Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Reverse (-)

52678047 .. 52689195

Gene Structure 11149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0410700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3462 bp

ATGGCGTCAACGAGCGAATTGACTCAGCACCTTGAGTGTTACGTCGACACAGCTCGCCCTCCCGCCGACCAGGCTGCAAGCTTGAATTTCATCACTTCTCTTGTGAACAAGGACTTATTGACTATTGAAGTGCTGGTGAAAGAGATGAGGATGTATCTGACCATCACGGATAATGTCATTCGTGCTCGTGGTATACTTCTTTTGGCAGAAGTTCTTACAGGTCTTTCATCAACGCCACTAGATAATGCAACTATTCATAGCTTGATAGGATTCTTCACAGACAGGCTGTCAGATTGGAGAGCTTTACGTGGTGCACTTGTTGGTTGCTTAGCACTGCTGAGGAGACAAGCTAATGCTGGAACTGTCTCTGCCAGTGATGCAAAAGTTGTTGCTCTGTCTTACAGAGAGAACCTACCGGTGCAATCTTTAGCTCAACAGGACAGAAAGCTTTGCTTTGAGCTTTTGGAATGCCTTTTACAACGCTATCCCAACGAGGTTGCTTCACTGGGTGAAGACCTTTTCTATGCGATCTCTGAAGCCATTGATGGAGAAAAGGATCCTCATTGCTTAATATTAGCATTTCATATTGTTGAGGTTCTGGTCCAAATATTTCCAGACCCATCGGGGCCACTTGCAAGTTTCTGTGGAGATCTATTTGAATTCTTGGGTTGCTACTTTCCCATTCATTTTACTCATCTGAAAGATGAGGACGCTGATGTGAGAAGGGATGACCTCTCGAAGGCACTAATGTCAGCATTCTCGTCCACAGCTTTATTTGAGCCATTTGTTATTCCGTTGCTTCTTGAGAAACTTTCTTCTTCTCTGCCATTAGCAAAGGTTGATTCTTTGAAGTATCTTAACTACTGTGCATCTAGATATGGAGCTGAAAGAATGGCAAAACATGCTGAAACTATCTGGATTTCTATAAAACATGCAATAAGTAATTCATTGGAAGTGCCTGCTAAATCCTTTACTTCAGAACCACTACTTGGTCTTGGCTTTCAAGAGAATGAAATTGCAACAGAAGCGCTTATTCTTCTACAAAAGGTCACCATGCAAAATGAAGCTTTGTTTCTAAATTTGGTTGTTCGGGATGAAGATATAAACAATGTTTTCAATTCCATAGCTAGTCATGAAAGTTACACTAATATTCCCTTGCAAGGCAGGCAGAGTTTACATGCAGTTGGTCGCATCCTTTGTATCATAACCAAGACTTCCATGGCTTCCTGTAATAGGGTATTCGAAAGTTTCTTCCCTTGCCTAATGAACACTCTGGAGATTTCAATGGGGAATTCATCTAAGGATTTTACTCTTAATGAGAATTCTTTTTCCTCTAAAAGATTTAATTTTGGAGCTCTTTATCTCTGCGTGGAATTCATTGCTGCATGCAGAGATTTAATCATGAGAACCAATGAACATGCTGAGAAGTCTGGTACTGCAGATGAGACATGTTGCTACATGCTTCAAAGCTCTGCGCCTACACTAATCACTACCTTTTGTTCTACCTTAGCGAAAAGTTCTAATGATGTTGTTGATGATGCAGATATTTATTTCAAAGTGAAGGGTTTACAAATGTTGGCTACATTCCCTGGATATTTCTTACAAACACCAACAGCTATGTTTGAGAATGTTCTGAAGACTCTCATGTCAATCATCTTGGTGGATTTTGACAAGTCGTTGTTATGGAAGCTAGCATTGAAGGCTTTAGTGCACATTGGCTCATTTGTGGATATGGATCATGAGTCAGAGAAGGCACAAATCTATATAAGTTTTGTTGTTGAAAAGACTATTTCATTGGTGTCTCAAGACGATTTTAATGTGCCTTTCCCTCTAAAACTGGAAGCAGTATCTGAGATTGGTGCAAGTAGGCCAAATCATATGCTAAAAATTGTCCAAGGGCTGGAAGATGCAATAGTTGCCAATTTATCCAAAATTTATGTCCATGGAGATTTGAAGTCAGCTGAAAAAACAATTCAACTTTTGGAATGCTACTCCAATAAGATTATTTCATGGATCGATGAAACTGGAGGCCTTGAGGAAGTTCTGTATCGATTCGTCATTAGTATGTGGAATTGCGTTGATAGGTGCAAAGATTCTAGCAATCAAGTCCAAGACAAAGGACTTCTTGATGCAACAATGATGGCAATGAAGCTTGCTGTTGGGAGTTGTTCAGAGGAAAGTCAAAACATTATAATCCAAAAGGCCTATGGAGCTCTTTCATCGGGCATATCTATTCCTTTTAAGGACTCCATGGATGACAGTTCTTCAGTTAAGCTTGAAAACTTGCACCTTTCTGAACAGCTAGACAAGTTTTCACTTAGAGATGAATGGATTCTTTCACTATTTGCATCAGTAATCATAGCGATGCGTCCAAGAACTCATATTGCAAATGCAAAAGGAATTTTGCATTTATTTATGACCGCCCTTGTCAAAGGTTGTACTCCAGCAGCTCAGGCATTGGGTTCTGTGATTAACAAATTTGGTACATTTGGTACACCATCCAATGAAGTAGCAACTTCAACAGGCTGTACGTTGGAAGAAGCAATGGAAATTATTTTTAGGTCAAAACTATGGAATATCAGCGAGGATGGAGTTTTAAGGGGATCTGGAACAAGCCACAGCAGTAAAGTGGGGCTCACTGAATTATGCCTTGGGTTTTCGAGCAATAAATTGCTTCAAGTCCATGCCATCACTGGACTAGCATGGATAGGGAAAGGTTTGCTTCTAATTGGTCATGAACAAGTAAAAGATGTTACTAAAATCATCTTGGAGTGCCTATTGGCAGATGACAGAATAGGTGACTCTGAGTCGAGGCAAGGTCTGCTAGAAACCAGTCGCAAGCTGCCTTCTGTGATGAGAAGTGCAGCAGATGCATTTCATATTCTTATGAGTGATTCTGATGTTTGTTTGAACCGTAAGTTTCATGCAAAAATACGACCACTCTACAAGCAGCGGTTTTTCTCTACAGTGATGCCAATTTTGCATTCCTTGATAGTGAAATCTGATTCATCATTATCTAGATCTATGCTGTTTCGGGCATCAGCGCACCTCATCTCCAATGCTCCATTAATTGTTATCTTGAGTGACGCCAAGAAGCTCATGAAAGTACTGTTGGATGGATTGTCCATACTAAGTGAAGATATTCTGGATAAAGATAAGCTTTACAGTCTTTTGCTAGTTCTATCTGGGATATTGACAGATAAATGCGGAGAAGAAGCTGTCCTAGAGAATGCACATATATTAATTGATTGTCTCACCAGACTAATTGCCTACCCTCATATGATGCTTGTTCGAGAGACTGCAATTCAATGCCTTCTTGCCATGTCTGAGCTGCCCCGTCCTAGAATCTTTCCCCTGAAAACACAGGTACTGCAAGCAATATTCAAGGCTCTTGATGATCCAAAAAGAGCTGTTCGTCAGGAAGCTGTTAGATGTCTACATGCATGGACATCGATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

1153

Amino Acids

127.75

Weight (kDa)

5.71

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMS19_N	PF14500	46 - 314	1.1e-76	Dos2-interacting transcription regulator of RNA-Pol-II
MMS19_C	PF12460	886 - 1108	7.5e-25	RNAPII transcription regulator C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2192
AasI	GACNNNNNNGTC	1 cut(s)	1645
AccB7I	CCANNNNNTGG	2 cut(s)	989, 1900
AccI	GTMKAC	3 cut(s)	45, 193, 3436
AciI	CCGC	4 cut(s)	63, 2421, 2953, 3207
AclWI	GGATC	6 cut(s)	551, 564, 1743, 2021, 2611, 3392
AcsI	RAATTY	9 cut(s)	85, 659, 1078, 1291, 1321, 1373, 1932, 2400, 2477
AcuI	CTGAAG	4 cut(s)	555, 960, 1655, 2250
AcyI	GRCGYC	2 cut(s)	5, 3087
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	7 cut(s)	1435, 2440, 2485, 2494, 2530, 3108, 3369
AfeI	AGCGCT	1 cut(s)	1029
AfiI	CCNNNNNNNGG	5 cut(s)	739, 989, 1160, 1233, 1900
AflIII	ACRYGT	1 cut(s)	1448
AgeI	ACCGGT	1 cut(s)	415
AhdI	GACNNNNNGTC	2 cut(s)	286, 2806
AjnI	CCWGG	2 cut(s)	69, 1588
AjuI	GAANNNNNNNTTGG	8 cut(s)	972, 1004, 2634, 2666, 2968, 3000, 3095, 3127
Alw21I	GWGCWC	5 cut(s)	187, 316, 1357, 1713, 2215
Alw26I	GTCTC	6 cut(s)	337, 370, 1439, 1806, 3257, 3290
Alw44I	GTGCAC	2 cut(s)	312, 1709
AlwI	GGATC	6 cut(s)	551, 564, 1743, 2021, 2611, 3392
AlwNI	CAGNNNCTG	2 cut(s)	1850, 3370
Aor51HI	AGCGCT	1 cut(s)	1029
AoxI	GGCC	4 cut(s)	626, 1868, 2029, 2202
ApaLI	GTGCAC	2 cut(s)	312, 1709
ApeKI	GCWGC	7 cut(s)	74, 1382, 2447, 2842, 2864, 2950, 3331
ApoI	RAATTY	9 cut(s)	85, 659, 1078, 1291, 1321, 1373, 1932, 2400, 2477
ArsI	GACNNNNNNTTYG	2 cut(s)	1923, 1955
AseI	ATTAAT	2 cut(s)	3068, 3242
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	2 cut(s)	2331, 3141
AspLEI	GCGC	3 cut(s)	1030, 1477, 3046
AspS9I	GGNCC	2 cut(s)	601, 626
AsuHPI	GGTGA	5 cut(s)	148, 521, 1042, 2810, 3247
AsuII	TTCGAA	1 cut(s)	1242
AsuNHI	GCTAGC	1 cut(s)	1690
AvaII	GGWCC	1 cut(s)	601
BaeGI	GKGCMC	2 cut(s)	316, 1713
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	3 cut(s)	1357, 2215, 2637
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	519, 1643
Bbv12I	GWGCWC	5 cut(s)	187, 316, 1357, 1713, 2215
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	7 cut(s)	61, 1369, 2459, 2829, 2876, 2962, 3318
BccI	CCATC	8 cut(s)	170, 539, 628, 2134, 2506, 2582, 2696, 3110
BcgI	CGANNNNNNTGC	3 cut(s)	56, 90, 3432
BciT130I	CCWGG	2 cut(s)	71, 1590
BcoDI	GTCTC	6 cut(s)	337, 370, 1439, 1806, 3257, 3290
BfmI	CTRYAG	2 cut(s)	1437, 2964
BfoI	RGCGCY	1 cut(s)	1031
BglI	GCCNNNNNGGC	1 cut(s)	71
BglII	AGATCT	2 cut(s)	649, 3020
BisI	GCNGC	7 cut(s)	75, 1383, 2448, 2843, 2865, 2951, 3332
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	7 cut(s)	76, 1384, 2449, 2844, 2866, 2952, 3333
BmcAI	AGTACT	1 cut(s)	3108
Bme1390I	CCNGG	2 cut(s)	71, 1590
Bme18I	GGWCC	1 cut(s)	601
BmeRI	GACNNNNNGTC	2 cut(s)	286, 2806
BmgT120I	GGNCC	2 cut(s)	601, 626
BmiI	GGNNCC	2 cut(s)	558, 627
BmrFI	CCNGG	2 cut(s)	71, 1590
BmrI	ACTGGG	1 cut(s)	515
BmtI	GCTAGC	1 cut(s)	1694
BmuI	ACTGGG	1 cut(s)	515
BpiI	GAAGAC	2 cut(s)	519, 1643
BpmI	CTGGAG	3 cut(s)	1295, 2046, 2427
Bpu10I	CCTNAGC	3 cut(s)	338, 1507, 2451
Bpu1102I	GCTNAGC	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	1242
BpuEI	CTTGAG	5 cut(s)	53, 824, 1788, 2054, 3100
Bsa29I	ATCGAT	3 cut(s)	2016, 2050, 3452
BsaAI	YACGTR	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	1734
BsaHI	GRCGYC	2 cut(s)	5, 3087
BsaJI	CCNNGG	6 cut(s)	1218, 1588, 1894, 1942, 2250, 2650
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	3038, 3068
Bsc4I	CCNNNNNNNGG	5 cut(s)	739, 989, 1160, 1233, 1900
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	6 cut(s)	372, 510, 1842, 2029, 2698, 2832
Bse3DI	GCAATG	4 cut(s)	562, 1377, 2151, 2550
Bse8I	GATNNNNATC	1 cut(s)	1734
BseBI	CCWGG	2 cut(s)	71, 1590
BseCI	ATCGAT	3 cut(s)	2016, 2050, 3452
BseDI	CCNNGG	6 cut(s)	1218, 1588, 1894, 1942, 2250, 2650
BseGI	GGATG	8 cut(s)	156, 733, 1099, 1191, 2260, 2498, 2593, 3121
BseJI	GATNNNNATC	1 cut(s)	1734
BseLI	CCNNNNNNNGG	5 cut(s)	739, 989, 1160, 1233, 1900
BseMI	GCAATG	4 cut(s)	562, 1377, 2151, 2550
BseMII	CTCAG	7 cut(s)	38, 329, 1413, 1842, 2465, 2796, 3318
BseNI	ACTGG	6 cut(s)	372, 510, 1842, 2029, 2698, 2832
BseRI	GAGGAG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	316, 1713
BseXI	GCAGC	7 cut(s)	61, 1369, 2459, 2829, 2876, 2962, 3318
BsgI	GTGCAG	1 cut(s)	2883
BshFI	GGCC	4 cut(s)	628, 1870, 2031, 2204
BshTI	ACCGGT	1 cut(s)	415
BshVI	ATCGAT	3 cut(s)	2016, 2050, 3452
BsiHKAI	GWGCWC	5 cut(s)	187, 316, 1357, 1713, 2215
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	5 cut(s)	739, 989, 1160, 1233, 1900
BsmAI	GTCTC	6 cut(s)	337, 370, 1439, 1806, 3257, 3290
BsmI	GAATGC	5 cut(s)	473, 755, 1991, 2983, 3235
BsnI	GGCC	4 cut(s)	628, 1870, 2031, 2204
Bsp119I	TTCGAA	1 cut(s)	1242
Bsp1286I	GDGCHC	6 cut(s)	187, 316, 1357, 1713, 2215, 2637
Bsp143I	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
Bsp1720I	GCTNAGC	1 cut(s)	328
Bsp19I	CCATGG	3 cut(s)	1218, 1942, 2250
BspACI	CCGC	4 cut(s)	63, 2421, 2953, 3207
BspANI	GGCC	4 cut(s)	628, 1870, 2031, 2204
BspCNI	CTCAG	7 cut(s)	37, 330, 1414, 1843, 2464, 2797, 3319
BspDI	ATCGAT	3 cut(s)	2016, 2050, 3452
BspHI	TCATGA	5 cut(s)	1132, 1401, 1738, 2734, 3099
BspLI	GGNNCC	2 cut(s)	558, 627
BspMAI	CTGCAG	1 cut(s)	1441
BspOI	GCTAGC	1 cut(s)	1694
BspPI	GGATC	6 cut(s)	551, 564, 1743, 2021, 2611, 3392
BspT104I	TTCGAA	1 cut(s)	1242
BsrDI	GCAATG	4 cut(s)	562, 1377, 2151, 2550
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	6 cut(s)	372, 510, 1842, 2029, 2698, 2832
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	6 cut(s)	1218, 1588, 1894, 1942, 2250, 2650
BssMI	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
BssNAI	GTATAC	1 cut(s)	194
BssNI	GRCGYC	2 cut(s)	5, 3087
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	5 cut(s)	1218, 1894, 1942, 2250, 2650
Bst1107I	GTATAC	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	71, 1590
Bst4CI	ACNGT	7 cut(s)	364, 866, 2261, 2915, 2968, 3111, 3167
BstACI	GRCGYC	2 cut(s)	5, 3087
BstAPI	GCANNNNNTGC	4 cut(s)	902, 1916, 2821, 2870
BstBAI	YACGTR	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	1242
BstC8I	GCNNGC	9 cut(s)	55, 79, 960, 1166, 1387, 1692, 2154, 2840, 3375
BstDSI	CCRYGG	3 cut(s)	1218, 1942, 2250
BstEII	GGTNACC	1 cut(s)	1048
BstENI	CCTNNNNNAGG	2 cut(s)	737, 1231
BstF5I	GGATG	8 cut(s)	156, 733, 1099, 1191, 2260, 2498, 2593, 3121
BstH2I	RGCGCY	1 cut(s)	1031
BstHHI	GCGC	3 cut(s)	1030, 1477, 3046
BstKTI	GATC	8 cut(s)	531, 559, 652, 1738, 2016, 2606, 3023, 3400
BstMAI	GTCTC	6 cut(s)	337, 370, 1439, 1806, 3257, 3290
BstMBI	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
BstNI	CCWGG	2 cut(s)	71, 1590
BstNSI	RCATGY	8 cut(s)	905, 935, 1181, 1389, 1421, 1452, 1462, 3443
BstPI	GGTNACC	1 cut(s)	1048
BstSCI	CCNGG	2 cut(s)	69, 1588
BstSFI	CTRYAG	2 cut(s)	1437, 2964
BstSLI	GKGCMC	2 cut(s)	316, 1713
BstV1I	GCAGC	7 cut(s)	61, 1369, 2459, 2829, 2876, 2962, 3318
BstV2I	GAAGAC	2 cut(s)	519, 1643
BstX2I	RGATCY	4 cut(s)	556, 649, 2603, 3020
BstYI	RGATCY	4 cut(s)	556, 649, 2603, 3020
BstZ17I	GTATAC	1 cut(s)	194
Bsu15I	ATCGAT	3 cut(s)	2016, 2050, 3452
BsuRI	GGCC	4 cut(s)	628, 1870, 2031, 2204
BsuTUI	ATCGAT	3 cut(s)	2016, 2050, 3452
BtgI	CCRYGG	3 cut(s)	1218, 1942, 2250
BtgZI	GCGATG	1 cut(s)	2378
BtsCI	GGATG	8 cut(s)	156, 733, 1099, 1191, 2260, 2498, 2593, 3121
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	6 cut(s)	332, 379, 503, 2637, 2691, 2973
Cac8I	GCNNGC	9 cut(s)	55, 79, 960, 1166, 1387, 1692, 2154, 2840, 3375
CaiI	CAGNNNCTG	2 cut(s)	1850, 3370
CciI	TCATGA	5 cut(s)	1132, 1401, 1738, 2734, 3099
CfoI	GCGC	3 cut(s)	1030, 1477, 3046
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	601, 626
ClaI	ATCGAT	3 cut(s)	2016, 2050, 3452
CseI	GACGC	3 cut(s)	719, 2357, 3095
Csp6I	GTAC	7 cut(s)	1434, 2439, 2484, 2493, 2529, 3107, 3368
CspAI	ACCGGT	1 cut(s)	415
CviQI	GTAC	7 cut(s)	1434, 2439, 2484, 2493, 2529, 3107, 3368
DpnI	GATC	8 cut(s)	530, 558, 651, 1737, 2015, 2605, 3022, 3399
DpnII	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
DraIII	CACNNNGTG	1 cut(s)	509
DrdI	GACNNNNNNGTC	1 cut(s)	1645
DriI	GACNNNNNGTC	2 cut(s)	286, 2806
DseDI	GACNNNNNNGTC	1 cut(s)	1645
Eam1105I	GACNNNNNGTC	2 cut(s)	286, 2806
Ecl136II	GAGCTC	2 cut(s)	1355, 2213
Eco130I	CCWWGG	5 cut(s)	1218, 1894, 1942, 2250, 2650
Eco147I	AGGCCT	2 cut(s)	2031, 2204
Eco24I	GRGCYC	3 cut(s)	1357, 2215, 2637
Eco47I	GGWCC	1 cut(s)	601
Eco47III	AGCGCT	1 cut(s)	1029
Eco53kI	GAGCTC	2 cut(s)	1355, 2213
Eco57I	CTGAAG	4 cut(s)	555, 960, 1655, 2250
Eco91I	GGTNACC	1 cut(s)	1048
EcoICRI	GAGCTC	2 cut(s)	1355, 2213
EcoNI	CCTNNNNNAGG	2 cut(s)	737, 1231
EcoO65I	GGTNACC	1 cut(s)	1048
EcoRI	GAATTC	4 cut(s)	659, 1291, 1321, 1373
EcoRII	CCWGG	2 cut(s)	69, 1588
EcoT14I	CCWWGG	5 cut(s)	1218, 1894, 1942, 2250, 2650
EcoT22I	ATGCAT	2 cut(s)	2875, 3445
EcoT38I	GRGCYC	3 cut(s)	1357, 2215, 2637
ErhI	CCWWGG	5 cut(s)	1218, 1894, 1942, 2250, 2650
FalI	AAGNNNNNCTT	8 cut(s)	437, 469, 2109, 2141, 2706, 2738, 3144, 3176
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	2 cut(s)	1878, 3279
FblI	GTMKAC	3 cut(s)	45, 193, 3436
Fnu4HI	GCNGC	7 cut(s)	75, 1383, 2448, 2843, 2865, 2951, 3332
FokI	GGATG	8 cut(s)	163, 740, 1106, 1178, 2267, 2485, 2600, 3128
FriOI	GRGCYC	3 cut(s)	1357, 2215, 2637
Fsp4HI	GCNGC	7 cut(s)	75, 1383, 2448, 2843, 2865, 2951, 3332
GlaI	GCGC	3 cut(s)	1029, 1476, 3045
GluI	GCNGC	7 cut(s)	75, 1383, 2448, 2843, 2865, 2951, 3332
GsuI	CTGGAG	3 cut(s)	1295, 2046, 2427
HaeII	RGCGCY	1 cut(s)	1031
HaeIII	GGCC	4 cut(s)	628, 1870, 2031, 2204
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	3 cut(s)	719, 2357, 3095
HhaI	GCGC	3 cut(s)	1030, 1477, 3046
Hin1I	GRCGYC	2 cut(s)	5, 3087
Hin6I	GCGC	3 cut(s)	1028, 1475, 3044
HinP1I	GCGC	3 cut(s)	1028, 1475, 3044
HincII	GTYRAC	2 cut(s)	9, 46
HindII	GTYRAC	2 cut(s)	9, 46
HindIII	AAGCTT	6 cut(s)	79, 446, 1065, 2150, 2273, 3158
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	5 cut(s)	148, 521, 1042, 2810, 3247
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	7 cut(s)	717, 733, 1555, 1693, 1744, 2856, 3323
HpyCH4III	ACNGT	7 cut(s)	364, 866, 2261, 2915, 2968, 3111, 3167
HpyCH4IV	ACGT	3 cut(s)	42, 307, 2531
HpySE526I	ACGT	3 cut(s)	42, 307, 2531
Hsp92I	GRCGYC	2 cut(s)	5, 3087
HspAI	GCGC	3 cut(s)	1028, 1475, 3044
Kzo9I	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
LmnI	GCTCC	4 cut(s)	881, 1352, 2210, 3067
Lsp1109I	GCAGC	7 cut(s)	61, 1369, 2459, 2829, 2876, 2962, 3318
MaeII	ACGT	3 cut(s)	42, 307, 2531
MaeIII	GTNAC	6 cut(s)	38, 1048, 1139, 2752, 2798, 3083
MalI	GATC	8 cut(s)	530, 558, 651, 1737, 2015, 2605, 3022, 3399
MboI	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
MflI	RGATCY	4 cut(s)	556, 649, 2603, 3020
MhlI	GDGCHC	6 cut(s)	187, 316, 1357, 1713, 2215, 2637
MlyI	GAGTC	6 cut(s)	16, 1633, 1751, 2240, 2795, 2816
MmeI	TCCRAC	2 cut(s)	2514, 3093
Mph1103I	ATGCAT	2 cut(s)	2875, 3445
MroXI	GAANNNNTTC	2 cut(s)	2331, 3141
MslI	CAYNNNNRTG	3 cut(s)	1658, 2063, 2363
MspA1I	CMGCKG	2 cut(s)	1961, 2953
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	71, 1590
Mva1269I	GAATGC	5 cut(s)	473, 755, 1991, 2983, 3235
MvaI	CCWGG	2 cut(s)	71, 1590
NcoI	CCATGG	3 cut(s)	1218, 1942, 2250
NdeI	CATATG	2 cut(s)	1878, 3279
NdeII	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
NheI	GCTAGC	1 cut(s)	1690
NlaIV	GGNNCC	2 cut(s)	558, 627
NmuCI	GTSAC	3 cut(s)	1048, 2798, 3083
NsiI	ATGCAT	2 cut(s)	2875, 3445
NspI	RCATGY	8 cut(s)	905, 935, 1181, 1389, 1421, 1452, 1462, 3443
NspV	TTCGAA	1 cut(s)	1242
PaeI	GCATGC	1 cut(s)	1389
PagI	TCATGA	5 cut(s)	1132, 1401, 1738, 2734, 3099
PceI	AGGCCT	2 cut(s)	2031, 2204
PciI	ACATGT	1 cut(s)	1448
PctI	GAATGC	5 cut(s)	473, 755, 1991, 2983, 3235
PdmI	GAANNNNTTC	2 cut(s)	2331, 3141
PfeI	GAWTC	8 cut(s)	270, 842, 2052, 2093, 2332, 2894, 3005, 3345
PflMI	CCANNNNNTGG	2 cut(s)	989, 1900
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	7 cut(s)	76, 1384, 2449, 2844, 2866, 2952, 3333
PleI	GAGTC	6 cut(s)	16, 1633, 1750, 2240, 2795, 2815
PpsI	GAGTC	6 cut(s)	16, 1633, 1750, 2240, 2795, 2815
Ppu21I	YACGTR	1 cut(s)	308
PscI	ACATGT	1 cut(s)	1448
PshBI	ATTAAT	2 cut(s)	3068, 3242
PsiI	TTATAA	1 cut(s)	2192
Psp124BI	GAGCTC	2 cut(s)	1357, 2215
Psp6I	CCWGG	2 cut(s)	69, 1588
PspEI	GGTNACC	1 cut(s)	1048
PspGI	CCWGG	2 cut(s)	69, 1588
PspN4I	GGNNCC	2 cut(s)	558, 627
PspPI	GGNCC	2 cut(s)	601, 626
PstI	CTGCAG	1 cut(s)	1441
PstNI	CAGNNNCTG	2 cut(s)	1850, 3370
PsuI	RGATCY	4 cut(s)	556, 649, 2603, 3020
PvuII	CAGCTG	1 cut(s)	1961
RsaI	GTAC	7 cut(s)	1435, 2440, 2485, 2494, 2530, 3108, 3369
RsaNI	GTAC	7 cut(s)	1434, 2439, 2484, 2493, 2529, 3107, 3368
RseI	CAYNNNNRTG	3 cut(s)	1658, 2063, 2363
SacI	GAGCTC	2 cut(s)	1357, 2215
SalI	GTCGAC	1 cut(s)	44
SatI	GCNGC	7 cut(s)	75, 1383, 2448, 2843, 2865, 2951, 3332
Sau3AI	GATC	8 cut(s)	528, 556, 649, 1735, 2013, 2603, 3020, 3397
Sau96I	GGNCC	2 cut(s)	601, 626
ScaI	AGTACT	1 cut(s)	3108
SchI	GAGTC	6 cut(s)	16, 1633, 1751, 2240, 2795, 2816
ScrFI	CCNGG	2 cut(s)	71, 1590
SduI	GDGCHC	6 cut(s)	187, 316, 1357, 1713, 2215, 2637
SfcI	CTRYAG	2 cut(s)	1437, 2964
SfuI	TTCGAA	1 cut(s)	1242
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	3 cut(s)	1658, 2063, 2363
SmlI	CTYRAG	5 cut(s)	32, 803, 1803, 2033, 3079
SmoI	CTYRAG	5 cut(s)	32, 803, 1803, 2033, 3079
SphI	GCATGC	1 cut(s)	1389
SseBI	AGGCCT	2 cut(s)	2031, 2204
SsiI	CCGC	4 cut(s)	63, 2421, 2953, 3207
SspI	AATATT	4 cut(s)	573, 609, 1150, 3381
SstI	GAGCTC	2 cut(s)	1357, 2215
StuI	AGGCCT	2 cut(s)	2031, 2204
StyD4I	CCNGG	2 cut(s)	69, 1588
StyI	CCWWGG	5 cut(s)	1218, 1894, 1942, 2250, 2650
TaaI	ACNGT	7 cut(s)	364, 866, 2261, 2915, 2968, 3111, 3167
TaiI	ACGT	3 cut(s)	45, 310, 2534
TaqI	TCGA	9 cut(s)	45, 737, 1242, 2016, 2050, 2660, 2810, 3292, 3452
TatI	WGTACW	2 cut(s)	2438, 3106
TfiI	GAWTC	8 cut(s)	270, 842, 2052, 2093, 2332, 2894, 3005, 3345
TscAI	CASTG	6 cut(s)	339, 379, 510, 2644, 2698, 2973
TseFI	GTSAC	3 cut(s)	1048, 2798, 3083
TseI	GCWGC	7 cut(s)	74, 1382, 2447, 2842, 2864, 2950, 3331
Tsp45I	GTSAC	3 cut(s)	1048, 2798, 3083
TspGWI	ACGGA	2 cut(s)	182, 783
TspRI	CASTG	6 cut(s)	339, 379, 510, 2644, 2698, 2973
Van91I	CCANNNNNTGG	2 cut(s)	989, 1900
VneI	GTGCAC	2 cut(s)	312, 1709
VpaK11BI	GGWCC	1 cut(s)	601
VspI	ATTAAT	2 cut(s)	3068, 3242
XagI	CCTNNNNNAGG	2 cut(s)	737, 1231
XapI	RAATTY	9 cut(s)	85, 659, 1078, 1291, 1321, 1373, 1932, 2400, 2477
XbaI	TCTAGA	2 cut(s)	872, 3017
XceI	RCATGY	8 cut(s)	905, 935, 1181, 1389, 1421, 1452, 1462, 3443
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1216, 2204, 2690
XmiI	GTMKAC	3 cut(s)	45, 193, 3436
XmnI	GAANNNNTTC	2 cut(s)	2331, 3141
ZrmI	AGTACT	1 cut(s)	3108
Zsp2I	ATGCAT	2 cut(s)	2875, 3445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.