Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004599

Physical Location & Seq

Genomic Coordinates Reverse (-)

64554062 .. 64560621

Gene Structure 6560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGGCAACGGAGGGTCTCATGAGAATGGTGGAAAGCCGTAAAGGTGAAAAGTGGCATTCATCGATGGATGCGGCAACATATGGATCTCCACTGAAAAGTATGGCAGCAGAGGAATTGGGCTTCCTTACAAAGGGGCACAGATTTCAGAGAGATAGAGCTGAGGCCATACCTAATCGAAGTGGTAGTGCCCCCCCAAGTATGGAGGGTTCCTTTTACGCTGTTGGGAACCTTTTAAGTCAACAGAACTCCAGTATGATAACAAGCTCAACTAATTCAAGGAACACAGTTCAAAATGTTCAGTCTGAAGAACTGTGTTCTGACCCATCTTATTTGGCATACTGCTTCGCTAATATGAACTTAAATGTAAGGCCTCCGCCACACCATGTTGTTGGTTCCAGCACCAATTGGAGATTGACTTCTTTAGACGACAGTGGCAATGGATCCTTCCATCTTTCTCAAGGTTCTCTTTCCACTCACAAGGAGGAGCTTGATGATGCTAGTTCATCCAAGCAAGCTTCAGATAATTTGGCAGAAACTAGTGTTTCAGCAATGGCGGTGAAGAACACTCATTCTTTGGCAAGCCATAATAAGAGTGTGCTGGATCGCATACAGGAAGACTTCCCCCGAACTCCATCTCCTCTGTATAATCAATCTGTCTCATCAAGTATTGCAACAGATGAACCGGTTGATATTGATGTACATTCAATTTCACCAAATGCTTCTTCTCCTAACATACGACAATTACAATCCTCAAATTCAGGCTCTATCGACATATATCCGGAGACAAGTTCCTTGGCTACCTCTTCTCCTAGGGCACTACATCCTAATGAGACAGGGAACTTACATGAAGATGAATCAAATATTGAGGATACTGGGGTGGGGAGTAATGGATCAATTGGTGGAGCCCTTGGGTTAGATCTTTCCCCAACTGGGTCTAGAATTAGAGCATCTAATATTAACAAACAACATGAGAAACAGTCTTATGGGACGGGTGTGCTACAACACCTTTTGTCTACACAACAAGGGTTGCCATATCAACTTCAGGCTGTTCAGGACCAAGTAGTTTCACAGTGTATGAATCATTGGCAAAGTAGGATGGATCCCCATGGCTATCCAAAGTTCTCTTCCATTGAGGTGCAGCCATCATTGCAATCACCTGGATTCACACCTCCCTTGTATGCTACAACAGCAGGGTATATGACTTCAGGAAGTGCTTTCTACCCCAATTTTCAGCCGTCCAGTATATATCCTGCACAATATGGTGCAAGTGGATATGCCATGGGTTCTACATTTCTTCCCCCATATATGGCTGCGTACCATTCTCATGGTTCCTTTCCTCTGCCTCTTGATGCTACTTTGGGTCAAAGCTTAAATGGTCGAACTGCAGGTGTTTCAACAGGGGAGAGAAGTCCCCATGAAGGTGATTTGCATCACCTAAGCAAGTTTTATGGCCAGCCTGGGCCAATGCTCCAGCCATCTTTTCTTGATCCCCTAAGTATGCAATACTATCCACGTCCCTTGGATGATTCATACAGTGCTTCAATTCAGTATGGTCAATTAGGTCCGAGGGGTATTATTGGAGGCCAGCTTTACCAACAAGAGTCAAATGTTACTGCATATGCAGGTGAACAGAAATTTCAGTCTGCAACTAATGGGTCTCTGGGCATTCCAAGTCCAAGAAAAATGGGAATCAATGGTAGTGGCTATTATGGTAGTCCTTCTAGCATGGGTGGCATGACATTTCCAGCCTCACCTCTTGGTAGTCCTATACCACCATCATCTCCAGTAGGCAGAACACATCACCATGGTCGGCAAAATGAATCGAGGTATCACCAAGGTTCAATAAGAAATGGTGGACTATATTCTGGGTGGCAAGGACAGAGAAGCTTTAACCACTTTGAGGACTCTAAAAGGCACTCCTTTCTTGAAGAACTGAAATCCAGTAATGCCCGTAAATTTGAACTCTCTGATATAGGAGGGCGCATTGCTGAATTCAGTGTGGATCAACATGGGAGTCGATTTATTCAGCAGAAGCTTGAATACTGCAGTGTCGAAGACAAGGTGTCTGTTTTCAAAGAGGTTCTTCCACATGCTTCAAAATTAATGACTGATGTATTTGGGAATTATGTTATTCAAAAGTTTTTTGAGTATGGGACTCCTGAACAGAAAAAGGAGCTTGCAGATCAGCTCAGTGGACAGATGTTGCCTTTAAGTTTGCAGATGTATGGTTGTCGTGTGATCCAGAAGGCTCTTGAAGTTATAGAGGTTGACCAGAAAACACAACTTGTGCATGAGCTTGATGGACATGTTATGAAATGTGTGCATGATCAAAATGGAAATCATGTCATACAGAAGTGTATAGAATGCATTCCTACAGAGAAAATTGGATTCATCATATCTTCTTTCCGAGACCAAGTTGCCAAACTTTCTACTCATCCATATGGTTGCCGTGTCATACAGAGAGTTTTGGAGCATTGTTCAGATGAGCTTCAAGGTCAGTGTGTTGTGGATGAGATTTTGGAATCTGCTTATGTTCTTGCTCAGAACCAGTATGGCAATTATGTCACCCAGCATGTTCTGGAAAAGGGAAAACCCCATGAAAGAAGCCAAATTATCAGCAAGTTGATTGGGAAAGTTGTACAATTGAGTCAGCATAAATATGCATCAAATGTTATTGAAAAGTGTTTAGAACATGGTGATGTTGCTGAGCGGGAGCTTATGATTGATGAAATCATTGGACAATTGGAGGAAAATGATAATCTATTGGTAAGTCAAGCTCAAGTGTTTTGGGTCAGGTTTGAATCAATTCAGATAAGTCAAGTAAAGCAAATATATTTTGTTTTTGGTTTTTTTGTCTGCAACTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006417 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009651 GO:0009819 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098542 GO:1901363 GO:1901700 GO:1903311 GO:1903313 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NABP PUF

Protein Analysis

957

Amino Acids

105.28

Weight (kDa)

5.98

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NABP	PF07990	406 - 656	5.5e-14	Nucleic acid binding protein NABP
PUF	PF00806	662 - 695	2.5e-10	Pumilio-family RNA binding repeat
PUF	PF00806	699 - 730	3.8e-09	Pumilio-family RNA binding repeat
PUF	PF00806	734 - 766	1.1e-08	Pumilio-family RNA binding repeat
PUF	PF00806	805 - 840	3.2e-12	Pumilio-family RNA binding repeat
PUF	PF00806	844 - 876	1.1e-06	Pumilio-family RNA binding repeat
PUF	PF00806	879 - 912	1e-11	Pumilio-family RNA binding repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20250 AT3G20250 AT3G20250
fragaria_vesca	FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910 FvH4_6g36910
malus_domestica	MD09G1165700.v1.1 MD17G1161900.v1.1
prunus_persica	Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1 Prupe.3G023300_v2.0.a1
pyrus_communis	pycom07g18900 pycom09g08300 pycom17g15500
rosa_chinensis	RchiOBHm_Chr2g0149341
rosa_laevigata	RLG00000020394
rosa_multiflora	Rmu_sc0000873.1_g000017
rosa_roxburghii	Rroxscaffold_2G00098200
rosa_rugosa	Rorug02G0410600 Rorug02G0410700 Rorug02G0410800
rosa_samantha	Rh2AG471400 Rh2BG483600 Rh2CG457300 Rh2DG492700
rosa_wichuraiana	Rw2G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1376, 1613
Acc36I	ACCTGC	2 cut(s)	1376, 1613
AccBSI	CCGCTC	1 cut(s)	2710
AccI	GTMKAC	1 cut(s)	1013
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	4 cut(s)	71, 374, 554, 2710
AcoI	YGGCCR	1 cut(s)	1450
AcsI	RAATTY	4 cut(s)	754, 1634, 1955, 1991
AcuI	CTGAAG	4 cut(s)	324, 501, 1025, 1188
AfaI	GTAC	3 cut(s)	699, 1316, 2640
AfiI	CCNNNNNNNGG	6 cut(s)	130, 199, 930, 1306, 1418, 1900
AflIII	ACRYGT	1 cut(s)	2305
AgeI	ACCGGT	1 cut(s)	682
AhdI	GACNNNNNGTC	1 cut(s)	2062
AhlI	ACTAGT	1 cut(s)	536
AjiI	CACGTC	1 cut(s)	1514
AjnI	CCWGG	2 cut(s)	1156, 1456
AjuI	GAANNNNNNNTTGG	4 cut(s)	706, 738, 1108, 1140
AloI	GAACNNNNNNTCC	2 cut(s)	619, 651
Alw26I	GTCTC	6 cut(s)	20, 661, 776, 824, 1662, 2403
Aor13HI	TCCGGA	1 cut(s)	778
AoxI	GGCC	5 cut(s)	162, 368, 1450, 1460, 1582
ApeKI	GCWGC	3 cut(s)	104, 1138, 1310
ApoI	RAATTY	4 cut(s)	754, 1634, 1955, 1991
AseI	ATTAAT	1 cut(s)	2102
AsiGI	ACCGGT	1 cut(s)	682
Asp700I	GAANNNNTTC	2 cut(s)	2367, 2805
AspA2I	CCTAGG	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	1983
AspS9I	GGNCC	3 cut(s)	1054, 1460, 1562
AvaII	GGWCC	2 cut(s)	1054, 1562
AvrII	CCTAGG	1 cut(s)	809
BaeGI	GKGCMC	3 cut(s)	138, 190, 817
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BalI	TGGCCA	1 cut(s)	1452
BamHI	GGATCC	2 cut(s)	440, 1099
BanII	GRGCYC	1 cut(s)	907
BarI	GAAGNNNNNNTAC	2 cut(s)	2024, 2056
BbsI	GAAGAC	2 cut(s)	621, 2061
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	116, 1150, 1297
BccI	CCATC	9 cut(s)	58, 331, 456, 640, 1090, 1150, 1483, 1783, 2294
BceAI	ACGGC	3 cut(s)	21, 1219, 2433
BciT130I	CCWGG	2 cut(s)	1158, 1458
BciVI	GTATCC	1 cut(s)	862
BclI	TGATCA	1 cut(s)	2326
BcoDI	GTCTC	6 cut(s)	20, 661, 776, 824, 1662, 2403
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	5 cut(s)	498, 537, 810, 936, 1722
BfmI	CTRYAG	3 cut(s)	1383, 2044, 2373
BfuAI	ACCTGC	2 cut(s)	1376, 1613
BfuI	GTATCC	1 cut(s)	862
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	4 cut(s)	72, 105, 1139, 1311
BlnI	CCTAGG	1 cut(s)	809
BlpI	GCTNAGC	1 cut(s)	2706
BlsI	GCNGC	4 cut(s)	73, 106, 1140, 1312
Bme1390I	CCNGG	2 cut(s)	1158, 1458
Bme18I	GGWCC	2 cut(s)	1054, 1562
BmeRI	GACNNNNNGTC	1 cut(s)	2062
BmgBI	CACGTC	1 cut(s)	1514
BmgT120I	GGNCC	3 cut(s)	1054, 1460, 1562
BmiI	GGNNCC	7 cut(s)	208, 227, 394, 442, 904, 1101, 1330
BmrFI	CCNGG	2 cut(s)	1158, 1458
BmrI	ACTGGG	2 cut(s)	882, 939
BmsI	GCATC	6 cut(s)	58, 484, 956, 1339, 1438, 2672
BmuI	ACTGGG	2 cut(s)	882, 939
BpiI	GAAGAC	2 cut(s)	621, 2061
BpmI	CTGGAG	3 cut(s)	232, 1454, 1767
Bpu10I	CCTNAGC	2 cut(s)	159, 1436
Bpu1102I	GCTNAGC	1 cut(s)	2706
BpuEI	CTTGAG	2 cut(s)	441, 2763
Bsa29I	ATCGAT	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	1428
BsaI	GGTCTC	3 cut(s)	20, 1662, 2403
BsaWI	WCCGGW	2 cut(s)	682, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 790, 820
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 199, 930, 1306, 1418, 1900
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	7 cut(s)	249, 877, 934, 1239, 1784, 1941, 2548
Bse3DI	GCAATG	4 cut(s)	442, 555, 1145, 1983
Bse8I	GATNNNNATC	1 cut(s)	1428
BseAI	TCCGGA	1 cut(s)	778
BseBI	CCWGG	2 cut(s)	1158, 1458
BseCI	ATCGAT	1 cut(s)	62
BseGI	GGATG	7 cut(s)	73, 503, 820, 1101, 1528, 2434, 2515
BseJI	GATNNNNATC	1 cut(s)	1428
BseLI	CCNNNNNNNGG	6 cut(s)	130, 199, 930, 1306, 1418, 1900
BseMI	GCAATG	4 cut(s)	442, 555, 1145, 1983
BseMII	CTCAG	4 cut(s)	150, 2203, 2555, 2697
BseNI	ACTGG	7 cut(s)	249, 877, 934, 1239, 1784, 1941, 2548
BseRI	GAGGAG	2 cut(s)	497, 627
BseSI	GKGCMC	3 cut(s)	138, 190, 817
BseXI	GCAGC	3 cut(s)	116, 1150, 1297
BseYI	CCCAGC	1 cut(s)	2568
BsgI	GTGCAG	2 cut(s)	1157, 1236
BshFI	GGCC	5 cut(s)	164, 370, 1452, 1462, 1584
BshTI	ACCGGT	1 cut(s)	682
BshVI	ATCGAT	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	683, 779
BslFI	GGGAC	4 cut(s)	1000, 1395, 1500, 2167
BslI	CCNNNNNNNGG	6 cut(s)	130, 199, 930, 1306, 1418, 1900
BsmAI	GTCTC	6 cut(s)	20, 661, 776, 824, 1662, 2403
BsmFI	GGGAC	4 cut(s)	1000, 1395, 1500, 2167
BsmI	GAATGC	4 cut(s)	55, 1665, 2367, 2369
BsnI	GGCC	5 cut(s)	164, 370, 1452, 1462, 1584
Bso31I	GGTCTC	3 cut(s)	20, 1662, 2403
Bsp1286I	GDGCHC	4 cut(s)	138, 190, 817, 907
Bsp13I	TCCGGA	1 cut(s)	778
Bsp1407I	TGTACA	2 cut(s)	697, 2638
Bsp1720I	GCTNAGC	1 cut(s)	2706
Bsp19I	CCATGG	3 cut(s)	1105, 1278, 1804
BspACI	CCGC	4 cut(s)	71, 374, 554, 2710
BspANI	GGCC	5 cut(s)	164, 370, 1452, 1462, 1584
BspCNI	CTCAG	4 cut(s)	151, 2202, 2554, 2698
BspDI	ATCGAT	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	7 cut(s)	208, 227, 394, 442, 904, 1101, 1330
BspMAI	CTGCAG	2 cut(s)	1387, 2048
BspMI	ACCTGC	2 cut(s)	1376, 1613
BspTNI	GGTCTC	3 cut(s)	20, 1662, 2403
BsrBI	CCGCTC	1 cut(s)	2710
BsrDI	GCAATG	4 cut(s)	442, 555, 1145, 1983
BsrFI	RCCGGY	1 cut(s)	682
BsrGI	TGTACA	2 cut(s)	697, 2638
BsrI	ACTGG	7 cut(s)	249, 877, 934, 1239, 1784, 1941, 2548
BssAI	RCCGGY	1 cut(s)	682
BssT1I	CCWWGG	8 cut(s)	792, 809, 907, 1105, 1278, 1518, 1804, 1834
Bst2UI	CCWGG	2 cut(s)	1158, 1458
Bst4CI	ACNGT	6 cut(s)	286, 312, 431, 978, 1071, 1535
Bst6I	CTCTTC	2 cut(s)	808, 1129
BstAUI	TGTACA	2 cut(s)	697, 2638
BstC8I	GCNNGC	5 cut(s)	513, 580, 1454, 1586, 2178
BstDEI	CTNAG	6 cut(s)	159, 1436, 1493, 2189, 2541, 2706
BstDSI	CCRYGG	3 cut(s)	1105, 1278, 1804
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	7 cut(s)	73, 503, 820, 1101, 1528, 2434, 2515
BstHHI	GCGC	1 cut(s)	1983
BstMAI	GTCTC	6 cut(s)	20, 661, 776, 824, 1662, 2403
BstMWI	GCNNNNNNNGC	3 cut(s)	1147, 1187, 1731
BstNI	CCWGG	2 cut(s)	1158, 1458
BstNSI	RCATGY	3 cut(s)	2093, 2309, 2576
BstSCI	CCNGG	2 cut(s)	1156, 1456
BstSFI	CTRYAG	3 cut(s)	1383, 2044, 2373
BstSLI	GKGCMC	3 cut(s)	138, 190, 817
BstV1I	GCAGC	3 cut(s)	116, 1150, 1297
BstV2I	GAAGAC	2 cut(s)	621, 2061
BstX2I	RGATCY	4 cut(s)	83, 440, 916, 1099
BstXI	CCANNNNNNTGG	2 cut(s)	389, 1325
BstYI	RGATCY	4 cut(s)	83, 440, 916, 1099
Bsu15I	ATCGAT	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	5 cut(s)	164, 370, 1452, 1462, 1584
BsuTUI	ATCGAT	1 cut(s)	62
BtgI	CCRYGG	3 cut(s)	1105, 1278, 1804
BtrI	CACGTC	1 cut(s)	1514
BtsCI	GGATG	7 cut(s)	73, 503, 820, 1101, 1528, 2434, 2515
BtsI	GCAGTG	1 cut(s)	2053
BtsIMutI	CAGTG	8 cut(s)	89, 436, 1076, 1540, 2002, 2053, 2197, 2504
BveI	ACCTGC	2 cut(s)	1376, 1613
Cac8I	GCNNGC	5 cut(s)	513, 580, 1454, 1586, 2178
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	1983
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	3 cut(s)	1054, 1460, 1562
ClaI	ATCGAT	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	698, 1315, 2639
CspAI	ACCGGT	1 cut(s)	682
CspCI	CAANNNNNGTGG	4 cut(s)	1500, 1535, 1681, 1716
CviQI	GTAC	3 cut(s)	698, 1315, 2639
DdeI	CTNAG	6 cut(s)	159, 1436, 1493, 2189, 2541, 2706
DriI	GACNNNNNGTC	1 cut(s)	2062
EaeI	YGGCCR	1 cut(s)	1450
Eam1104I	CTCTTC	2 cut(s)	808, 1129
Eam1105I	GACNNNNNGTC	1 cut(s)	2062
EarI	CTCTTC	2 cut(s)	808, 1129
EciI	GGCGGA	1 cut(s)	363
Eco130I	CCWWGG	8 cut(s)	792, 809, 907, 1105, 1278, 1518, 1804, 1834
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	907
Eco31I	GGTCTC	3 cut(s)	20, 1662, 2403
Eco47I	GGWCC	2 cut(s)	1054, 1562
Eco57I	CTGAAG	4 cut(s)	324, 501, 1025, 1188
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	1991
EcoRII	CCWGG	2 cut(s)	1156, 1456
EcoT14I	CCWWGG	8 cut(s)	792, 809, 907, 1105, 1278, 1518, 1804, 1834
EcoT22I	ATGCAT	2 cut(s)	2369, 2665
EcoT38I	GRGCYC	1 cut(s)	907
ErhI	CCWWGG	8 cut(s)	792, 809, 907, 1105, 1278, 1518, 1804, 1834
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 2067, 2099
FaqI	GGGAC	4 cut(s)	1000, 1395, 1500, 2167
FauI	CCCGC	1 cut(s)	2703
FauNDI	CATATG	3 cut(s)	79, 1618, 2440
FbaI	TGATCA	1 cut(s)	2326
FblI	GTMKAC	1 cut(s)	1013
Fnu4HI	GCNGC	4 cut(s)	72, 105, 1139, 1311
FokI	GGATG	7 cut(s)	80, 490, 807, 1108, 1535, 2421, 2522
FriOI	GRGCYC	1 cut(s)	907
Fsp4HI	GCNGC	4 cut(s)	72, 105, 1139, 1311
FspBI	CTAG	5 cut(s)	498, 537, 810, 936, 1722
GlaI	GCGC	1 cut(s)	1982
GluI	GCNGC	4 cut(s)	72, 105, 1139, 1311
GsaI	CCCAGC	1 cut(s)	2572
GsuI	CTGGAG	3 cut(s)	232, 1454, 1767
HaeIII	GGCC	5 cut(s)	164, 370, 1452, 1462, 1584
HapII	CCGG	2 cut(s)	683, 779
HhaI	GCGC	1 cut(s)	1983
Hin6I	GCGC	1 cut(s)	1981
HinP1I	GCGC	1 cut(s)	1981
HincII	GTYRAC	2 cut(s)	239, 2269
HindII	GTYRAC	2 cut(s)	239, 2269
HindIII	AAGCTT	4 cut(s)	513, 1366, 1885, 2033
HpaII	CCGG	2 cut(s)	683, 779
Hpy166II	GTNNAC	6 cut(s)	239, 1014, 1628, 1856, 2195, 2269
Hpy8I	GTNNAC	6 cut(s)	239, 1014, 1628, 1856, 2195, 2269
HpyAV	CCTTC	4 cut(s)	454, 1412, 1728, 2239
HpyCH4III	ACNGT	6 cut(s)	286, 312, 431, 978, 1071, 1535
HpyCH4IV	ACGT	1 cut(s)	1513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1147, 1187, 1731
HpyF3I	CTNAG	6 cut(s)	159, 1436, 1493, 2189, 2541, 2706
HpySE526I	ACGT	1 cut(s)	1513
HspAI	GCGC	1 cut(s)	1981
Kpn2I	TCCGGA	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	2326
LmnI	GCTCC	6 cut(s)	484, 902, 1473, 2173, 2470, 2713
Lsp1109I	GCAGC	3 cut(s)	116, 1150, 1297
LweI	GCATC	6 cut(s)	58, 484, 956, 1339, 1438, 2672
MaeI	CTAG	5 cut(s)	498, 537, 810, 936, 1722
MaeII	ACGT	1 cut(s)	1513
MaeIII	GTNAC	2 cut(s)	1609, 2563
MbiI	CCGCTC	1 cut(s)	2710
MfeI	CAATTG	4 cut(s)	403, 894, 2642, 2741
MflI	RGATCY	4 cut(s)	83, 440, 916, 1099
MhlI	GDGCHC	4 cut(s)	138, 190, 817, 907
MlsI	TGGCCA	1 cut(s)	1452
MluNI	TGGCCA	1 cut(s)	1452
MlyI	GAGTC	5 cut(s)	1610, 1898, 2023, 2149, 2656
Mox20I	TGGCCA	1 cut(s)	1452
Mph1103I	ATGCAT	2 cut(s)	2369, 2665
MroI	TCCGGA	1 cut(s)	778
MroXI	GAANNNNTTC	2 cut(s)	2367, 2805
MscI	TGGCCA	1 cut(s)	1452
MseI	TTAA	7 cut(s)	233, 359, 957, 1370, 1890, 2102, 2210
Msp20I	TGGCCA	1 cut(s)	1452
MspI	CCGG	2 cut(s)	683, 779
MspR9I	CCNGG	2 cut(s)	1158, 1458
MunI	CAATTG	4 cut(s)	403, 894, 2642, 2741
Mva1269I	GAATGC	4 cut(s)	55, 1665, 2367, 2369
MvaI	CCWGG	2 cut(s)	1158, 1458
MwoI	GCNNNNNNNGC	3 cut(s)	1147, 1187, 1731
NcoI	CCATGG	3 cut(s)	1105, 1278, 1804
NdeI	CATATG	3 cut(s)	79, 1618, 2440
NlaIV	GGNNCC	7 cut(s)	208, 227, 394, 442, 904, 1101, 1330
NmuCI	GTSAC	1 cut(s)	2563
NsiI	ATGCAT	2 cut(s)	2369, 2665
NspI	RCATGY	3 cut(s)	2093, 2309, 2576
PagI	TCATGA	1 cut(s)	18
PaqCI	CACCTGC	2 cut(s)	1376, 1613
PceI	AGGCCT	1 cut(s)	370
PciI	ACATGT	1 cut(s)	2305
PctI	GAATGC	4 cut(s)	55, 1665, 2367, 2369
PdmI	GAANNNNTTC	2 cut(s)	2367, 2805
PfeI	GAWTC	9 cut(s)	854, 1078, 1161, 1526, 1689, 1820, 2388, 2522, 2801
PinAI	ACCGGT	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	73, 106, 1140, 1312
PleI	GAGTC	5 cut(s)	1609, 1898, 2022, 2149, 2655
PpsI	GAGTC	5 cut(s)	1609, 1898, 2022, 2149, 2655
PscI	ACATGT	1 cut(s)	2305
PshBI	ATTAAT	1 cut(s)	2102
Psp6I	CCWGG	2 cut(s)	1156, 1456
PspFI	CCCAGC	1 cut(s)	2568
PspGI	CCWGG	2 cut(s)	1156, 1456
PspN4I	GGNNCC	7 cut(s)	208, 227, 394, 442, 904, 1101, 1330
PspPI	GGNCC	3 cut(s)	1054, 1460, 1562
PsrI	GAACNNNNNNTAC	2 cut(s)	190, 222
PstI	CTGCAG	2 cut(s)	1387, 2048
PsuI	RGATCY	4 cut(s)	83, 440, 916, 1099
RsaI	GTAC	3 cut(s)	699, 1316, 2640
RsaNI	GTAC	3 cut(s)	698, 1315, 2639
SaqAI	TTAA	7 cut(s)	233, 359, 957, 1370, 1890, 2102, 2210
SatI	GCNGC	4 cut(s)	72, 105, 1139, 1311
Sau96I	GGNCC	3 cut(s)	1054, 1460, 1562
SchI	GAGTC	5 cut(s)	1610, 1898, 2023, 2149, 2656
ScrFI	CCNGG	2 cut(s)	1158, 1458
SduI	GDGCHC	4 cut(s)	138, 190, 817, 907
SfaNI	GCATC	6 cut(s)	58, 484, 956, 1339, 1438, 2672
SfcI	CTRYAG	3 cut(s)	1383, 2044, 2373
SinI	GGWCC	2 cut(s)	1054, 1562
SmlI	CTYRAG	2 cut(s)	456, 2778
SmoI	CTYRAG	2 cut(s)	456, 2778
SpeI	ACTAGT	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	4 cut(s)	71, 374, 554, 2710
SspI	AATATT	2 cut(s)	862, 955
SspMI	CTAG	5 cut(s)	498, 537, 810, 936, 1722
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	2 cut(s)	1156, 1456
StyI	CCWWGG	8 cut(s)	792, 809, 907, 1105, 1278, 1518, 1804, 1834
TaaI	ACNGT	6 cut(s)	286, 312, 431, 978, 1071, 1535
TaiI	ACGT	1 cut(s)	1516
TaqI	TCGA	7 cut(s)	62, 175, 768, 1378, 1823, 2017, 2052
TatI	WGTACW	2 cut(s)	697, 2638
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	9 cut(s)	854, 1078, 1161, 1526, 1689, 1820, 2388, 2522, 2801
Tru1I	TTAA	7 cut(s)	233, 359, 957, 1370, 1890, 2102, 2210
Tru9I	TTAA	7 cut(s)	233, 359, 957, 1370, 1890, 2102, 2210
TscAI	CASTG	8 cut(s)	96, 436, 1076, 1540, 2002, 2053, 2197, 2504
TseFI	GTSAC	1 cut(s)	2563
TseI	GCWGC	3 cut(s)	104, 1138, 1310
Tsp45I	GTSAC	1 cut(s)	2563
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	8 cut(s)	96, 436, 1076, 1540, 2002, 2053, 2197, 2504
VpaK11BI	GGWCC	2 cut(s)	1054, 1562
VspI	ATTAAT	1 cut(s)	2102
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	4 cut(s)	754, 1634, 1955, 1991
XbaI	TCTAGA	1 cut(s)	935
XceI	RCATGY	3 cut(s)	2093, 2309, 2576
XmaJI	CCTAGG	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	1013
XmnI	GAANNNNTTC	2 cut(s)	2367, 2805
XspI	CTAG	5 cut(s)	498, 537, 810, 936, 1722
Zsp2I	ATGCAT	2 cut(s)	2369, 2665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.