Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Forward (+)

74168242 .. 74175218

Gene Structure 6977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG532500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

ATGTTCTCTCCCGGAACCAAGCGGCCCAACGCCAACCCTCGCCGCGACCAAGGCTCTCCGGCCACTCCTCTCACCGAGATCCGGCGATCCTCTCCGGACAATTCTGTCCCCAATCGCCCCACCACCGGCACTCCGGCTCCCTGGGCTCCTCGCCTTTCCGTCCTCGCCAGGGTTCTACCGGGTAATCAAAATGAAAAAGGGGATGAAATTAAGCCTGTATATGTTGGAGAGTTTCCGCAAGTTGTTCGTGATGAACAGGCTAGTATGCTCCAGAGGCATGTTCATGGCGACGCTTCAGTATCCGGTGGAATGGAGAGAGGGACATTGGCGTGGATTATATGTGGAGGCAGACTCTTTGTGTGGAGTTATTTGTCTCCTGGTTGTTCGACGAGTTGCACTGTTCTTGAGATCCCTGGAAGCGTTTTCGAAGGTGGGGAGGCTGGGAGGACCGGTGGGAACTCGTGGTTGCTCTGCGTTGTTAATTGGGATAACACATCTACAAGAACAAAGAAAGTTGTGAAACAATGTAGCTCTGTTGGTATTGTACTGTGTAACAAAAAGACCCGCGCTGCTGTGTATTGGCCTGACATATACGGTGAAGGGAGAACTGATCCGGTTGTTAGTGTTGCATCTTCTGATGAATTGGAGGTGGCGTCCTCACCCATTGATAGGAAGACTCCCCAAAGGAGGCAGCAGTTACTTAGCAGGCAAGGGAGTAGTTTGAGTGGATCTTGTACTTTTAACTCTCTGATTGCGTGTGCAGTCCCTGATTCCCGTAATGAGTGTGTTGCAGTTGCCTGTAGTTCAAATGGTGAGCTATGGCAGTTTCATTGTTGTCCATCTGGTGTTAGCCGTAAGAAAGTGTATCAACACAATCAGAACTCATCCCCCCAAGGGGGTTACAGTGGCAGCAAAGGCTATCCAAGGTCATTGACCTGGTGCTTTCCAAATCTTCATGTGCAGGAATCCAGCCGGCAATTTGTTGTTCTGACAGATCGTGAGATGCAATGTTTTAGCATTGAACTTTCTCCTGATTATGTTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTCGGATGGTGATCGGGGTATCAAGAAGGATTTGGCCGGGCAGAAGCGAATCTGGCCTCTTGACATGCAGGTAGACTATCATGGTAAAGTGACTACCATTCTAGTTGCTACCTTCTGCTTGGACCGGGGTAGTAGTTCAAGCTACGTGCAGTATTCTCTTTTGACCATGCAGTTTAAATCTGGAGGTAGTATAGCACCTACTCAAGAAACAGTTTTAGAGAGAAAAGATCCTATCCAGGTGATCATTCCAAAAGCAAGAGTAGAAGATGAAGACTTCTTATTCTCCATGAGACTGCGGGTAGGGGGAAAGCCTTCCGGATCAGCAATTATACTTTCTGGTGATGGAACCGCTACAGTATCCCATTATTATAGAACGACTACACGGCTTTATAAATTTGACCTACCTTATGATGCTGGAAAGGTTCTAGATGCTTCAATTCTTCCCTCTACAGATGATGGTGAAGAAGGGGCATGGGTTGTTCTAACTGAGAAGGCAGGAATATGGGCAATACCCGAGAAGGCTGTTATGATTGGTGGAGTTGAACCTCCTGAGCGAAGTTTATCACGTAAAGGTAGCTCAAATGAAGGATCCGCACAAGAAGAGAGAAAGAACCTTACATTTGCAGGGAATCTTGCTCCTAGAAGGGCTAGTTCTGAAGCATGGGATGCTGGAGATAGACAAAGGGTTATGCCTGTAATTGCACGTCAAACTGCCCAAGATGAAGAATCAGAAACTTTACTGAGCCAGCTTTTCCATGATTATCATTTACATGGGCAGGTTGATGCATCACTTGAAAAGCTAAAAATTGCAGGGGCATTTGAAAGGGATAGAGAGACAAATGTTTTTGCACGACTGAGCAAATCAATTGTTGATACCTTAGCTAAACATTGGACAACAACCAGAGGAGCTGAGATTTTGGCAATGGCCGTGGTATCCTCCCAACTCACGGATAAGCAACAGAAGCATACAAAATTTCTGGAGTTTCTTGCTCTATCCAAATGTCATGAGGAGCTATGTTCTAGACAGAGACATTCTTTGCAAATTATCTTGGAACACGGTGAAAAGCTTGCTGGAATGATTCAACTACGGGAATTGCAGAACATCATCAGCCAGAACCGCTCCAGTGGACTCAGCACCTCCCGTTCTAGTCCAGAAAATCAAATATCTGGTGCTCTGTGGGATCTTATTCAATTAGTTGGTGATAGAGCCCGTCGGAATACGGTGCTTCTAATGGACAGGGACAATGCTGAAGTATTCTACAGTAAAGTTTCTGATCTTCAAGAAGTGTTTTCTTGCTTAGACAAGCAGCTGGAGTATGTAATCCCTGCAGAGCAGCCATATGGGATTCAGGTCCAGAGAGCTTGTGAACTCTCAAATGCATGTGTTAGTATTGTCCGTGCAGCCATGCAATACAGAAACACACATCACTTGTGGTATCCCCCACCTGAGTGCTTAACACCCTGGTATTGCCAAGCTGTTGTACGCAATGGGATGTGGCAGGTTGCTTCCTTCATGCTGCAACTGTTAAAAGAAGCATCTCAGATTGATATGTCTGCAAAATCAGATTTATATTCTCATCTAGAACTGCTGGCTGAAGTTCTGCTTGAGGCATATACTGGTTCTGTCACCGCTAAAGTTGAACTTGGTCACGAACACAAGGGCTTATTAGATGAGTATTGGAATAGAAGGGATGCACTCCTAGACTCACTTTATCACCAAGTCAAAGATTTTGTGGAAGTTGGGCATGAGAATTTGAATGAAGGATCTGATGAGCTCAATGAAGAAATTTTTGGGAAGCTTTCTTCATGTTTGCTTCCCATGGCAAAGCGGCATGAATGCTACACTACTTTATGGAAAATATGCTGTGACATTAATGATTCTGAACTACTAAAAAATCTGATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

993

Amino Acids

110.44

Weight (kDa)

6.28

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	74 - 526	2.4e-32	Nup133 N terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1464
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	3 cut(s)	1132, 1840, 2563
AccBSI	CCGCTC	1 cut(s)	2193
AccI	GTMKAC	1 cut(s)	1146
AccII	CGCG	2 cut(s)	45, 567
AccIII	TCCGGA	2 cut(s)	94, 1388
AcoI	YGGCCR	3 cut(s)	60, 1107, 1998
AcsI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
AcuI	CTGAAG	4 cut(s)	279, 1749, 2343, 2688
AcyI	GRCGYC	1 cut(s)	653
AfaI	GTAC	3 cut(s)	546, 736, 2556
AfiI	CCNNNNNNNGG	9 cut(s)	81, 125, 169, 669, 687, 894, 895, 896, 2020
AgeI	ACCGGT	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	1778
AjnI	CCWGG	7 cut(s)	140, 167, 376, 412, 935, 1308, 2534
AjuI	GAANNNNNNNTTGG	2 cut(s)	2847, 2879
AleI	CACNNNNGTG	1 cut(s)	2521
Alw21I	GWGCWC	2 cut(s)	2248, 2850
Alw26I	GTCTC	5 cut(s)	378, 1062, 1357, 1901, 2095
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	1586
Aor13HI	TCCGGA	2 cut(s)	94, 1388
AoxI	GGCC	6 cut(s)	23, 60, 581, 1107, 1127, 1998
ApeKI	GCWGC	7 cut(s)	569, 691, 909, 2380, 2407, 2474, 2590
ApoI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AseI	ATTAAT	1 cut(s)	2946
AsiGI	ACCGGT	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	1384
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	4 cut(s)	24, 447, 1195, 2425
AsuC2I	CCSGG	4 cut(s)	12, 180, 1111, 1199
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	1586
AvaII	GGWCC	3 cut(s)	447, 1195, 2425
BamHI	GGATCC	1 cut(s)	1661
BanII	GRGCYC	3 cut(s)	148, 2284, 2850
BauI	CACGAG	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	680, 1350
Bbv12I	GWGCWC	2 cut(s)	2248, 2850
BbvI	GCAGC	7 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577
BccI	CCATC	5 cut(s)	847, 1073, 1409, 1523, 2968
BceAI	ACGGC	3 cut(s)	837, 1472, 1985
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	7 cut(s)	142, 169, 378, 414, 937, 1310, 2536
BciVI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
BclI	TGATCA	1 cut(s)	1314
BcnI	CCSGG	4 cut(s)	12, 180, 1111, 1199
BcoDI	GTCTC	5 cut(s)	378, 1062, 1357, 1901, 2095
BfaI	CTAG	9 cut(s)	261, 1175, 1499, 1713, 1722, 2094, 2220, 2654, 2774
BfmI	CTRYAG	5 cut(s)	799, 1425, 1521, 2332, 2400
BfuAI	ACCTGC	3 cut(s)	1132, 1840, 2563
BfuI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
Bme18I	GGWCC	3 cut(s)	447, 1195, 2425
BmeT110I	CYCGRG	1 cut(s)	1586
BmgBI	CACGTC	1 cut(s)	1778
BmgT120I	GGNCC	4 cut(s)	24, 447, 1195, 2425
BmiI	GGNNCC	5 cut(s)	16, 138, 147, 1420, 1663
BmsI	GCATC	9 cut(s)	638, 993, 1474, 1492, 1729, 1846, 1868, 2618, 2755
BpiI	GAAGAC	2 cut(s)	680, 1350
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	6 cut(s)	254, 1275, 1764, 2072, 2179, 2405
Bpu10I	CCTNAGC	2 cut(s)	1623, 1951
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	3 cut(s)	425, 1260, 2699
BpuMI	CCSGG	4 cut(s)	12, 180, 1111, 1199
BsaAI	YACGTR	2 cut(s)	1219, 1640
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaHI	GRCGYC	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	1062
BsaWI	WCCGGW	5 cut(s)	94, 302, 449, 613, 1388
BsaXI	ACNNNNNCTCC	8 cut(s)	115, 121, 145, 151, 436, 466, 638, 668
Bsc4I	CCNNNNNNNGG	9 cut(s)	81, 125, 169, 669, 687, 894, 895, 896, 2020
Bse118I	RCCGGY	3 cut(s)	125, 449, 972
Bse1I	ACTGG	2 cut(s)	2196, 2695
Bse3DI	GCAATG	3 cut(s)	1013, 2001, 2566
Bse8I	GATNNNNATC	1 cut(s)	1083
BseAI	TCCGGA	2 cut(s)	94, 1388
BseBI	CCWGG	7 cut(s)	142, 169, 378, 414, 937, 1310, 2536
BseGI	GGATG	6 cut(s)	208, 884, 1084, 1744, 2571, 2770
BseJI	GATNNNNATC	1 cut(s)	1083
BseLI	CCNNNNNNNGG	9 cut(s)	81, 125, 169, 669, 687, 894, 895, 896, 2020
BseMI	GCAATG	3 cut(s)	1013, 2001, 2566
BseMII	CTCAG	8 cut(s)	1551, 1614, 1805, 1919, 1974, 2218, 2511, 2627
BseNI	ACTGG	2 cut(s)	2196, 2695
BseRI	GAGGAG	4 cut(s)	57, 138, 1992, 2096
BseXI	GCAGC	7 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	4 cut(s)	780, 980, 1241, 2493
Bsh1236I	CGCG	2 cut(s)	45, 567
BshFI	GGCC	6 cut(s)	25, 62, 583, 1109, 1129, 2000
BshTI	ACCGGT	1 cut(s)	449
BsiHKAI	GWGCWC	2 cut(s)	2248, 2850
BsiHKCI	CYCGRG	1 cut(s)	1586
BslFI	GGGAC	4 cut(s)	92, 334, 749, 2327
BslI	CCNNNNNNNGG	9 cut(s)	81, 125, 169, 669, 687, 894, 895, 896, 2020
BsmAI	GTCTC	5 cut(s)	378, 1062, 1357, 1901, 2095
BsmFI	GGGAC	4 cut(s)	92, 334, 749, 2327
BsmI	GAATGC	1 cut(s)	2915
BsnI	GGCC	6 cut(s)	25, 62, 583, 1109, 1129, 2000
Bso31I	GGTCTC	1 cut(s)	1062
BsoBI	CYCGRG	1 cut(s)	1586
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	4 cut(s)	148, 2248, 2284, 2850
Bsp13I	TCCGGA	2 cut(s)	94, 1388
Bsp19I	CCATGG	1 cut(s)	2892
BspANI	GGCC	6 cut(s)	25, 62, 583, 1109, 1129, 2000
BspCNI	CTCAG	8 cut(s)	1552, 1615, 1806, 1920, 1975, 2217, 2512, 2626
BspEI	TCCGGA	2 cut(s)	94, 1388
BspFNI	CGCG	2 cut(s)	45, 567
BspHI	TCATGA	2 cut(s)	1060, 2077
BspLI	GGNNCC	5 cut(s)	16, 138, 147, 1420, 1663
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	3 cut(s)	1132, 1840, 2563
BspT104I	TTCGAA	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	1062
BsrBI	CCGCTC	1 cut(s)	2193
BsrDI	GCAATG	3 cut(s)	1013, 2001, 2566
BsrFI	RCCGGY	3 cut(s)	125, 449, 972
BsrI	ACTGG	2 cut(s)	2196, 2695
BssAI	RCCGGY	3 cut(s)	125, 449, 972
BssNI	GRCGYC	1 cut(s)	653
BssSI	CACGAG	1 cut(s)	460
BssT1I	CCWWGG	4 cut(s)	49, 892, 923, 2892
Bst2BI	CACGAG	1 cut(s)	460
Bst2UI	CCWGG	7 cut(s)	142, 169, 378, 414, 937, 1310, 2536
Bst6I	CTCTTC	1 cut(s)	1668
BstACI	GRCGYC	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	1739
BstBAI	YACGTR	2 cut(s)	1219, 1640
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	5 cut(s)	707, 974, 1820, 2142, 2664
BstDSI	CCRYGG	2 cut(s)	2001, 2892
BstF5I	GGATG	6 cut(s)	208, 884, 1084, 1744, 2571, 2770
BstFNI	CGCG	2 cut(s)	45, 567
BstHHI	GCGC	1 cut(s)	569
BstMAI	GTCTC	5 cut(s)	378, 1062, 1357, 1901, 2095
BstMWI	GCNNNNNNNGC	8 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190
BstNI	CCWGG	7 cut(s)	142, 169, 378, 414, 937, 1310, 2536
BstNSI	RCATGY	3 cut(s)	281, 1141, 2457
BstSFI	CTRYAG	5 cut(s)	799, 1425, 1521, 2332, 2400
BstUI	CGCG	2 cut(s)	45, 567
BstV1I	GCAGC	7 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577
BstV2I	GAAGAC	2 cut(s)	680, 1350
BstX2I	RGATCY	7 cut(s)	78, 408, 728, 1300, 1661, 2254, 2837
BstYI	RGATCY	7 cut(s)	78, 408, 728, 1300, 1661, 2254, 2837
BsuI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
BsuRI	GGCC	6 cut(s)	25, 62, 583, 1109, 1129, 2000
BtgI	CCRYGG	2 cut(s)	2001, 2892
BtrI	CACGTC	1 cut(s)	1778
BtsCI	GGATG	6 cut(s)	208, 884, 1084, 1744, 2571, 2770
BtsIMutI	CAGTG	3 cut(s)	396, 910, 2203
BveI	ACCTGC	3 cut(s)	1132, 1840, 2563
Cac8I	GCNNGC	5 cut(s)	707, 974, 1820, 2142, 2664
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	2 cut(s)	1060, 2077
CfoI	GCGC	1 cut(s)	569
Cfr10I	RCCGGY	3 cut(s)	125, 449, 972
Cfr13I	GGNCC	4 cut(s)	24, 447, 1195, 2425
CseI	GACGC	2 cut(s)	299, 642
CsiI	ACCWGGT	1 cut(s)	935
Csp6I	GTAC	3 cut(s)	545, 735, 2555
CspAI	ACCGGT	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	1983, 2018
CviQI	GTAC	3 cut(s)	545, 735, 2555
DraI	TTTAAA	1 cut(s)	1249
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	3 cut(s)	60, 1107, 1998
Eam1104I	CTCTTC	1 cut(s)	1668
EarI	CTCTTC	1 cut(s)	1668
Ecl136II	GAGCTC	1 cut(s)	2848
Eco130I	CCWWGG	4 cut(s)	49, 892, 923, 2892
Eco24I	GRGCYC	3 cut(s)	148, 2284, 2850
Eco31I	GGTCTC	1 cut(s)	1062
Eco47I	GGWCC	3 cut(s)	447, 1195, 2425
Eco53kI	GAGCTC	1 cut(s)	2848
Eco57I	CTGAAG	4 cut(s)	279, 1749, 2343, 2688
Eco88I	CYCGRG	1 cut(s)	1586
EcoICRI	GAGCTC	1 cut(s)	2848
EcoRII	CCWGG	7 cut(s)	140, 167, 376, 412, 935, 1308, 2534
EcoT14I	CCWWGG	4 cut(s)	49, 892, 923, 2892
EcoT22I	ATGCAT	2 cut(s)	1861, 2455
EcoT38I	GRGCYC	3 cut(s)	148, 2284, 2850
ErhI	CCWWGG	4 cut(s)	49, 892, 923, 2892
FalI	AAGNNNNNCTT	4 cut(s)	2661, 2693, 2700, 2732
FaqI	GGGAC	4 cut(s)	92, 334, 749, 2327
FauI	CCCGC	2 cut(s)	572, 1362
FauNDI	CATATG	1 cut(s)	2413
FbaI	TGATCA	1 cut(s)	1314
FblI	GTMKAC	1 cut(s)	1146
FokI	GGATG	6 cut(s)	215, 871, 1091, 1751, 2578, 2777
FriOI	GRGCYC	3 cut(s)	148, 2284, 2850
FspBI	CTAG	9 cut(s)	261, 1175, 1499, 1713, 1722, 2094, 2220, 2654, 2774
GlaI	GCGC	1 cut(s)	568
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	6 cut(s)	254, 1275, 1764, 2072, 2179, 2405
HaeIII	GGCC	6 cut(s)	25, 62, 583, 1109, 1129, 2000
HgaI	GACGC	2 cut(s)	299, 642
HhaI	GCGC	1 cut(s)	569
Hin1I	GRCGYC	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HindIII	AAGCTT	2 cut(s)	2138, 2870
Hpy166II	GTNNAC	3 cut(s)	1147, 2201, 2441
Hpy8I	GTNNAC	3 cut(s)	1147, 2201, 2441
Hpy99I	CGWCG	3 cut(s)	293, 391, 2289
HpyCH4IV	ACGT	3 cut(s)	1218, 1639, 1777
HpyF10VI	GCNNNNNNNGC	8 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190
HpySE526I	ACGT	3 cut(s)	1218, 1639, 1777
Hsp92I	GRCGYC	1 cut(s)	653
HspAI	GCGC	1 cut(s)	567
Kpn2I	TCCGGA	2 cut(s)	94, 1388
KroI	GCCGGC	1 cut(s)	972
KroNI	GCCGGC	1 cut(s)	974
Ksp22I	TGATCA	1 cut(s)	1314
LmnI	GCTCC	7 cut(s)	142, 151, 273, 1714, 1979, 2083, 2198
Lsp1109I	GCAGC	7 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577
LweI	GCATC	9 cut(s)	638, 993, 1474, 1492, 1729, 1846, 1868, 2618, 2755
MabI	ACCWGGT	1 cut(s)	935
MaeI	CTAG	9 cut(s)	261, 1175, 1499, 1713, 1722, 2094, 2220, 2654, 2774
MaeII	ACGT	3 cut(s)	1218, 1639, 1777
MaeIII	GTNAC	7 cut(s)	551, 696, 899, 1162, 2698, 2720, 2939
MbiI	CCGCTC	1 cut(s)	2193
MfeI	CAATTG	1 cut(s)	1938
MflI	RGATCY	7 cut(s)	78, 408, 728, 1300, 1661, 2254, 2837
MhlI	GDGCHC	4 cut(s)	148, 2248, 2284, 2850
MlyI	GAGTC	4 cut(s)	345, 670, 2196, 2771
MmeI	TCCRAC	2 cut(s)	205, 2267
Mph1103I	ATGCAT	2 cut(s)	1861, 2455
MroI	TCCGGA	2 cut(s)	94, 1388
MroNI	GCCGGC	1 cut(s)	972
MroXI	GAANNNNTTC	1 cut(s)	1384
MseI	TTAA	7 cut(s)	210, 480, 741, 1248, 2528, 2600, 2946
MslI	CAYNNNNRTG	4 cut(s)	282, 328, 1842, 2521
MspA1I	CMGCKG	1 cut(s)	2383
MunI	CAATTG	1 cut(s)	1938
Mva1269I	GAATGC	1 cut(s)	2915
MvaI	CCWGG	7 cut(s)	142, 169, 378, 414, 937, 1310, 2536
MvnI	CGCG	2 cut(s)	45, 567
MwoI	GCNNNNNNNGC	8 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190
NaeI	GCCGGC	1 cut(s)	974
NciI	CCSGG	4 cut(s)	12, 180, 1111, 1199
NcoI	CCATGG	1 cut(s)	2892
NdeI	CATATG	1 cut(s)	2413
NgoMIV	GCCGGC	1 cut(s)	972
NlaIV	GGNNCC	5 cut(s)	16, 138, 147, 1420, 1663
NmuCI	GTSAC	4 cut(s)	1162, 2698, 2720, 2939
NsiI	ATGCAT	2 cut(s)	1861, 2455
NspI	RCATGY	3 cut(s)	281, 1141, 2457
NspV	TTCGAA	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	2521
PagI	TCATGA	2 cut(s)	1060, 2077
PasI	CCCWGGG	1 cut(s)	141
PctI	GAATGC	1 cut(s)	2915
PdiI	GCCGGC	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	1384
PfeI	GAWTC	8 cut(s)	770, 965, 1122, 1702, 1799, 2152, 2419, 2951
PfoI	TCCNGGA	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	449
PleI	GAGTC	4 cut(s)	345, 670, 2196, 2771
PpsI	GAGTC	4 cut(s)	345, 670, 2196, 2771
Ppu21I	YACGTR	2 cut(s)	1219, 1640
PshBI	ATTAAT	1 cut(s)	2946
PsiI	TTATAA	1 cut(s)	1464
Psp124BI	GAGCTC	1 cut(s)	2850
Psp6I	CCWGG	7 cut(s)	140, 167, 376, 412, 935, 1308, 2534
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	7 cut(s)	140, 167, 376, 412, 935, 1308, 2534
PspN4I	GGNNCC	5 cut(s)	16, 138, 147, 1420, 1663
PspPI	GGNCC	4 cut(s)	24, 447, 1195, 2425
PstI	CTGCAG	1 cut(s)	2404
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	7 cut(s)	78, 408, 728, 1300, 1661, 2254, 2837
PvuII	CAGCTG	1 cut(s)	2383
RsaI	GTAC	3 cut(s)	546, 736, 2556
RsaNI	GTAC	3 cut(s)	545, 735, 2555
RseI	CAYNNNNRTG	4 cut(s)	282, 328, 1842, 2521
SacI	GAGCTC	1 cut(s)	2850
SaqAI	TTAA	7 cut(s)	210, 480, 741, 1248, 2528, 2600, 2946
Sau96I	GGNCC	4 cut(s)	24, 447, 1195, 2425
SchI	GAGTC	4 cut(s)	345, 670, 2196, 2771
SduI	GDGCHC	4 cut(s)	148, 2248, 2284, 2850
SexAI	ACCWGGT	1 cut(s)	935
SfaNI	GCATC	9 cut(s)	638, 993, 1474, 1492, 1729, 1846, 1868, 2618, 2755
SfcI	CTRYAG	5 cut(s)	799, 1425, 1521, 2332, 2400
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	3 cut(s)	447, 1195, 2425
SmiMI	CAYNNNNRTG	4 cut(s)	282, 328, 1842, 2521
SmlI	CTYRAG	3 cut(s)	404, 1275, 2678
SmoI	CTYRAG	3 cut(s)	404, 1275, 2678
SspMI	CTAG	9 cut(s)	261, 1175, 1499, 1713, 1722, 2094, 2220, 2654, 2774
SstI	GAGCTC	1 cut(s)	2850
StyI	CCWWGG	4 cut(s)	49, 892, 923, 2892
TaiI	ACGT	3 cut(s)	1221, 1642, 1780
TaqI	TCGA	2 cut(s)	386, 426
TatI	WGTACW	2 cut(s)	544, 734
TauI	GCSGC	3 cut(s)	25, 45, 2905
TfiI	GAWTC	8 cut(s)	770, 965, 1122, 1702, 1799, 2152, 2419, 2951
Tru1I	TTAA	7 cut(s)	210, 480, 741, 1248, 2528, 2600, 2946
Tru9I	TTAA	7 cut(s)	210, 480, 741, 1248, 2528, 2600, 2946
TscAI	CASTG	3 cut(s)	403, 910, 2203
TseFI	GTSAC	4 cut(s)	1162, 2698, 2720, 2939
TseI	GCWGC	7 cut(s)	569, 691, 909, 2380, 2407, 2474, 2590
Tsp45I	GTSAC	4 cut(s)	1162, 2698, 2720, 2939
TspGWI	ACGGA	3 cut(s)	148, 2036, 2459
TspRI	CASTG	3 cut(s)	403, 910, 2203
VpaK11BI	GGWCC	3 cut(s)	447, 1195, 2425
VspI	ATTAAT	1 cut(s)	2946
XapI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
XbaI	TCTAGA	3 cut(s)	1498, 2093, 2653
XceI	RCATGY	3 cut(s)	281, 1141, 2457
XmiI	GTMKAC	1 cut(s)	1146
XmnI	GAANNNNTTC	1 cut(s)	1384
XspI	CTAG	9 cut(s)	261, 1175, 1499, 1713, 1722, 2094, 2220, 2654, 2774
Zsp2I	ATGCAT	2 cut(s)	1861, 2455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.