)	173, 1733, 3928
EcoO109I	RGGNCCY	2 cut(s)	1892, 4171
EcoO65I	GGTNACC	1 cut(s)	713
EcoRI	GAATTC	3 cut(s)	1165, 4469, 4905
EcoRII	CCWGG	6 cut(s)	321, 442, 565, 694, 2442, 3409
EcoRV	GATATC	1 cut(s)	602
EcoT14I	CCWWGG	5 cut(s)	489, 847, 856, 3305, 4900
EcoT22I	ATGCAT	3 cut(s)	1233, 1554, 2081
EcoT38I	GRGCYC	4 cut(s)	175, 1735, 3930, 4126
ErhI	CCWWGG	5 cut(s)	489, 847, 856, 3305, 4900
FaqI	GGGAC	3 cut(s)	1627, 3079, 4902
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	2 cut(s)	18, 3715
FbaI	TGATCA	5 cut(s)	141, 354, 504, 1273, 1813
FblI	GTMKAC	1 cut(s)	3450
FokI	GGATG	8 cut(s)	916, 1662, 1920, 3819, 4082, 4718, 4728, 4732
FriOI	GRGCYC	4 cut(s)	175, 1735, 3930, 4126
FspBI	CTAG	8 cut(s)	525, 1920, 3089, 3368, 3993, 4482, 4782, 4826
GlaI	GCGC	5 cut(s)	15, 1988, 2049, 2966, 3632
GsaI	CCCAGC	3 cut(s)	232, 759, 1432
GsuI	CTGGAG	6 cut(s)	657, 2292, 2763, 3432, 3717, 4950
HaeII	RGCGCY	1 cut(s)	3634
HaeIII	GGCC	7 cut(s)	130, 1057, 2826, 3186, 3293, 3676, 4024
HapII	CCGG	4 cut(s)	879, 1130, 3836, 4026
HgaI	GACGC	4 cut(s)	503, 1754, 4046, 4152
HhaI	GCGC	5 cut(s)	16, 1989, 2050, 2967, 3633
Hin1I	GRCGYC	1 cut(s)	1765
Hin6I	GCGC	5 cut(s)	14, 1987, 2048, 2965, 3631
HinP1I	GCGC	5 cut(s)	14, 1987, 2048, 2965, 3631
HincII	GTYRAC	5 cut(s)	301, 1440, 2275, 2763, 3451
HindII	GTYRAC	5 cut(s)	301, 1440, 2275, 2763, 3451
HindIII	AAGCTT	4 cut(s)	2523, 2909, 3150, 3866
HpaII	CCGG	4 cut(s)	879, 1130, 3836, 4026
HphI	GGTGA	8 cut(s)	1082, 1673, 3008, 3703, 3821, 3977, 4025, 4208
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	9 cut(s)	1883, 2009, 2557, 3554, 3799, 3962, 4210, 4435, 4696
HpyCH4IV	ACGT	2 cut(s)	2915, 4288
HpySE526I	ACGT	2 cut(s)	2915, 4288
Hsp92I	GRCGYC	1 cut(s)	1765
HspAI	GCGC	5 cut(s)	14, 1987, 2048, 2965, 3631
Kpn2I	TCCGGA	1 cut(s)	3835
Ksp22I	TGATCA	5 cut(s)	141, 354, 504, 1273, 1813
LguI	GCTCTTC	2 cut(s)	2322, 5068
LmnI	GCTCC	6 cut(s)	1326, 1730, 3413, 3605, 4182, 4597
LweI	GCATC	8 cut(s)	1539, 1619, 1684, 2661, 4142, 4753, 4844, 4934
MaeI	CTAG	8 cut(s)	525, 1920, 3089, 3368, 3993, 4482, 4782, 4826
MaeII	ACGT	2 cut(s)	2915, 4288
MfeI	CAATTG	5 cut(s)	957, 1277, 1685, 1772, 4870
MflI	RGATCY	4 cut(s)	195, 2249, 4039, 5023
MlsI	TGGCCA	1 cut(s)	2826
MluI	ACGCGT	1 cut(s)	4161
MluNI	TGGCCA	1 cut(s)	2826
MlyI	GAGTC	2 cut(s)	1693, 4507
MmeI	TCCRAC	3 cut(s)	1524, 1708, 4610
Mox20I	TGGCCA	1 cut(s)	2826
Mph1103I	ATGCAT	3 cut(s)	1233, 1554, 2081
MroI	TCCGGA	1 cut(s)	3835
MroXI	GAANNNNTTC	1 cut(s)	3489
MscI	TGGCCA	1 cut(s)	2826
MslI	CAYNNNNRTG	3 cut(s)	2089, 4263, 4840
Msp20I	TGGCCA	1 cut(s)	2826
MspA1I	CMGCKG	5 cut(s)	217, 296, 1054, 2720, 3475
MspI	CCGG	4 cut(s)	879, 1130, 3836, 4026
MspR9I	CCNGG	7 cut(s)	323, 444, 567, 696, 2444, 3411, 4026
MunI	CAATTG	5 cut(s)	957, 1277, 1685, 1772, 4870
Mva1269I	GAATGC	2 cut(s)	10, 4818
MvaI	CCWGG	6 cut(s)	323, 444, 567, 696, 2444, 3411
MvnI	CGCG	1 cut(s)	4163
NciI	CCSGG	1 cut(s)	4026
NcoI	CCATGG	2 cut(s)	489, 4900
NdeI	CATATG	2 cut(s)	18, 3715
NlaIV	GGNNCC	9 cut(s)	45, 156, 2430, 2725, 3131, 3292, 3408, 3607, 4593
NsiI	ATGCAT	3 cut(s)	1233, 1554, 2081
OliI	CACNNNNGTG	1 cut(s)	4263
PaeI	GCATGC	1 cut(s)	4254
PaeR7I	CTCGAG	1 cut(s)	4980
PaqCI	CACCTGC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	3676
PciI	ACATGT	3 cut(s)	558, 645, 1803
PciSI	GCTCTTC	2 cut(s)	2322, 5068
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	2 cut(s)	10, 4818
PdmI	GAANNNNTTC	1 cut(s)	3489
PflMI	CCANNNNNTGG	2 cut(s)	572, 2860
PfoI	TCCNGGA	1 cut(s)	3409
PleI	GAGTC	2 cut(s)	1693, 4506
PpsI	GAGTC	2 cut(s)	1693, 4506
PpuMI	RGGWCCY	2 cut(s)	1892, 4171
PscI	ACATGT	3 cut(s)	558, 645, 1803
PshAI	GACNNNNGTC	1 cut(s)	4404
PsiI	TTATAA	2 cut(s)	1211, 2619
Psp124BI	GAGCTC	3 cut(s)	175, 1735, 3930
Psp1406I	AACGTT	1 cut(s)	4288
Psp5II	RGGWCCY	2 cut(s)	1892, 4171
Psp6I	CCWGG	6 cut(s)	321, 442, 565, 694, 2442, 3409
PspEI	GGTNACC	1 cut(s)	713
PspFI	CCCAGC	3 cut(s)	228, 755, 1428
PspGI	CCWGG	6 cut(s)	321, 442, 565, 694, 2442, 3409
PspN4I	GGNNCC	9 cut(s)	45, 156, 2430, 2725, 3131, 3292, 3408, 3607, 4593
PspPPI	RGGWCCY	2 cut(s)	1892, 4171
PspXI	VCTCGAGB	1 cut(s)	4980
PstI	CTGCAG	2 cut(s)	3991, 5052
PstNI	CAGNNNCTG	1 cut(s)	2315
PsuI	RGATCY	4 cut(s)	195, 2249, 4039, 5023
PvuII	CAGCTG	2 cut(s)	296, 2720
RseI	CAYNNNNRTG	3 cut(s)	2089, 4263, 4840
SacI	GAGCTC	3 cut(s)	175, 1735, 3930
SalI	GTCGAC	1 cut(s)	3449
SapI	GCTCTTC	2 cut(s)	2322, 5068
SchI	GAGTC	2 cut(s)	1693, 4507
ScrFI	CCNGG	7 cut(s)	323, 444, 567, 696, 2444, 3411, 4026
SfaNI	GCATC	8 cut(s)	1539, 1619, 1684, 2661, 4142, 4753, 4844, 4934
SfcI	CTRYAG	2 cut(s)	3987, 5048
Sfr274I	CTCGAG	1 cut(s)	4980
SinI	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3130, 4171, 4564
SlaI	CTCGAG	1 cut(s)	4980
SmiMI	CAYNNNNRTG	3 cut(s)	2089, 4263, 4840
SmlI	CTYRAG	3 cut(s)	2660, 4460, 4980
SmoI	CTYRAG	3 cut(s)	2660, 4460, 4980
SphI	GCATGC	1 cut(s)	4254
SseBI	AGGCCT	1 cut(s)	3676
SspI	AATATT	2 cut(s)	3489, 3752
SspMI	CTAG	8 cut(s)	525, 1920, 3089, 3368, 3993, 4482, 4782, 4826
SstI	GAGCTC	3 cut(s)	175, 1735, 3930
StuI	AGGCCT	1 cut(s)	3676
StyD4I	CCNGG	7 cut(s)	321, 442, 565, 694, 2442, 3409, 4024
StyI	CCWWGG	5 cut(s)	489, 847, 856, 3305, 4900
TaiI	ACGT	2 cut(s)	2918, 4291
TaqI	TCGA	8 cut(s)	653, 1702, 3450, 3747, 3924, 4629, 4716, 4981
TatI	WGTACW	5 cut(s)	73, 2939, 3213, 4267, 4798
TauI	GCSGC	3 cut(s)	220, 1057, 2335
TscAI	CASTG	9 cut(s)	463, 715, 757, 1874, 2822, 3991, 4265, 4426, 4437
TspGWI	ACGGA	5 cut(s)	105, 1826, 3527, 4394, 4552
TspRI	CASTG	9 cut(s)	463, 715, 757, 1874, 2822, 3991, 4265, 4426, 4437
Van91I	CCANNNNNTGG	2 cut(s)	572, 2860
VneI	GTGCAC	3 cut(s)	660, 1125, 4829
VpaK11BI	GGWCC	7 cut(s)	154, 876, 1798, 1892, 3130, 4171, 4564
XbaI	TCTAGA	1 cut(s)	1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XhoI	CTCGAG	1 cut(s)	4980
XmiI	GTMKAC	1 cut(s)	3450
XmnI	GAANNNNTTC	1 cut(s)	3489
XspI	CTAG	8 cut(s)	525, 1920, 3089, 3368, 3993, 4482, 4782, 4826
Zsp2I	ATGCAT	3 cut(s)	1233, 1554, 2081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.