Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Forward (+)

32349261 .. 32355720

Gene Structure 6460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40930.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3927 bp

ATGTTCTCTCCGGGAACGAAGCGGACCAACGCCAACCCTCGCCGCGACCAAGGCTCTCCGGCCACTCCACTCTCCGAGATCCGCCGCTCCTCCCCGGACAGTTCCGTCCCCAATCGGCCCTCCACCGGCACTCCCGCCCCCTGGGCTCCTCGCCTCTCCGTCCTGGCCAGGGTTAATCAAAACGAGAAAGGGGATGAAATCAAGCCTGTATACGTCGGAGAGTTTCCGCAGGTCGTTCGTGACGAACAGGCCAGTATGCTGCAGAAGCATGTCCATGGTGATGCTTCGGTGTCCGGTGGAATGGAGAGAGGGACATCACTGGCGTGGATTGTATGCGGAAGCAGGCTCTTTGTGTGGAGTTTTCTGTCTCCTGCTTCGGTGGCGAATTGCGCTGTGCTTGAGATCCCTGGGAGTGTTTTTGAAGGTGGGGAGGCCGGGAGGGGCGGTGGGAGCGCGTGGATGATTCGTGTTGTTAGTTGGGATAGTATGTCTGTGAGAACGAAGAAAGTTGTGAAGCAATGTAGCTCGGCTGGGATTGTACTGTGTAATAAAAAAACTCGGGCTATTGTGTATTGGCATGATATTTACGGTGAAGGGAGAGCTGATCCGGTTGTTAGTGTTGCGTCTTCTGATGAATTGGAGGTGGTGTCGTCCTCACCTGTTGATAGGAAGACCCCCCAAAGGAGGCAGCAGTTGCTTAGCAGGCATAGGAGTAGTTTGAGTGGATCTTCTACTTTTAACTCTTTGATTGTGTGCGCTGTCCCTGATTCCCGTTTTGAGTGTGTTGCAGTTGCCTGTAGTTCAAATGGTGAGCTATGGCGGTTTCATTGTAGCCCCTCGGGTGTTAGCCGTAAGAAAGTATATCAGGACAATCAGATTTCATCCTCCCAAGGTGGTGACAATGACATCAAGGGCTATCCAAGGTCACTGACCTGGTGTTTTCCAAATCTTCAAGTGGTGGAATCCCACCGGCAATTTGTTGTTCTGACAGATCGCGAGATGCAATGTTTTAGCATTGAACTTTCTCCTGATTATGTTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTCAGATGGTGACAAGGGTATCAAAAAGGATTTGGCTGGCCAGAAGCGAATCTGGCCTCTTGACATGCAGGTAGACTATCATGGTAAAGTGATTACCATTCTAGTTGCTATTATCTGCTTGGACCGGGGTAGTGGTTCAAGCTACACACAGTATTCTCTTTTAACCATGCAGTATAAATCTGGAGGTAGTATAGTATCTACTCAAGAAACAGTTTTAGAGAGAAAAGATCCTATCCAGGTGATCATTCCAAAAGCAAGAATAGAAGATGAAGACTTCTTATTTTCCATGAGACTACGGGTAGGGGGAAAGCCTTCCGGATCAGCAATTATTCTTTCTGGTGATGGAACTGCTACAGTATCCCATTATTATAGAACGACCACACGGCTCTATAGATTTGACCTACCTTATGATGCTGGAAAGGTTCTAGATGCTTCAATTCTTCCCTCGACAGATGACGGTGAAGAAGGAGCATGGGTTGTTCTAACTGAGAAGGCAGGAATATGGGCAATACCTGAGAAGGCTGTTATGATTGGTGGAGTTGAACCTCCTGAGCGAAGTCTATCCCGTAAAGGTAGCTCCAATGAAGGGTCCGCACAAGAAGAGAGAAAGAACCTTACATTTGCAGGGAATCTTGCTCCTAGAAGGGCTAGTTCTGAAGCATGGGATGCTGGTGAGAGACAAAGGGTTATGCCCGTAATCGCACGTCAAAGTGCCCAAGATGAAGAATCAGAAACTTTACTGAACCAGCTTTTCCATGATTATCATTTACATGGGCAGGTTGATGCATCACTTGAAAAACTAAAAAATGCGGGGGCTTTTGAAAGGGATAGAGAGACAAATGTTTTTGCACGACTGAGCAAGTCAATTGTTGATACCTTAGCTAAACATTGGACAACAACCAGGGGAGCTGAGATTTTGTCAATGGCCGTGGTATCCAACCAACTCACGGATAAGCAACAGAAGCATACGAAATTTCTGGAGTTTCTTGCTCTCTCCAAATGTCATGAGGAGCTGTGTTCTAGACAGAGACATTCTTTGCAAATTATCTTGGAACACGGAGAAAAGCTTGCTGGAATGATTCAACTACGGGAATTGCAGAACATCATCAGCCAGAACCGCTCCAGTGGACTCATCACCTCCAGTTCTAGTCCAGAAAATCAAATATCTGGTGCTCTGTGGGATCTTATTCAATTAGTTGGTGATAGAGCCCGTCGGAATACAGTGCTTCTAATGGACAGGGACAATGCTGAAGTATTCTACAGTAAAGTTTCTGATCTTCAAGAAGTGTTTTCTTGCTTAGACAAGCAGCTGGAGTATGTAATCCCTTCAGAGCAGCCATTCAGGATTCAGGTCCAGAGAGCTTGTGAACTCTCAAATGCATGTGTTAGTATTGTACGTGCAGCCATGCAATACAGAAACACACATCACTTGTGGTATCCACCACCTGAGTGCTTAACACCTTGGTATTGCCAAGCTGTTGTACGCAATGGGATGTGGCAGGTTGCTTCCTTCATGCTGCAACTGTTAAAAGAAGCATCTCAAATTGATGTCTCTGCAAAATCAGATTTATATTCTCATCTAGAAGTGCTGGCTGAAGTTCTGCTCGAGGCATATGCTGGTTCTGTCACCGCTAAAGTTGAACTCGGTGACGAACACAAAGGCTTATTGGATGAGTATTGGAATAGAAGGGATGCTCTCCTAGACTCACTTTATCACCAAGTAAAAGATTCTGTGGAAGTTGGCCATGAGAATTTGAATGATGGATCTGATGATATCAATGAAGAACTTTTGGGGAAGCTTTCGTCGTGTTTGCTTCCAATGGCGAAGCGGCATGAATGCTACAGTACTTTATGGAAAATATGCTGTGACATTAATGATTCTGAACTACTGAAAAATCTGATGCATGACAGCATGGGACCTAATGGTGGGTTCAGTTACTATGTGTTCAAACAACTATATGCGAGGAAACAATTTTCCAACCTTCTCAGGCTTGGGGAAGAGTTTCACGAAGCGCTCTCAATATTTTTAAAGTATCATCCAGATCTTCTGTGGCTTCATGAAGTGTTCCTTCATCAGTTTTCCTCAGCTTCAGACACTCTTCATGAATTAGCTCTTTCTCAAGAAGAAAGCTCAATTTCAGAGGCTGAAGATGGGACTGGTCCTGGGAATATGACCACATTACCGAAACTGGCAGATAGAAAGCGTCTTTTGAATCTCTCAAAAATAGCTGCAATTGCAGGTAAGGATGCCGACTGTGAGATCAAGGTGAAGCGCATTGAGGCTGATTTGAGGATCCTAAAAGTGCAGGAAGAAGTAATAGAACTCCTTTCTTCTATTGAAACAAAGAAAAACCTTGACCAGCGCCTACTTCATCCTGAAGATCTTATCAAGCTGTGCCTTGAAGGTGAAAGCGCAGAGCTCTCATTGCAGGCGTTTGATGTATTTGCATGGACCAGCTCCTCCTTTCGCCGGATCCATGCAAACCTCTTGGAGGATTGCTGGAGAAATGCGGCTGATCAAGATGATTGGAGTAAACTGTACCATGCATCGGTCTCTGAAGGGTGGAGTGATGAGGAAACTCTGCAGAACCTGAAAGACACGGTACTTTTTCAGGCTTCAAGTAGATGTTACGGGCCTGAAGCCGAGACTTTTGGAGAAGGGTTTGATGAAGTGCTCACACTGAGACAAGAAAATGTGGAGCCTTCAACCATGAAAGATTCAGTTTCTTCTGTGGAGGCCATACTTATGCAGCACAAGGATTACTCGGAGGCAGGAAAGCTGATGCTTACTGCAATCATGCTAGGGAGTTCACAGGATGATACCATAGAGGATGAGGGCCCTGTTCCTATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1309

Amino Acids

146.0

Weight (kDa)

5.49

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	6 - 425	7.3e-32	Nup133 N terminal like
Nucleoporin_C	PF03177	901 - 1055	2.3e-09	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	5 cut(s)	220, 1129, 1837, 2560, 3299
AccBSI	CCGCTC	2 cut(s)	87, 2190
AccI	GTMKAC	2 cut(s)	210, 1143
AccII	CGCG	3 cut(s)	45, 455, 996
AccIII	TCCGGA	1 cut(s)	1385
AcoI	YGGCCR	5 cut(s)	60, 165, 1108, 1995, 2812
AcsI	RAATTY	2 cut(s)	2042, 2821
AcuI	CTGAAG	9 cut(s)	1746, 2340, 2382, 2685, 3144, 3237, 3468, 3648, 3729
AfaI	GTAC	6 cut(s)	540, 2466, 2553, 2917, 3611, 3675
AfeI	AGCGCT	1 cut(s)	3084
AjiI	CACGTC	1 cut(s)	1775
AjnI	CCWGG	8 cut(s)	140, 162, 167, 406, 932, 1305, 1970, 3232
AleI	CACNNNNGTG	2 cut(s)	322, 2518
Alw21I	GWGCWC	3 cut(s)	2245, 3492, 3747
AlwNI	CAGNNNCTG	2 cut(s)	3215, 3661
Ama87I	CYCGRG	3 cut(s)	558, 838, 2675
Aor13HI	TCCGGA	1 cut(s)	1385
Aor51HI	AGCGCT	1 cut(s)	3084
ApaI	GGGCCC	1 cut(s)	3911
ApeKI	GCWGC	8 cut(s)	259, 688, 2377, 2404, 2471, 2587, 3299, 3820
ApoI	RAATTY	2 cut(s)	2042, 2821
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
AseI	ATTAAT	1 cut(s)	2943
Asp700I	GAANNNNTTC	2 cut(s)	1381, 3072
AspLEI	GCGC	7 cut(s)	392, 455, 758, 3085, 3345, 3435, 3485
AsuC2I	CCSGG	4 cut(s)	12, 95, 436, 1196
AvaI	CYCGRG	3 cut(s)	558, 838, 2675
AvaII	GGWCC	7 cut(s)	24, 1192, 1659, 2422, 2987, 3230, 3522
BaeGI	GKGCMC	2 cut(s)	1786, 3911
BaeI	ACNNNNGTAYC	2 cut(s)	1072, 1105
BalI	TGGCCA	3 cut(s)	167, 1110, 2814
BamHI	GGATCC	2 cut(s)	3363, 3543
BanII	GRGCYC	4 cut(s)	148, 2281, 3492, 3911
BbsI	GAAGAC	3 cut(s)	618, 677, 1347
Bbv12I	GWGCWC	3 cut(s)	2245, 3492, 3747
BbvCI	CCTCAGC	1 cut(s)	3154
BbvI	GCAGC	8 cut(s)	246, 700, 2389, 2416, 2483, 2574, 3286, 3832
BccI	CCATC	4 cut(s)	1070, 1406, 2825, 3215
BceAI	ACGGC	3 cut(s)	834, 1469, 1982
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 2666, 2700
BciT130I	CCWGG	8 cut(s)	142, 164, 169, 408, 934, 1307, 1972, 3234
BciVI	GTATCC	3 cut(s)	1438, 2014, 2517
BclI	TGATCA	2 cut(s)	1311, 3586
BcnI	CCSGG	4 cut(s)	12, 95, 436, 1196
BfaI	CTAG	9 cut(s)	1172, 1496, 1710, 1719, 2091, 2217, 2651, 2771, 3872
BfmI	CTRYAG	7 cut(s)	260, 796, 1422, 1459, 2329, 2911, 3653
BfoI	RGCGCY	2 cut(s)	3086, 3436
BfuAI	ACCTGC	5 cut(s)	220, 1129, 1837, 2560, 3299
BfuI	GTATCC	3 cut(s)	1438, 2014, 2517
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	2 cut(s)	3112, 3451
BlpI	GCTNAGC	1 cut(s)	698
BmcAI	AGTACT	1 cut(s)	2917
Bme18I	GGWCC	7 cut(s)	24, 1192, 1659, 2422, 2987, 3230, 3522
BmeT110I	CYCGRG	3 cut(s)	558, 838, 2675
BmgBI	CACGTC	1 cut(s)	1775
BmiI	GGNNCC	7 cut(s)	147, 1660, 2988, 3365, 3545, 3771, 3909
BpiI	GAAGAC	3 cut(s)	618, 677, 1347
BpmI	CTGGAG	6 cut(s)	1272, 2069, 2176, 2194, 2402, 3592
Bpu10I	CCTNAGC	3 cut(s)	1620, 1948, 3154
Bpu1102I	GCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	3 cut(s)	419, 1257, 3174
BpuMI	CCSGG	4 cut(s)	12, 95, 436, 1196
BsaAI	YACGTR	1 cut(s)	2468
BsaI	GGTCTC	2 cut(s)	1059, 3628
BsaWI	WCCGGW	3 cut(s)	293, 607, 1385
BsaXI	ACNNNNNCTCC	8 cut(s)	115, 145, 430, 460, 632, 662, 1530, 1560
Bse118I	RCCGGY	2 cut(s)	125, 969
Bse1I	ACTGG	6 cut(s)	252, 324, 2193, 2211, 3232, 3264
Bse3DI	GCAATG	4 cut(s)	524, 1010, 2563, 3494
BseAI	TCCGGA	1 cut(s)	1385
BseBI	CCWGG	8 cut(s)	142, 164, 169, 408, 934, 1307, 1972, 3234
BseMI	GCAATG	4 cut(s)	524, 1010, 2563, 3494
BseNI	ACTGG	6 cut(s)	252, 324, 2193, 2211, 3232, 3264
BseRI	GAGGAG	4 cut(s)	79, 138, 2093, 3520
BseSI	GKGCMC	2 cut(s)	1786, 3911
BseXI	GCAGC	8 cut(s)	246, 700, 2389, 2416, 2483, 2574, 3286, 3832
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	2 cut(s)	2490, 3395
Bsh1236I	CGCG	3 cut(s)	45, 455, 996
BsiHKAI	GWGCWC	3 cut(s)	2245, 3492, 3747
BsiHKCI	CYCGRG	3 cut(s)	558, 838, 2675
BslFI	GGGAC	6 cut(s)	92, 325, 746, 2324, 3000, 3238
BsmFI	GGGAC	6 cut(s)	92, 325, 746, 2324, 3000, 3238
BsmI	GAATGC	1 cut(s)	2912
Bso31I	GGTCTC	2 cut(s)	1059, 3628
BsoBI	CYCGRG	3 cut(s)	558, 838, 2675
Bsp120I	GGGCCC	1 cut(s)	3907
Bsp1286I	GDGCHC	7 cut(s)	148, 1786, 2245, 2281, 3492, 3747, 3911
Bsp13I	TCCGGA	1 cut(s)	1385
Bsp1720I	GCTNAGC	1 cut(s)	698
Bsp19I	CCATGG	1 cut(s)	274
Bsp68I	TCGCGA	1 cut(s)	996
BspEI	TCCGGA	1 cut(s)	1385
BspFNI	CGCG	3 cut(s)	45, 455, 996
BspHI	TCATGA	4 cut(s)	1057, 2074, 3127, 3172
BspLI	GGNNCC	7 cut(s)	147, 1660, 2988, 3365, 3545, 3771, 3909
BspMAI	CTGCAG	2 cut(s)	264, 3657
BspMI	ACCTGC	5 cut(s)	220, 1129, 1837, 2560, 3299
BspTNI	GGTCTC	2 cut(s)	1059, 3628
BsrBI	CCGCTC	2 cut(s)	87, 2190
BsrDI	GCAATG	4 cut(s)	524, 1010, 2563, 3494
BsrFI	RCCGGY	2 cut(s)	125, 969
BsrI	ACTGG	6 cut(s)	252, 324, 2193, 2211, 3232, 3264
BssAI	RCCGGY	2 cut(s)	125, 969
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	5 cut(s)	49, 274, 889, 920, 2531
Bst1107I	GTATAC	1 cut(s)	211
Bst2UI	CCWGG	8 cut(s)	142, 164, 169, 408, 934, 1307, 1972, 3234
Bst6I	CTCTTC	3 cut(s)	1665, 3063, 3174
BstAPI	GCANNNNNTGC	2 cut(s)	694, 1736
BstBAI	YACGTR	1 cut(s)	2468
BstC8I	GCNNGC	6 cut(s)	344, 704, 1108, 2139, 2661, 3501
BstDSI	CCRYGG	2 cut(s)	274, 1998
BstENI	CCTNNNNNAGG	1 cut(s)	3560
BstFNI	CGCG	3 cut(s)	45, 455, 996
BstH2I	RGCGCY	2 cut(s)	3086, 3436
BstHHI	GCGC	7 cut(s)	392, 455, 758, 3085, 3345, 3435, 3485
BstNI	CCWGG	8 cut(s)	142, 164, 169, 408, 934, 1307, 1972, 3234
BstNSI	RCATGY	3 cut(s)	272, 1138, 2454
BstSFI	CTRYAG	7 cut(s)	260, 796, 1422, 1459, 2329, 2911, 3653
BstSLI	GKGCMC	2 cut(s)	1786, 3911
BstUI	CGCG	3 cut(s)	45, 455, 996
BstV1I	GCAGC	8 cut(s)	246, 700, 2389, 2416, 2483, 2574, 3286, 3832
BstV2I	GAAGAC	3 cut(s)	618, 677, 1347
BstZ17I	GTATAC	1 cut(s)	211
BsuI	GTATCC	3 cut(s)	1438, 2014, 2517
BtgI	CCRYGG	2 cut(s)	274, 1998
BtrI	CACGTC	1 cut(s)	1775
BtsIMutI	CAGTG	5 cut(s)	317, 926, 2200, 2298, 3749
BtuMI	TCGCGA	1 cut(s)	996
BveI	ACCTGC	5 cut(s)	220, 1129, 1837, 2560, 3299
Cac8I	GCNNGC	6 cut(s)	344, 704, 1108, 2139, 2661, 3501
CaiI	CAGNNNCTG	2 cut(s)	3215, 3661
CciI	TCATGA	4 cut(s)	1057, 2074, 3127, 3172
CfoI	GCGC	7 cut(s)	392, 455, 758, 3085, 3345, 3435, 3485
Cfr10I	RCCGGY	2 cut(s)	125, 969
CseI	GACGC	2 cut(s)	612, 3263
CsiI	ACCWGGT	1 cut(s)	932
Csp6I	GTAC	6 cut(s)	539, 2465, 2552, 2916, 3610, 3674
CspCI	CAANNNNNGTGG	2 cut(s)	1980, 2015
CviQI	GTAC	6 cut(s)	539, 2465, 2552, 2916, 3610, 3674
DraI	TTTAAA	1 cut(s)	3099
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	5 cut(s)	60, 165, 1108, 1995, 2812
Eam1104I	CTCTTC	3 cut(s)	1665, 3063, 3174
EarI	CTCTTC	3 cut(s)	1665, 3063, 3174
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	3490
Eco130I	CCWWGG	5 cut(s)	49, 274, 889, 920, 2531
Eco24I	GRGCYC	4 cut(s)	148, 2281, 3492, 3911
Eco31I	GGTCTC	2 cut(s)	1059, 3628
Eco32I	GATATC	1 cut(s)	2845
Eco47I	GGWCC	7 cut(s)	24, 1192, 1659, 2422, 2987, 3230, 3522
Eco47III	AGCGCT	1 cut(s)	3084
Eco53kI	GAGCTC	1 cut(s)	3490
Eco57I	CTGAAG	9 cut(s)	1746, 2340, 2382, 2685, 3144, 3237, 3468, 3648, 3729
Eco88I	CYCGRG	3 cut(s)	558, 838, 2675
EcoICRI	GAGCTC	1 cut(s)	3490
EcoNI	CCTNNNNNAGG	1 cut(s)	3560
EcoO109I	RGGNCCY	3 cut(s)	2987, 3907, 3908
EcoRII	CCWGG	8 cut(s)	140, 162, 167, 406, 932, 1305, 1970, 3232
EcoRV	GATATC	1 cut(s)	2845
EcoT14I	CCWWGG	5 cut(s)	49, 274, 889, 920, 2531
EcoT22I	ATGCAT	4 cut(s)	1858, 2452, 2976, 3619
EcoT38I	GRGCYC	4 cut(s)	148, 2281, 3492, 3911
ErhI	CCWWGG	5 cut(s)	49, 274, 889, 920, 2531
FalI	AAGNNNNNCTT	2 cut(s)	3123, 3155
FaqI	GGGAC	6 cut(s)	92, 325, 746, 2324, 3000, 3238
FauI	CCCGC	2 cut(s)	142, 1873
FauNDI	CATATG	1 cut(s)	2683
FbaI	TGATCA	2 cut(s)	1311, 3586
FblI	GTMKAC	2 cut(s)	210, 1143
FriOI	GRGCYC	4 cut(s)	148, 2281, 3492, 3911
FspBI	CTAG	9 cut(s)	1172, 1496, 1710, 1719, 2091, 2217, 2651, 2771, 3872
GlaI	GCGC	7 cut(s)	391, 454, 757, 3084, 3344, 3434, 3484
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	6 cut(s)	1272, 2069, 2176, 2194, 2402, 3592
HaeII	RGCGCY	2 cut(s)	3086, 3436
HgaI	GACGC	2 cut(s)	612, 3263
HhaI	GCGC	7 cut(s)	392, 455, 758, 3085, 3345, 3435, 3485
Hin6I	GCGC	7 cut(s)	390, 453, 756, 3083, 3343, 3433, 3483
HinP1I	GCGC	7 cut(s)	390, 453, 756, 3083, 3343, 3433, 3483
HindIII	AAGCTT	2 cut(s)	2135, 2867
Hpy166II	GTNNAC	6 cut(s)	211, 1144, 2198, 2438, 3605, 3881
Hpy8I	GTNNAC	6 cut(s)	211, 1144, 2198, 2438, 3605, 3881
Hpy99I	CGWCG	3 cut(s)	218, 2286, 2878
HpyCH4IV	ACGT	3 cut(s)	213, 1774, 2467
HpySE526I	ACGT	3 cut(s)	213, 1774, 2467
HspAI	GCGC	7 cut(s)	390, 453, 756, 3083, 3343, 3433, 3483
Kpn2I	TCCGGA	1 cut(s)	1385
Ksp22I	TGATCA	2 cut(s)	1311, 3586
Lsp1109I	GCAGC	8 cut(s)	246, 700, 2389, 2416, 2483, 2574, 3286, 3832
MabI	ACCWGGT	1 cut(s)	932
MaeI	CTAG	9 cut(s)	1172, 1496, 1710, 1719, 2091, 2217, 2651, 2771, 3872
MaeII	ACGT	3 cut(s)	213, 1774, 2467
MaeIII	GTNAC	9 cut(s)	239, 896, 924, 1079, 2695, 2717, 2936, 3005, 3698
MbiI	CCGCTC	2 cut(s)	87, 2190
MfeI	CAATTG	2 cut(s)	1935, 3303
MhlI	GDGCHC	7 cut(s)	148, 1786, 2245, 2281, 3492, 3747, 3911
MlsI	TGGCCA	3 cut(s)	167, 1110, 2814
MluNI	TGGCCA	3 cut(s)	167, 1110, 2814
MlyI	GAGTC	2 cut(s)	2193, 2768
MmeI	TCCRAC	4 cut(s)	196, 2031, 2264, 3072
Mox20I	TGGCCA	3 cut(s)	167, 1110, 2814
Mph1103I	ATGCAT	4 cut(s)	1858, 2452, 2976, 3619
MroI	TCCGGA	1 cut(s)	1385
MroXI	GAANNNNTTC	2 cut(s)	1381, 3072
MscI	TGGCCA	3 cut(s)	167, 1110, 2814
MseI	TTAA	7 cut(s)	174, 738, 1232, 2525, 2597, 2943, 3098
MslI	CAYNNNNRTG	6 cut(s)	273, 279, 322, 1839, 2518, 3815
Msp20I	TGGCCA	3 cut(s)	167, 1110, 2814
MspA1I	CMGCKG	1 cut(s)	2380
MunI	CAATTG	2 cut(s)	1935, 3303
Mva1269I	GAATGC	1 cut(s)	2912
MvaI	CCWGG	8 cut(s)	142, 164, 169, 408, 934, 1307, 1972, 3234
MvnI	CGCG	3 cut(s)	45, 455, 996
NciI	CCSGG	4 cut(s)	12, 95, 436, 1196
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	2683
NlaIV	GGNNCC	7 cut(s)	147, 1660, 2988, 3365, 3545, 3771, 3909
NmeAIII	GCCGAG	2 cut(s)	506, 3739
NmuCI	GTSAC	7 cut(s)	239, 896, 924, 1079, 2695, 2717, 2936
NruI	TCGCGA	1 cut(s)	996
NsiI	ATGCAT	4 cut(s)	1858, 2452, 2976, 3619
NspI	RCATGY	3 cut(s)	272, 1138, 2454
OliI	CACNNNNGTG	2 cut(s)	322, 2518
PaeR7I	CTCGAG	1 cut(s)	2675
PagI	TCATGA	4 cut(s)	1057, 2074, 3127, 3172
PasI	CCCWGGG	2 cut(s)	141, 407
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	2912
PdmI	GAANNNNTTC	2 cut(s)	1381, 3072
PfoI	TCCNGGA	1 cut(s)	10
PleI	GAGTC	2 cut(s)	2193, 2768
PpsI	GAGTC	2 cut(s)	2193, 2768
Ppu21I	YACGTR	1 cut(s)	2468
PpuMI	RGGWCCY	1 cut(s)	2987
PshBI	ATTAAT	1 cut(s)	2943
Psp124BI	GAGCTC	1 cut(s)	3492
Psp5II	RGGWCCY	1 cut(s)	2987
Psp6I	CCWGG	8 cut(s)	140, 162, 167, 406, 932, 1305, 1970, 3232
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	8 cut(s)	140, 162, 167, 406, 932, 1305, 1970, 3232
PspN4I	GGNNCC	7 cut(s)	147, 1660, 2988, 3365, 3545, 3771, 3909
PspOMI	GGGCCC	1 cut(s)	3907
PspPPI	RGGWCCY	1 cut(s)	2987
PspXI	VCTCGAGB	1 cut(s)	2675
PstI	CTGCAG	2 cut(s)	264, 3657
PstNI	CAGNNNCTG	2 cut(s)	3215, 3661
PvuII	CAGCTG	1 cut(s)	2380
RruI	TCGCGA	1 cut(s)	996
RsaI	GTAC	6 cut(s)	540, 2466, 2553, 2917, 3611, 3675
RsaNI	GTAC	6 cut(s)	539, 2465, 2552, 2916, 3610, 3674
RseI	CAYNNNNRTG	6 cut(s)	273, 279, 322, 1839, 2518, 3815
SacI	GAGCTC	1 cut(s)	3492
SaqAI	TTAA	7 cut(s)	174, 738, 1232, 2525, 2597, 2943, 3098
ScaI	AGTACT	1 cut(s)	2917
SchI	GAGTC	2 cut(s)	2193, 2768
SduI	GDGCHC	7 cut(s)	148, 1786, 2245, 2281, 3492, 3747, 3911
SexAI	ACCWGGT	1 cut(s)	932
SfcI	CTRYAG	7 cut(s)	260, 796, 1422, 1459, 2329, 2911, 3653
Sfr274I	CTCGAG	1 cut(s)	2675
SinI	GGWCC	7 cut(s)	24, 1192, 1659, 2422, 2987, 3230, 3522
SlaI	CTCGAG	1 cut(s)	2675
SmiMI	CAYNNNNRTG	6 cut(s)	273, 279, 322, 1839, 2518, 3815
SmlI	CTYRAG	4 cut(s)	398, 1272, 2675, 3189
SmoI	CTYRAG	4 cut(s)	398, 1272, 2675, 3189
SspI	AATATT	1 cut(s)	3093
SspMI	CTAG	9 cut(s)	1172, 1496, 1710, 1719, 2091, 2217, 2651, 2771, 3872
SstI	GAGCTC	1 cut(s)	3492
StyI	CCWWGG	5 cut(s)	49, 274, 889, 920, 2531
TaiI	ACGT	3 cut(s)	216, 1777, 2470
TaqI	TCGA	2 cut(s)	1517, 2676
TaqII	GACCGA	1 cut(s)	3610
TatI	WGTACW	2 cut(s)	538, 2915
TauI	GCSGC	4 cut(s)	45, 87, 2902, 3584
Tru1I	TTAA	7 cut(s)	174, 738, 1232, 2525, 2597, 2943, 3098
Tru9I	TTAA	7 cut(s)	174, 738, 1232, 2525, 2597, 2943, 3098
TscAI	CASTG	5 cut(s)	324, 933, 2200, 2298, 3756
TseFI	GTSAC	7 cut(s)	239, 896, 924, 1079, 2695, 2717, 2936
TseI	GCWGC	8 cut(s)	259, 688, 2377, 2404, 2471, 2587, 3299, 3820
Tsp45I	GTSAC	7 cut(s)	239, 896, 924, 1079, 2695, 2717, 2936
TspGWI	ACGGA	4 cut(s)	94, 148, 2033, 2142
TspRI	CASTG	5 cut(s)	324, 933, 2200, 2298, 3756
VpaK11BI	GGWCC	7 cut(s)	24, 1192, 1659, 2422, 2987, 3230, 3522
VspI	ATTAAT	1 cut(s)	2943
XagI	CCTNNNNNAGG	1 cut(s)	3560
XapI	RAATTY	2 cut(s)	2042, 2821
XbaI	TCTAGA	3 cut(s)	1495, 2090, 2650
XceI	RCATGY	3 cut(s)	272, 1138, 2454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3117
XhoI	CTCGAG	1 cut(s)	2675
XmiI	GTMKAC	2 cut(s)	210, 1143
XmnI	GAANNNNTTC	2 cut(s)	1381, 3072
XspI	CTAG	9 cut(s)	1172, 1496, 1710, 1719, 2091, 2217, 2651, 2771, 3872
ZrmI	AGTACT	1 cut(s)	2917
Zsp2I	ATGCAT	4 cut(s)	1858, 2452, 2976, 3619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.