Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Reverse (-)

28969828 .. 28976891

Gene Structure 7064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36910.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

ATGGCAACGGAGAGTCTAATGAGAATGGTGGAAAACCGTAAAGGTGAAAAGTGGCATTCTTCGATGGATACTGCAACATTTGGATCTCCATTGAGAAGTACGGCAGCAGAAGAATTGGGCTTCCTCTCGAAGATGCATAGAAGTCAGAGAGATAGAGCTGAAGCCATACCTAATCGAAGTGGCAGTGCTCCTCCAAGTATGGAGGGTTCCTTTTATGCTATTGGGAACCTTTTAAGTCAACAGAACTCCAATGTGCAAACAAGGCCTCCTCCACGCAATGTTGGTGGTTCCAGCATCGATTGGAGATTGACTTCTTTAGACGACAGTGGCAACGGATCCTTCCATCTTTCTCAAGGTTCTCTTTCCACTCACAAGGAGGAGCTTGATGAGGCTAGTTCATCCAGGCAAGCTTCAGATAATTTGGCAGACAATAGTGGTTCAGCAGTGGCAGTGAAGAACACTCATTCTTTGGCTAGTCATAATAAGAGTTTACTGGATCGCATACAGGAAGACTTCCCCCGAACTCCATCTCCTGTGTATAATCATTCTGTCTCATCAAGTATTGCAACAGATGAACTGGTTGATAGTGATGTACATTCATTTTCACCCAATGCTTCTTCTCCTAATATGCCACAATTACAAGTCTCTAATCCAGGCTCTACCAACATATATCCGGAGACAAGTTCCTTGACTACCACTTCTCCCAATGAGACAGGGAACTTGCATGATGATGAATCAAGTATTGAGGATTCAGGGGAGGGGAGTAATAGATCCATCGGTGGAGCCCATGGGTTAGATCTTTCCCCAACCAGGTCCGGAAATAGAGCATCTAATATTGATATAAACAATAACAAACAACATGAGAAAAATTCTTATGGGATGGGTGTGCTGCAACACCATTTGTCTACACAACAAGGCATGCTGTATCAACTTCAGGCTGTTCAGGACCAAGTAGTTTCACAAGCAGGGTATATGACTTCAGGAAATGCTTTCTACCCCAATTTTCAGCCGTCCAGTGTATATCCTGCACAATATGGTGTCAGTGGATATGCTGTGGGTTCTACAATGATTCCCCCATACATGGCTGCGTACCCTTCTCATGGTTCCTTTCCTCCGCCTTTTGATGCTACTTTGGGTCAAAGCTTACATGGTCGAGCTGCAGGTGTTTCAACAGGGGAGAGAAGTCCCCATGAAGGTGATTTGCATCAGCTAAGCAAGTTTTATGGGCAACATGGGCCAATGCTCCAGCCATCTTTTCTTGATCCCTTAAGTATGCAATACTATTCACGTCCCTTGGATGATTCATATAGTGCTTCAAGTCGGTATGGTCTTTTAAGTCCAAGGGGTATTATTGGAGGCCAGCTTTACCAACAACAATCAAATGTTACTGCATATGCAGGTGACCAGAATTTTCTGTCTCCAACTAATGGGTCTTTGAGCATTCCAAGTCCAAGAAAAATGGTAGTCAATGGTAGTGGTTATTATGGTAGTCCTTCTAGCATGGGTGGCATGACATTTCCAGCCTCACCTCTTGGTAGTCCTGTGCCACCATCATCTCCAGCAGGCAGAACACATCACCATGGTCGGCAAAATGAATCGAGGTATCCTCAAGGATCGATTAGGAATGGTGGACTATATTCTGGGTGGCAAGGACAGAGAAGCTTTAATAACTTTGAGGACTCTAAAAGGCACTCCTTTCTTGAAGAACTGAAATCCAGTAATGCCCATAAATTTGAACTCTCTGATATAGCAGGGCGCATTGCTGAATTCAGTGTGGATCAACACGGGAGTAGATTTATTCAGCAAAAGCTCGAACACTGCAGTGACGAAGACAAGGCATCTGTATTTAAAGAGGTTCTTCCAACTGCTTCAAGATTAATGACTGATGTATTTGGGAATTATGTTATTCAAAAGTTTTTTGAGTATGGGACTCCTGAGCAGAAAAAGGAGCTTGCAGATCAACTCAGTGGACAGATGTTGCCTTTAAGTTTGCAGATGTATGGTTGTCGTGTGATCCAGAAGGCTCTTGAAGTGATTGAGGTTGACCAGAAAACAAAACTTGTGCATGAGCTTGATGGACAAGTTATGAAATGCGTACGTGATCAGAATGGAAATCATGTGATACAGAAGTGTATAGAATGCATTCCTACAGAGAAAATTGAATTCATCATATCTTCTTTCCAAGGCGAAGTTGCCACACTTTCTACTCATCCATATGGTTGCCGTGTCATACAGAGAGTTTTGGAGCGCTGTTCAGATGAGCTTCAAGGTCAATGTGTTGTAGATGAGATCTTGGAATCTGCTTATGTTCTTGCTCAAAACCAGTATGGCAATTATGTCACACAGCATGTTCTGGAAAGGGGAAAACCCTATGAAAGAAGCCAAATTATCAGCAAGTTGATTGGGAAAATTGTGCAATTGAGTCAGCATAAATATGCATCAAATGTTATTGAAAAGTGTTTAGAGCATGGTGATGTTGCTGAGCGAAAGATTATGATTGACGAAATCATTGGACAGTTGGAGGAAAATGATAACCTATTGCCAATGATGAAGGACCAATTTGCAAATTATGTGATCCAGAAGGTTCTTGAGACAAGCAACGAGAAGCAGCGGAAGATACTTCTGAGTCTAATAAGAGTTCATCTTGACGCTCTTAAAAAATATACCTATGGAAAACACATAGTTGTTCGATTTGAACAACTATCTGTTGAAGATAGTCAAAAATCGGTAGCTGACGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

915

Amino Acids

100.71

Weight (kDa)

5.96

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	159 - 411	6.1e-14	Nucleic acid binding protein NABP
PUF	PF00806	417 - 450	4.6e-12	Pumilio-family RNA binding repeat
PUF	PF00806	456 - 485	6.5e-09	Pumilio-family RNA binding repeat
PUF	PF00806	489 - 521	2.4e-08	Pumilio-family RNA binding repeat
PUF_NOP9	PF22493	525 - 604	1.3e-06	NOP9-like PUF repeat domain
PUF	PF00806	561 - 595	2.2e-11	Pumilio-family RNA binding repeat
PUF	PF00806	599 - 631	4e-06	Pumilio-family RNA binding repeat
PUF	PF00806	634 - 667	9.4e-12	Pumilio-family RNA binding repeat
PUF	PF00806	677 - 708	8.1e-08	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1151, 1388
Acc36I	ACCTGC	2 cut(s)	1151, 1388
AccB7I	CCANNNNNTGG	1 cut(s)	1427
AccI	GTMKAC	1 cut(s)	905
AccIII	TCCGGA	2 cut(s)	673, 815
AciI	CCGC	2 cut(s)	1115, 2611
AcsI	RAATTY	5 cut(s)	868, 1408, 1730, 1766, 2162
AcuI	CTGAAG	4 cut(s)	180, 396, 917, 963
AfaI	GTAC	4 cut(s)	100, 594, 1091, 2097
AfeI	AGCGCT	1 cut(s)	2249
AfiI	CCNNNNNNNGG	5 cut(s)	810, 1081, 1100, 1193, 1427
AflII	CTTAAG	1 cut(s)	1267
AjiI	CACGTC	1 cut(s)	1289
AjnI	CCWGG	3 cut(s)	401, 652, 809
AleI	CACNNNNGTG	1 cut(s)	1821
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	6 cut(s)	556, 649, 671, 704, 1422, 2585
Aor13HI	TCCGGA	2 cut(s)	673, 815
Aor51HI	AGCGCT	1 cut(s)	2249
AoxI	GGCC	3 cut(s)	263, 1235, 1357
ApeKI	GCWGC	5 cut(s)	104, 889, 1085, 1157, 2608
ApoI	RAATTY	5 cut(s)	868, 1408, 1730, 1766, 2162
AseI	ATTAAT	1 cut(s)	1877
Asp700I	GAANNNNTTC	1 cut(s)	2142
AspLEI	GCGC	2 cut(s)	1758, 2250
AspS9I	GGNCC	4 cut(s)	813, 946, 1235, 2554
AsuHPI	GGTGA	7 cut(s)	56, 597, 1208, 1412, 1518, 1568, 2483
AvaII	GGWCC	3 cut(s)	813, 946, 2554
BaeI	ACNNNNGTAYC	2 cut(s)	2114, 2147
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	787
BbsI	GAAGAC	2 cut(s)	516, 1836
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	5 cut(s)	116, 876, 1072, 1144, 2620
BccI	CCATC	8 cut(s)	58, 351, 535, 782, 874, 1258, 1558, 2069
BceAI	ACGGC	3 cut(s)	117, 994, 2208
BciT130I	CCWGG	3 cut(s)	403, 654, 811
BciVI	GTATCC	2 cut(s)	61, 1614
BclI	TGATCA	1 cut(s)	2101
BcoDI	GTCTC	6 cut(s)	556, 649, 671, 704, 1422, 2585
BfaI	CTAG	3 cut(s)	393, 474, 1497
BfmI	CTRYAG	3 cut(s)	1158, 1819, 2148
BfoI	RGCGCY	1 cut(s)	2251
BfrI	CTTAAG	1 cut(s)	1267
BfuAI	ACCTGC	2 cut(s)	1151, 1388
BfuI	GTATCC	2 cut(s)	61, 1614
BglII	AGATCT	2 cut(s)	796, 2289
BisI	GCNGC	5 cut(s)	105, 890, 1086, 1158, 2609
BlpI	GCTNAGC	2 cut(s)	1211, 2481
BlsI	GCNGC	5 cut(s)	106, 891, 1087, 1159, 2610
Bme1390I	CCNGG	3 cut(s)	403, 654, 811
Bme18I	GGWCC	3 cut(s)	813, 946, 2554
BmgBI	CACGTC	1 cut(s)	1289
BmgT120I	GGNCC	4 cut(s)	813, 946, 1235, 2554
BmiI	GGNNCC	6 cut(s)	208, 227, 289, 337, 784, 1105
BmrFI	CCNGG	3 cut(s)	403, 654, 811
BmsI	GCATC	7 cut(s)	123, 303, 836, 1114, 1213, 1847, 2447
BpiI	GAAGAC	2 cut(s)	516, 1836
BplI	GAGNNNNNCTC	2 cut(s)	1591, 1623
BpmI	CTGGAG	2 cut(s)	1229, 1542
Bpu10I	CCTNAGC	1 cut(s)	1935
Bpu1102I	GCTNAGC	2 cut(s)	1211, 2481
BpuEI	CTTGAG	3 cut(s)	336, 1593, 2609
Bsa29I	ATCGAT	2 cut(s)	297, 1616
BsaAI	YACGTR	1 cut(s)	2099
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	5 cut(s)	787, 1293, 1340, 1579, 2182
BsaWI	WCCGGW	2 cut(s)	673, 815
BsaXI	ACNNNNNCTCC	6 cut(s)	250, 280, 514, 544, 685, 715
Bsc4I	CCNNNNNNNGG	5 cut(s)	810, 1081, 1100, 1193, 1427
Bse1I	ACTGG	5 cut(s)	498, 582, 1014, 1716, 2323
Bse3DI	GCAATG	2 cut(s)	283, 1758
Bse8I	GATNNNNATC	1 cut(s)	1203
BseAI	TCCGGA	2 cut(s)	673, 815
BseBI	CCWGG	3 cut(s)	403, 654, 811
BseCI	ATCGAT	2 cut(s)	297, 1616
BseDI	CCNNGG	5 cut(s)	787, 1293, 1340, 1579, 2182
BseGI	GGATG	4 cut(s)	398, 885, 1303, 2209
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	5 cut(s)	810, 1081, 1100, 1193, 1427
BseMI	GCAATG	2 cut(s)	283, 1758
BseMII	CTCAG	4 cut(s)	1926, 1978, 2472, 2615
BseNI	ACTGG	5 cut(s)	498, 582, 1014, 1716, 2323
BseRI	GAGGAG	3 cut(s)	180, 258, 392
BseXI	GCAGC	5 cut(s)	116, 876, 1072, 1144, 2620
BsgI	GTGCAG	1 cut(s)	1011
BshFI	GGCC	3 cut(s)	265, 1237, 1359
BshVI	ATCGAT	2 cut(s)	297, 1616
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	674, 816
BsiWI	CGTACG	1 cut(s)	2095
BslFI	GGGAC	3 cut(s)	1170, 1275, 1942
BslI	CCNNNNNNNGG	5 cut(s)	810, 1081, 1100, 1193, 1427
BsmAI	GTCTC	6 cut(s)	556, 649, 671, 704, 1422, 2585
BsmFI	GGGAC	3 cut(s)	1170, 1275, 1942
BsmI	GAATGC	4 cut(s)	55, 1440, 2142, 2144
BsnI	GGCC	3 cut(s)	265, 1237, 1359
Bsp1286I	GDGCHC	2 cut(s)	190, 787
Bsp13I	TCCGGA	2 cut(s)	673, 815
Bsp1407I	TGTACA	1 cut(s)	592
Bsp1720I	GCTNAGC	2 cut(s)	1211, 2481
Bsp19I	CCATGG	2 cut(s)	787, 1579
BspACI	CCGC	2 cut(s)	1115, 2611
BspANI	GGCC	3 cut(s)	265, 1237, 1359
BspCNI	CTCAG	4 cut(s)	1927, 1977, 2473, 2616
BspDI	ATCGAT	2 cut(s)	297, 1616
BspEI	TCCGGA	2 cut(s)	673, 815
BspLI	GGNNCC	6 cut(s)	208, 227, 289, 337, 784, 1105
BspMAI	CTGCAG	2 cut(s)	1162, 1823
BspMI	ACCTGC	2 cut(s)	1151, 1388
BspTI	CTTAAG	1 cut(s)	1267
BsrDI	GCAATG	2 cut(s)	283, 1758
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	5 cut(s)	498, 582, 1014, 1716, 2323
BssECI	CCNNGG	5 cut(s)	787, 1293, 1340, 1579, 2182
BssT1I	CCWWGG	5 cut(s)	787, 1293, 1340, 1579, 2182
Bst2UI	CCWGG	3 cut(s)	403, 654, 811
Bst4CI	ACNGT	3 cut(s)	38, 326, 2517
BstAFI	CTTAAG	1 cut(s)	1267
BstAUI	TGTACA	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	2099
BstC8I	GCNNGC	5 cut(s)	408, 920, 1361, 1564, 1953
BstDEI	CTNAG	5 cut(s)	1211, 1935, 1964, 2481, 2624
BstDSI	CCRYGG	2 cut(s)	787, 1579
BstEII	GGTNACC	1 cut(s)	1400
BstF5I	GGATG	4 cut(s)	398, 885, 1303, 2209
BstH2I	RGCGCY	1 cut(s)	2251
BstHHI	GCGC	2 cut(s)	1758, 2250
BstMAI	GTCTC	6 cut(s)	556, 649, 671, 704, 1422, 2585
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 1234, 1506, 2738
BstNI	CCWGG	3 cut(s)	403, 654, 811
BstNSI	RCATGY	2 cut(s)	922, 2351
BstPI	GGTNACC	1 cut(s)	1400
BstSCI	CCNGG	3 cut(s)	401, 652, 809
BstSFI	CTRYAG	3 cut(s)	1158, 1819, 2148
BstV1I	GCAGC	5 cut(s)	116, 876, 1072, 1144, 2620
BstV2I	GAAGAC	2 cut(s)	516, 1836
BstX2I	RGATCY	5 cut(s)	83, 335, 770, 796, 2289
BstYI	RGATCY	5 cut(s)	83, 335, 770, 796, 2289
Bsu15I	ATCGAT	2 cut(s)	297, 1616
BsuI	GTATCC	2 cut(s)	61, 1614
BsuRI	GGCC	3 cut(s)	265, 1237, 1359
BsuTUI	ATCGAT	2 cut(s)	297, 1616
BtgI	CCRYGG	2 cut(s)	787, 1579
BtrI	CACGTC	1 cut(s)	1289
BtsCI	GGATG	4 cut(s)	398, 885, 1303, 2209
BtsI	GCAGTG	5 cut(s)	190, 450, 456, 1816, 1828
BveI	ACCTGC	2 cut(s)	1151, 1388
Cac8I	GCNNGC	5 cut(s)	408, 920, 1361, 1564, 1953
CfoI	GCGC	2 cut(s)	1758, 2250
Cfr13I	GGNCC	4 cut(s)	813, 946, 1235, 2554
ClaI	ATCGAT	2 cut(s)	297, 1616
CseI	GACGC	1 cut(s)	2657
CsiI	ACCWGGT	1 cut(s)	809
Csp6I	GTAC	4 cut(s)	99, 593, 1090, 2096
CspCI	CAANNNNNGTGG	4 cut(s)	265, 300, 1456, 1491
CviQI	GTAC	4 cut(s)	99, 593, 1090, 2096
DdeI	CTNAG	5 cut(s)	1211, 1935, 1964, 2481, 2624
DraI	TTTAAA	1 cut(s)	1849
EciI	GGCGGA	1 cut(s)	1104
Eco130I	CCWWGG	5 cut(s)	787, 1293, 1340, 1579, 2182
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	787
Eco47I	GGWCC	3 cut(s)	813, 946, 2554
Eco47III	AGCGCT	1 cut(s)	2249
Eco57I	CTGAAG	4 cut(s)	180, 396, 917, 963
Eco91I	GGTNACC	1 cut(s)	1400
EcoO65I	GGTNACC	1 cut(s)	1400
EcoRI	GAATTC	2 cut(s)	1766, 2162
EcoRII	CCWGG	3 cut(s)	401, 652, 809
EcoT14I	CCWWGG	5 cut(s)	787, 1293, 1340, 1579, 2182
EcoT22I	ATGCAT	3 cut(s)	138, 2144, 2440
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	5 cut(s)	787, 1293, 1340, 1579, 2182
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 1842, 1874
FaqI	GGGAC	3 cut(s)	1170, 1275, 1942
FauNDI	CATATG	2 cut(s)	1393, 2215
FbaI	TGATCA	1 cut(s)	2101
FblI	GTMKAC	1 cut(s)	905
Fnu4HI	GCNGC	5 cut(s)	105, 890, 1086, 1158, 2609
FokI	GGATG	4 cut(s)	385, 892, 1310, 2196
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	5 cut(s)	105, 890, 1086, 1158, 2609
FspBI	CTAG	3 cut(s)	393, 474, 1497
GlaI	GCGC	2 cut(s)	1757, 2249
GluI	GCNGC	5 cut(s)	105, 890, 1086, 1158, 2609
GsuI	CTGGAG	2 cut(s)	1229, 1542
HaeII	RGCGCY	1 cut(s)	2251
HaeIII	GGCC	3 cut(s)	265, 1237, 1359
HapII	CCGG	2 cut(s)	674, 816
HgaI	GACGC	1 cut(s)	2657
HhaI	GCGC	2 cut(s)	1758, 2250
Hin6I	GCGC	2 cut(s)	1756, 2248
HinP1I	GCGC	2 cut(s)	1756, 2248
HincII	GTYRAC	2 cut(s)	239, 2044
HindII	GTYRAC	2 cut(s)	239, 2044
HindIII	AAGCTT	3 cut(s)	408, 1141, 1660
HpaII	CCGG	2 cut(s)	674, 816
HphI	GGTGA	7 cut(s)	56, 597, 1208, 1412, 1518, 1568, 2483
Hpy166II	GTNNAC	6 cut(s)	239, 491, 906, 1631, 1970, 2044
Hpy188I	TCNGA	6 cut(s)	147, 415, 1744, 2106, 2257, 2625
Hpy8I	GTNNAC	6 cut(s)	239, 491, 906, 1631, 1970, 2044
HpyAV	CCTTC	7 cut(s)	349, 1104, 1187, 1503, 2014, 2545, 2575
HpyCH4III	ACNGT	3 cut(s)	38, 326, 2517
HpyCH4IV	ACGT	2 cut(s)	1288, 2098
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 1234, 1506, 2738
HpyF3I	CTNAG	5 cut(s)	1211, 1935, 1964, 2481, 2624
HpySE526I	ACGT	2 cut(s)	1288, 2098
HspAI	GCGC	2 cut(s)	1756, 2248
Kpn2I	TCCGGA	2 cut(s)	673, 815
Ksp22I	TGATCA	1 cut(s)	2101
LmnI	GCTCC	6 cut(s)	193, 379, 782, 1248, 1948, 2245
Lsp1109I	GCAGC	5 cut(s)	116, 876, 1072, 1144, 2620
LweI	GCATC	7 cut(s)	123, 303, 836, 1114, 1213, 1847, 2447
MabI	ACCWGGT	1 cut(s)	809
MaeI	CTAG	3 cut(s)	393, 474, 1497
MaeII	ACGT	2 cut(s)	1288, 2098
MaeIII	GTNAC	4 cut(s)	1384, 1400, 1823, 2338
MfeI	CAATTG	1 cut(s)	2417
MflI	RGATCY	5 cut(s)	83, 335, 770, 796, 2289
MhlI	GDGCHC	2 cut(s)	190, 787
MlyI	GAGTC	5 cut(s)	22, 1673, 1924, 2431, 2635
MmeI	TCCRAC	3 cut(s)	1445, 1886, 2499
Mph1103I	ATGCAT	3 cut(s)	138, 2144, 2440
MroI	TCCGGA	2 cut(s)	673, 815
MroXI	GAANNNNTTC	1 cut(s)	2142
MseI	TTAA	8 cut(s)	233, 1268, 1334, 1665, 1848, 1877, 1985, 2655
MslI	CAYNNNNRTG	7 cut(s)	729, 1194, 1578, 1821, 2214, 2433, 2472
MspA1I	CMGCKG	1 cut(s)	2611
MspCI	CTTAAG	1 cut(s)	1267
MspI	CCGG	2 cut(s)	674, 816
MspR9I	CCNGG	3 cut(s)	403, 654, 811
MunI	CAATTG	1 cut(s)	2417
Mva1269I	GAATGC	4 cut(s)	55, 1440, 2142, 2144
MvaI	CCWGG	3 cut(s)	403, 654, 811
MwoI	GCNNNNNNNGC	4 cut(s)	262, 1234, 1506, 2738
NcoI	CCATGG	2 cut(s)	787, 1579
NdeI	CATATG	2 cut(s)	1393, 2215
NlaIV	GGNNCC	6 cut(s)	208, 227, 289, 337, 784, 1105
NmuCI	GTSAC	3 cut(s)	1400, 1823, 2338
NsiI	ATGCAT	3 cut(s)	138, 2144, 2440
NspI	RCATGY	2 cut(s)	922, 2351
OliI	CACNNNNGTG	1 cut(s)	1821
PaeI	GCATGC	1 cut(s)	922
PaqCI	CACCTGC	2 cut(s)	1151, 1388
PceI	AGGCCT	1 cut(s)	265
PctI	GAATGC	4 cut(s)	55, 1440, 2142, 2144
PdmI	GAANNNNTTC	1 cut(s)	2142
PfeI	GAWTC	6 cut(s)	734, 749, 1069, 1301, 1595, 2297
Pfl23II	CGTACG	1 cut(s)	2095
PflMI	CCANNNNNTGG	1 cut(s)	1427
PkrI	GCNGC	5 cut(s)	106, 891, 1087, 1159, 2610
PleI	GAGTC	5 cut(s)	21, 1673, 1924, 2430, 2634
PpsI	GAGTC	5 cut(s)	21, 1673, 1924, 2430, 2634
Ppu21I	YACGTR	1 cut(s)	2099
PshBI	ATTAAT	1 cut(s)	1877
Psp6I	CCWGG	3 cut(s)	401, 652, 809
PspEI	GGTNACC	1 cut(s)	1400
PspGI	CCWGG	3 cut(s)	401, 652, 809
PspLI	CGTACG	1 cut(s)	2095
PspN4I	GGNNCC	6 cut(s)	208, 227, 289, 337, 784, 1105
PspPI	GGNCC	4 cut(s)	813, 946, 1235, 2554
PsrI	GAACNNNNNNTAC	2 cut(s)	190, 222
PstI	CTGCAG	2 cut(s)	1162, 1823
PsuI	RGATCY	5 cut(s)	83, 335, 770, 796, 2289
RsaI	GTAC	4 cut(s)	100, 594, 1091, 2097
RsaNI	GTAC	4 cut(s)	99, 593, 1090, 2096
RseI	CAYNNNNRTG	7 cut(s)	729, 1194, 1578, 1821, 2214, 2433, 2472
SaqAI	TTAA	8 cut(s)	233, 1268, 1334, 1665, 1848, 1877, 1985, 2655
SatI	GCNGC	5 cut(s)	105, 890, 1086, 1158, 2609
Sau96I	GGNCC	4 cut(s)	813, 946, 1235, 2554
SchI	GAGTC	5 cut(s)	22, 1673, 1924, 2431, 2635
ScrFI	CCNGG	3 cut(s)	403, 654, 811
SduI	GDGCHC	2 cut(s)	190, 787
SexAI	ACCWGGT	1 cut(s)	809
SfaNI	GCATC	7 cut(s)	123, 303, 836, 1114, 1213, 1847, 2447
SfcI	CTRYAG	3 cut(s)	1158, 1819, 2148
SinI	GGWCC	3 cut(s)	813, 946, 2554
SmiMI	CAYNNNNRTG	7 cut(s)	729, 1194, 1578, 1821, 2214, 2433, 2472
SmlI	CTYRAG	4 cut(s)	351, 1267, 1608, 2588
SmoI	CTYRAG	4 cut(s)	351, 1267, 1608, 2588
SphI	GCATGC	1 cut(s)	922
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	1115, 2611
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	3 cut(s)	393, 474, 1497
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	3 cut(s)	401, 652, 809
StyI	CCWWGG	5 cut(s)	787, 1293, 1340, 1579, 2182
TaaI	ACNGT	3 cut(s)	38, 326, 2517
TaiI	ACGT	2 cut(s)	1291, 2101
TaqI	TCGA	9 cut(s)	62, 128, 175, 297, 1153, 1598, 1616, 1812, 2689
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	6 cut(s)	734, 749, 1069, 1301, 1595, 2297
Tru1I	TTAA	8 cut(s)	233, 1268, 1334, 1665, 1848, 1877, 1985, 2655
Tru9I	TTAA	8 cut(s)	233, 1268, 1334, 1665, 1848, 1877, 1985, 2655
TseFI	GTSAC	3 cut(s)	1400, 1823, 2338
TseI	GCWGC	5 cut(s)	104, 889, 1085, 1157, 2608
Tsp45I	GTSAC	3 cut(s)	1400, 1823, 2338
TspGWI	ACGGA	2 cut(s)	23, 348
Van91I	CCANNNNNTGG	1 cut(s)	1427
Vha464I	CTTAAG	1 cut(s)	1267
VpaK11BI	GGWCC	3 cut(s)	813, 946, 2554
VspI	ATTAAT	1 cut(s)	1877
XapI	RAATTY	5 cut(s)	868, 1408, 1730, 1766, 2162
XceI	RCATGY	2 cut(s)	922, 2351
XmiI	GTMKAC	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	2142
XspI	CTAG	3 cut(s)	393, 474, 1497
Zsp2I	ATGCAT	3 cut(s)	138, 2144, 2440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.