Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Forward (+)

21273960 .. 21276544

Gene Structure 2585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGATTTTGCAGTCCGTTTGCATTTTGGCTCACGATAGATCAGTATGGAAATTATGTCGTGCAGCATGTGCTGGAACATGGAAAGCCACATGAACGGTCATGTATAATTAAGGAACTAACCGGGCAGATTGTTCAAATGAGCCAGCAAAAGTTTGCGTCAAATGTCATAGAAAAGTGTTTAAGTTTTGGAACTCTTGCTGAACGGCAGGCCCTTGTAACTGAGATGCTTGGTACCACTGATGAAAATGAGCCCCTTCAGGCGATGATGAAGGATCAGTTCGCAAACTATGTTGTACAGAAAGTGCTGGAAACTTGTGACGATCAGCAACTTGAACTAATCCTTAACCGAATTAAGGTTCATCTGAATGCTCTGAAGAAGTATACTTATGGGAAGCATATAGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGGGAGAGGAGGATTAGCATTCTGGCTCCCCAGGCATCTGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

7.7

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	242, 395
AcvI	CACGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	235, 297
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	137, 335
AjnI	CCWGG	1 cut(s)	462
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	64, 428
Asp718I	GGTACC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	76, 415
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	124
BisI	GCNGC	2 cut(s)	65, 429
BlsI	GCNGC	2 cut(s)	66, 430
Bme1390I	CCNGG	2 cut(s)	124, 464
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	235, 459
BmrFI	CCNGG	2 cut(s)	124, 464
BmsI	GCATC	2 cut(s)	216, 476
BpuMI	CCSGG	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	76, 415
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmI	GAATGC	2 cut(s)	373, 450
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	40, 274, 322
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	235, 459
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	3 cut(s)	40, 274, 322
BssNAI	GTATAC	1 cut(s)	384
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	295
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	146, 210
BstDEI	CTNAG	2 cut(s)	222, 477
BstKTI	GATC	3 cut(s)	43, 277, 325
BstMBI	GATC	3 cut(s)	40, 274, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 464
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	122, 462
BstV1I	GCAGC	2 cut(s)	76, 415
BstZ17I	GTATAC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	212
BtgZI	GCGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	146, 210
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	234, 296
CviAII	CATG	4 cut(s)	68, 80, 92, 102
CviJI	RGCY	6 cut(s)	31, 88, 144, 212, 253, 458
CviKI_1	RGCY	6 cut(s)	31, 88, 144, 212, 253, 458
CviQI	GTAC	2 cut(s)	234, 296
DdeI	CTNAG	2 cut(s)	222, 477
DpnI	GATC	3 cut(s)	42, 276, 324
DpnII	GATC	3 cut(s)	40, 274, 322
Eco24I	GRGCYC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	242, 395
Eco72I	CACGTG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	4 cut(s)	71, 83, 95, 105
FatI	CATG	4 cut(s)	67, 79, 91, 101
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	2 cut(s)	65, 429
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	65, 429
GluI	GCNGC	2 cut(s)	65, 429
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	71, 83, 95, 105
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	2 cut(s)	366, 375
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	2 cut(s)	265, 266
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	12, 23, 64, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 464
HpyF3I	CTNAG	2 cut(s)	222, 477
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	71, 83, 95, 105
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	40, 274, 322
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	2 cut(s)	76, 415
LweI	GCATC	2 cut(s)	216, 476
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	217, 317
MalI	GATC	3 cut(s)	42, 276, 324
MboI	GATC	3 cut(s)	40, 274, 322
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	52, 108, 351
MnlI	CCTC	2 cut(s)	432, 435
MseI	TTAA	4 cut(s)	111, 182, 345, 354
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	124, 464
Mva1269I	GAATGC	2 cut(s)	373, 450
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	70, 464
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	3 cut(s)	40, 274, 322
NlaIII	CATG	4 cut(s)	71, 83, 95, 105
NlaIV	GGNNCC	2 cut(s)	235, 459
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	71
PctI	GAATGC	2 cut(s)	373, 450
PkrI	GCNGC	2 cut(s)	66, 430
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	462
PspCI	CACGTG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	235, 459
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	235, 297
RsaNI	GTAC	2 cut(s)	234, 296
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	111, 182, 345, 354
SatI	GCNGC	2 cut(s)	65, 429
Sau3AI	GATC	3 cut(s)	40, 274, 322
Sau96I	GGNCC	1 cut(s)	211
ScrFI	CCNGG	2 cut(s)	124, 464
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	2 cut(s)	360, 412
SfaNI	GCATC	2 cut(s)	216, 476
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	52, 108, 351
StyD4I	CCNGG	2 cut(s)	122, 462
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	412
TasI	AATT	3 cut(s)	52, 108, 351
TatI	WGTACW	1 cut(s)	295
Tru1I	TTAA	4 cut(s)	111, 182, 345, 354
Tru9I	TTAA	4 cut(s)	111, 182, 345, 354
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	64, 428
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	108, 258, 284, 350
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.