Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Forward (+)

19396242 .. 19401160

Gene Structure 4919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGCAACGGAGAGTCTCATGAGAATGGTGGAAAGCCGTAAAGGTGAAAAGTGGCATTCATCGATGGATGCGGCAACATATGGATCTCCACTGAAAAGTACGGCAGCAGAGGAATTGGGCTTCCTTACAAAGGGGCACAGATTTCGGAGAGATAGAGCTGAGGCCATACCTAATCGAAGTGGTTCTCTTTCCACTCACAAGGATGAGCTTGATGATGCTAGTTCATCCAAGCAAGCTTCAGATAATTTGGCAGAAAATAGTGTTTCAGCAATGGCGGTGAAGAACACTCATTCTTTGGCAAGCCATAATAAGAGTGTGCTGGATCGCATACAGGAAGACTTCCCCCGAACTCCATCTCCTCTGTATAATCAATCTGTCTCATCAAGTATTGCAACAGATGAACCGGTTGATATTGATGTACATTCAATTTCACCAAATGCTTCTTCTCCTAACATACGACAATTACAATCCTCAAATTCAGGCTCTATCGACATATATCCGGAGACAAGTTCCTTGACTACCTCTTCTCCTAGGGCACTACATCCTAATGAGACAGGGAACTTACATGAAGATGAATCAAATATTGAGGATACTGGGGTGGGGAGTAATGGATCAATTGGTGGAGCCCTTGGGTTAGATCTTTCCCCAACTGGGTCTAGAATTAGAGCATCTAATATTAACAAACAACATGAGAAACACTCTTATGGGACGGGTGTGCTACAACACCTTTTGTCTACACAACAAGGGTTGCCATATCAACTTCAGGCTGTTCAGGACCAAGCAGTTTCACAAGGTATGAATCATTGGCAAAGTAGAATGGATCCCCATGGCTATCCAAAGTTCTCTTCCTTTGAGGTACAGCCATCATTGCAATCACCTGGATTCACACCTCCCTTGTATGCTACAACAGCAGGGTATATGACTTCAGGAAGTGCTTTCTACCCCAATTTTCAGCCGTCCAGTATATATCCTGCACAATATGGTGCGAGTGGATATGCCATGGGTTCTACATTTCTTCCCCCATATATGGCTGCGTACCATTCTCATGGTTCCTTTCCTCTGCCTTTTGATGCTACTTTGGGTCAAAGCTTAAATGGTCGAACTGCAGGTCCGAGGGGTATTATTGGAGGCCAGCTTTACCAACAAGAGTCAAATGTTACTGCATATGCAGGTGACCAGAAATTTCAGTCTCCAACTAATGGATCTCTGGGCATTCCAAGTCCAAGAAAAATGGGAATCAATGGTAGTGGTTATTATGGTAGTCCTTCTAGCATGGGTGGCATGACATTTCCAGCCTCACCTCTTGGTAGTCCTATACCACCATCATCTCCAGTAGGCAGAACACATCACCATGGTCGGCAAAATGAATCGAGGTATCACCAAGGTTCAATAAGAAATGGTGGACTATATTCTGGGTGGCAAGGACAGAGAAGCTTTAACAACTTTGAGGACTCTAAAAGGCACTCCTTTCTTGAAGAACTGAAATCCAGTAATGCCCGTAAATTTGAACTCTCTGATATAGCAGGGCGCATTGCTGAATTCAGTGTGGATCAGCATGGGAGTCGATTTATTCAGCAGAAGCTTGAATACTGCAGTGTCGAAGACAAAGGCTTTTTTGAGTATGGGACTCCTGAGCAGAAAAAGGAGCTTGCAGATCAACTCAGTGGACAGATGTTGCCTTTAAGTTTGCAGATGTATGGTTGTCGTGTGATCCAGAAGGCTCTTGAAGTTATAGAGGTTGACCAGAAAACACAACTTGTGCATGAGCTTGATGGACATGTTACGAAATGTGTGCATGATCAAAATGGAAATCATGTCATACAGAAGTGTATAGAATGCATTCCTACAGAGAAAATTGGATTCATCATATCTTCTTTCCGAGACCAAGTTGCCAAACTTTCTACTCATCCATATGGTTGCCGTGTCATACAGAGAGTTTTGGAGCATTGTTCAGATGAGCTTCAAGGTCAGTGTGTTGTGGATGAGATTTTGGAATCTGCTTATGTTCTTGCTCAGAACCAGTATGGCAATTATGTCACCCAGCATGTTCTGGAAAAGGGAAAACCCCATGAAAGAAGCCAAATTATCAGCAAGTTGATCGGGAAAGTTGTACAATTGAGTCAGCATAAATATGCATCAAATGTTATTGAAAAGTGTTTAGAGCATGGTGATGTTGCTGAGCGGGAGCTTATGATTGACGAAATCATTGGACAGTTGGAGGAAAATGATAATCTATTGTGTGAAATGCAAGAACATATCCAAATTGAACAAACACTGCATGGTGATGTGATTGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

766

Amino Acids

84.15

Weight (kDa)

5.91

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	404 - 505	2.9e-12	Nucleic acid binding protein NABP
PUF	PF00806	511 - 536	2.3e-08	Pumilio-family RNA binding repeat
PUF	PF00806	558 - 590	8.7e-09	Pumilio-family RNA binding repeat
PUF	PF00806	629 - 664	2.4e-12	Pumilio-family RNA binding repeat
PUF	PF00806	668 - 700	8.9e-07	Pumilio-family RNA binding repeat
PUF	PF00806	703 - 736	7.8e-12	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1160
Acc36I	ACCTGC	2 cut(s)	1097, 1160
AccB7I	CCANNNNNTGG	1 cut(s)	1199
AccBSI	CCGCTC	1 cut(s)	2182
AccI	GTMKAC	1 cut(s)	734
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	3 cut(s)	71, 275, 2182
AclWI	GGATC	8 cut(s)	91, 330, 619, 815, 828, 1210, 1557, 1705
AcsI	RAATTY	4 cut(s)	475, 1181, 1502, 1538
AcuI	CTGAAG	3 cut(s)	222, 746, 909
AfaI	GTAC	5 cut(s)	100, 420, 858, 1037, 2112
AfiI	CCNNNNNNNGG	4 cut(s)	130, 651, 1027, 1199
AflIII	ACRYGT	1 cut(s)	1777
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	9 cut(s)	426, 1389, 1475, 1508, 1586, 1727, 1964, 2150, 2267
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	4 cut(s)	427, 459, 829, 861
AloI	GAACNNNNNNTCC	4 cut(s)	340, 372, 1093, 1125
Alw26I	GTCTC	6 cut(s)	20, 382, 497, 545, 1194, 1875
AlwI	GGATC	8 cut(s)	91, 330, 619, 815, 828, 1210, 1557, 1705
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	2 cut(s)	162, 1129
ApeKI	GCWGC	2 cut(s)	104, 1031
ApoI	RAATTY	4 cut(s)	475, 1181, 1502, 1538
ArsI	GACNNNNNNTTYG	2 cut(s)	1093, 1125
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	2 cut(s)	181, 1839
AspA2I	CCTAGG	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	1530
AspS9I	GGNCC	2 cut(s)	775, 1109
AvaII	GGWCC	2 cut(s)	775, 1109
AvrII	CCTAGG	1 cut(s)	530
BaeGI	GKGCMC	2 cut(s)	138, 538
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BamHI	GGATCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	628
BarI	GAAGNNNNNNTAC	2 cut(s)	1571, 1603
BbsI	GAAGAC	2 cut(s)	342, 1608
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	116, 1018
BccI	CCATC	5 cut(s)	58, 361, 871, 1330, 1766
BceAI	ACGGC	4 cut(s)	21, 117, 940, 1905
BcgI	CGANNNNNNTGC	8 cut(s)	125, 159, 1544, 1578, 1774, 1808, 2080, 2114
BciT130I	CCWGG	1 cut(s)	879
BciVI	GTATCC	1 cut(s)	583
BclI	TGATCA	1 cut(s)	1798
BcoDI	GTCTC	6 cut(s)	20, 382, 497, 545, 1194, 1875
BfaI	CTAG	4 cut(s)	219, 531, 657, 1269
BfmI	CTRYAG	3 cut(s)	1104, 1591, 1845
BfuAI	ACCTGC	2 cut(s)	1097, 1160
BfuI	GTATCC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	3 cut(s)	72, 105, 1032
BlnI	CCTAGG	1 cut(s)	530
BlpI	GCTNAGC	1 cut(s)	2178
BlsI	GCNGC	3 cut(s)	73, 106, 1033
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	2 cut(s)	775, 1109
BmgT120I	GGNCC	2 cut(s)	775, 1109
BmiI	GGNNCC	3 cut(s)	625, 822, 1051
BmrFI	CCNGG	1 cut(s)	879
BmrI	ACTGGG	2 cut(s)	603, 660
BmsI	GCATC	5 cut(s)	58, 205, 677, 1060, 2144
BmuI	ACTGGG	2 cut(s)	603, 660
BpiI	GAAGAC	2 cut(s)	342, 1608
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	1314
Bpu10I	CCTNAGC	2 cut(s)	159, 1632
Bpu1102I	GCTNAGC	1 cut(s)	2178
Bsa29I	ATCGAT	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	1875
BsaJI	CCNNGG	7 cut(s)	530, 628, 826, 999, 1112, 1351, 1381
BsaWI	WCCGGW	2 cut(s)	403, 499
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 370, 511, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 651, 1027, 1199
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	6 cut(s)	598, 655, 960, 1331, 1488, 2020
Bse3DI	GCAATG	3 cut(s)	276, 866, 1530
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	879
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	7 cut(s)	530, 628, 826, 999, 1112, 1351, 1381
BseGI	GGATG	6 cut(s)	73, 208, 224, 541, 1906, 1987
BseLI	CCNNNNNNNGG	4 cut(s)	130, 651, 1027, 1199
BseMI	GCAATG	3 cut(s)	276, 866, 1530
BseMII	CTCAG	5 cut(s)	150, 1623, 1675, 2027, 2169
BseNI	ACTGG	6 cut(s)	598, 655, 960, 1331, 1488, 2020
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	2 cut(s)	138, 538
BseXI	GCAGC	2 cut(s)	116, 1018
BseYI	CCCAGC	1 cut(s)	2040
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	164, 1131
BshTI	ACCGGT	1 cut(s)	403
BshVI	ATCGAT	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	404, 500
BslFI	GGGAC	2 cut(s)	721, 1639
BslI	CCNNNNNNNGG	4 cut(s)	130, 651, 1027, 1199
BsmAI	GTCTC	6 cut(s)	20, 382, 497, 545, 1194, 1875
BsmFI	GGGAC	2 cut(s)	721, 1639
BsmI	GAATGC	4 cut(s)	55, 1212, 1839, 1841
BsnI	GGCC	2 cut(s)	164, 1131
Bso31I	GGTCTC	1 cut(s)	1875
Bsp1286I	GDGCHC	3 cut(s)	138, 538, 628
Bsp13I	TCCGGA	1 cut(s)	499
Bsp1407I	TGTACA	2 cut(s)	418, 2110
Bsp1720I	GCTNAGC	1 cut(s)	2178
Bsp19I	CCATGG	3 cut(s)	826, 999, 1351
BspACI	CCGC	3 cut(s)	71, 275, 2182
BspANI	GGCC	2 cut(s)	164, 1131
BspCNI	CTCAG	5 cut(s)	151, 1624, 1674, 2026, 2170
BspDI	ATCGAT	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	625, 822, 1051
BspMAI	CTGCAG	2 cut(s)	1108, 1595
BspMI	ACCTGC	2 cut(s)	1097, 1160
BspPI	GGATC	8 cut(s)	91, 330, 619, 815, 828, 1210, 1557, 1705
BspTNI	GGTCTC	1 cut(s)	1875
BsrBI	CCGCTC	1 cut(s)	2182
BsrDI	GCAATG	3 cut(s)	276, 866, 1530
BsrFI	RCCGGY	1 cut(s)	403
BsrGI	TGTACA	2 cut(s)	418, 2110
BsrI	ACTGG	6 cut(s)	598, 655, 960, 1331, 1488, 2020
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	7 cut(s)	530, 628, 826, 999, 1112, 1351, 1381
BssT1I	CCWWGG	6 cut(s)	530, 628, 826, 999, 1351, 1381
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	1 cut(s)	2214
Bst6I	CTCTTC	2 cut(s)	529, 850
BstAUI	TGTACA	2 cut(s)	418, 2110
BstC8I	GCNNGC	4 cut(s)	234, 301, 1133, 1650
BstDEI	CTNAG	5 cut(s)	159, 1632, 1661, 2013, 2178
BstDSI	CCRYGG	3 cut(s)	826, 999, 1351
BstEII	GGTNACC	1 cut(s)	1172
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	6 cut(s)	73, 208, 224, 541, 1906, 1987
BstHHI	GCGC	1 cut(s)	1530
BstMAI	GTCTC	6 cut(s)	20, 382, 497, 545, 1194, 1875
BstMWI	GCNNNNNNNGC	3 cut(s)	868, 908, 1278
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	2 cut(s)	1781, 2048
BstPI	GGTNACC	1 cut(s)	1172
BstSCI	CCNGG	1 cut(s)	877
BstSFI	CTRYAG	3 cut(s)	1104, 1591, 1845
BstSLI	GKGCMC	2 cut(s)	138, 538
BstV1I	GCAGC	2 cut(s)	116, 1018
BstV2I	GAAGAC	2 cut(s)	342, 1608
BstX2I	RGATCY	4 cut(s)	83, 637, 820, 1202
BstXI	CCANNNNNNTGG	1 cut(s)	1046
BstYI	RGATCY	4 cut(s)	83, 637, 820, 1202
Bsu15I	ATCGAT	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	164, 1131
BsuTUI	ATCGAT	1 cut(s)	62
BtgI	CCRYGG	3 cut(s)	826, 999, 1351
BtsCI	GGATG	6 cut(s)	73, 208, 224, 541, 1906, 1987
BtsI	GCAGTG	2 cut(s)	1600, 2273
BtsIMutI	CAGTG	6 cut(s)	89, 1549, 1600, 1669, 1976, 2273
BveI	ACCTGC	2 cut(s)	1097, 1160
Cac8I	GCNNGC	4 cut(s)	234, 301, 1133, 1650
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	1530
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	775, 1109
ClaI	ATCGAT	1 cut(s)	62
Csp6I	GTAC	5 cut(s)	99, 419, 857, 1036, 2111
CspAI	ACCGGT	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	1228, 1263
CviQI	GTAC	5 cut(s)	99, 419, 857, 1036, 2111
DdeI	CTNAG	5 cut(s)	159, 1632, 1661, 2013, 2178
Eam1104I	CTCTTC	2 cut(s)	529, 850
EarI	CTCTTC	2 cut(s)	529, 850
Eco130I	CCWWGG	6 cut(s)	530, 628, 826, 999, 1351, 1381
Eco24I	GRGCYC	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	1875
Eco47I	GGWCC	2 cut(s)	775, 1109
Eco57I	CTGAAG	3 cut(s)	222, 746, 909
Eco91I	GGTNACC	1 cut(s)	1172
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO65I	GGTNACC	1 cut(s)	1172
EcoRI	GAATTC	1 cut(s)	1538
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	6 cut(s)	530, 628, 826, 999, 1351, 1381
EcoT22I	ATGCAT	2 cut(s)	1841, 2137
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	6 cut(s)	530, 628, 826, 999, 1351, 1381
FaqI	GGGAC	2 cut(s)	721, 1639
FauI	CCCGC	1 cut(s)	2175
FauNDI	CATATG	3 cut(s)	79, 1165, 1912
FbaI	TGATCA	1 cut(s)	1798
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	3 cut(s)	72, 105, 1032
FokI	GGATG	6 cut(s)	80, 211, 215, 528, 1893, 1994
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	3 cut(s)	72, 105, 1032
FspBI	CTAG	4 cut(s)	219, 531, 657, 1269
GlaI	GCGC	1 cut(s)	1529
GluI	GCNGC	3 cut(s)	72, 105, 1032
GsaI	CCCAGC	1 cut(s)	2044
GsuI	CTGGAG	1 cut(s)	1314
HaeIII	GGCC	2 cut(s)	164, 1131
HapII	CCGG	2 cut(s)	404, 500
HhaI	GCGC	1 cut(s)	1530
Hin6I	GCGC	1 cut(s)	1528
HinP1I	GCGC	1 cut(s)	1528
HincII	GTYRAC	1 cut(s)	1741
HindII	GTYRAC	1 cut(s)	1741
HindIII	AAGCTT	4 cut(s)	234, 1087, 1432, 1580
HpaII	CCGG	2 cut(s)	404, 500
Hpy166II	GTNNAC	4 cut(s)	735, 1403, 1667, 1741
Hpy188I	TCNGA	7 cut(s)	147, 241, 1113, 1516, 1880, 1954, 2016
Hpy8I	GTNNAC	4 cut(s)	735, 1403, 1667, 1741
HpyAV	CCTTC	2 cut(s)	1275, 1711
HpyCH4III	ACNGT	1 cut(s)	2214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	868, 908, 1278
HpyF3I	CTNAG	5 cut(s)	159, 1632, 1661, 2013, 2178
HspAI	GCGC	1 cut(s)	1528
Kpn2I	TCCGGA	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	1798
LmnI	GCTCC	4 cut(s)	623, 1645, 1942, 2185
Lsp1109I	GCAGC	2 cut(s)	116, 1018
LweI	GCATC	5 cut(s)	58, 205, 677, 1060, 2144
MaeI	CTAG	4 cut(s)	219, 531, 657, 1269
MaeIII	GTNAC	4 cut(s)	1156, 1172, 1780, 2035
MbiI	CCGCTC	1 cut(s)	2182
MfeI	CAATTG	2 cut(s)	615, 2114
MflI	RGATCY	4 cut(s)	83, 637, 820, 1202
MhlI	GDGCHC	3 cut(s)	138, 538, 628
MlyI	GAGTC	6 cut(s)	22, 1157, 1445, 1570, 1621, 2128
MmeI	TCCRAC	2 cut(s)	1217, 2196
Mph1103I	ATGCAT	2 cut(s)	1841, 2137
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	2 cut(s)	181, 1839
MseI	TTAA	4 cut(s)	678, 1091, 1437, 1682
MspI	CCGG	2 cut(s)	404, 500
MspR9I	CCNGG	1 cut(s)	879
MunI	CAATTG	2 cut(s)	615, 2114
Mva1269I	GAATGC	4 cut(s)	55, 1212, 1839, 1841
MvaI	CCWGG	1 cut(s)	879
MwoI	GCNNNNNNNGC	3 cut(s)	868, 908, 1278
NcoI	CCATGG	3 cut(s)	826, 999, 1351
NdeI	CATATG	3 cut(s)	79, 1165, 1912
NlaIV	GGNNCC	3 cut(s)	625, 822, 1051
NmuCI	GTSAC	2 cut(s)	1172, 2035
NsiI	ATGCAT	2 cut(s)	1841, 2137
NspI	RCATGY	2 cut(s)	1781, 2048
PagI	TCATGA	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	1160
PciI	ACATGT	1 cut(s)	1777
PctI	GAATGC	4 cut(s)	55, 1212, 1839, 1841
PdmI	GAANNNNTTC	2 cut(s)	181, 1839
PfeI	GAWTC	7 cut(s)	575, 799, 882, 1236, 1367, 1860, 1994
PflMI	CCANNNNNTGG	1 cut(s)	1199
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	73, 106, 1033
PleI	GAGTC	6 cut(s)	21, 1156, 1445, 1569, 1621, 2127
PpsI	GAGTC	6 cut(s)	21, 1156, 1445, 1569, 1621, 2127
PscI	ACATGT	1 cut(s)	1777
Psp6I	CCWGG	1 cut(s)	877
PspEI	GGTNACC	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	2040
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	3 cut(s)	625, 822, 1051
PspPI	GGNCC	2 cut(s)	775, 1109
PstI	CTGCAG	2 cut(s)	1108, 1595
PsuI	RGATCY	4 cut(s)	83, 637, 820, 1202
RsaI	GTAC	5 cut(s)	100, 420, 858, 1037, 2112
RsaNI	GTAC	5 cut(s)	99, 419, 857, 1036, 2111
SaqAI	TTAA	4 cut(s)	678, 1091, 1437, 1682
SatI	GCNGC	3 cut(s)	72, 105, 1032
Sau96I	GGNCC	2 cut(s)	775, 1109
SchI	GAGTC	6 cut(s)	22, 1157, 1445, 1570, 1621, 2128
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	3 cut(s)	138, 538, 628
SfaNI	GCATC	5 cut(s)	58, 205, 677, 1060, 2144
SfcI	CTRYAG	3 cut(s)	1104, 1591, 1845
SinI	GGWCC	2 cut(s)	775, 1109
SsiI	CCGC	3 cut(s)	71, 275, 2182
SspI	AATATT	2 cut(s)	583, 676
SspMI	CTAG	4 cut(s)	219, 531, 657, 1269
StyD4I	CCNGG	1 cut(s)	877
StyI	CCWWGG	6 cut(s)	530, 628, 826, 999, 1351, 1381
TaaI	ACNGT	1 cut(s)	2214
TaqI	TCGA	7 cut(s)	62, 175, 489, 1099, 1370, 1564, 1599
TatI	WGTACW	2 cut(s)	418, 2110
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	7 cut(s)	575, 799, 882, 1236, 1367, 1860, 1994
Tru1I	TTAA	4 cut(s)	678, 1091, 1437, 1682
Tru9I	TTAA	4 cut(s)	678, 1091, 1437, 1682
TscAI	CASTG	6 cut(s)	96, 1549, 1600, 1669, 1976, 2280
TseFI	GTSAC	2 cut(s)	1172, 2035
TseI	GCWGC	2 cut(s)	104, 1031
Tsp45I	GTSAC	2 cut(s)	1172, 2035
TspDTI	ATGAA	9 cut(s)	48, 213, 414, 582, 588, 812, 1380, 1852, 2085
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	6 cut(s)	96, 1549, 1600, 1669, 1976, 2280
Van91I	CCANNNNNTGG	1 cut(s)	1199
VpaK11BI	GGWCC	2 cut(s)	775, 1109
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	4 cut(s)	475, 1181, 1502, 1538
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	2 cut(s)	1781, 2048
XmaJI	CCTAGG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	734
XmnI	GAANNNNTTC	2 cut(s)	181, 1839
XspI	CTAG	4 cut(s)	219, 531, 657, 1269
Zsp2I	ATGCAT	2 cut(s)	1841, 2137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.