Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Forward (+)

69219369 .. 69226242

Gene Structure 6874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3930 bp

ATGTTCTCTCCCGGAACCAAGCGGCCCAACGCCAACCCTCGCCGCGACCAAGGCTCTCCGGCCACTCCTCTCACCGAGATCCGGCGATCCTCTCCGGACAATTCTGTCCCCAATCGCCCCACCACCGGCACTCCGGCTCCCTGGGCTCCTCGCCTTTCCGTCCTCGCCAGGGTTCTACCGGGTAATCAAAATGAAAAAGGGGATGAAATTAAGCCTGTATATGTTGGAGAGTTTCCACAAGTTGTTCGTGATGAACAGGCTAGTATGCTCCAGAGGCATGTTCATGGCGACACTTCAGTATCCGGTGGAATGGAGAGAGGGACATTGGCGTGGATTATATGTGGAGGCAGACTCTTTGTGTGGAGTTATTTGTCTCCTGGTTGTTCGACGAGTTGCACTGTTCTTGAGATCCCTGGAAGCGTTTTCGAAGGTGGGGAGGCTGGGAGGACCGGTGGGAACTCGTGGTTGCTCTGCATTGTTAATTGGGATAACACATCTACAAGAACAAAGGAAGTTGTGAAACAATGTAGCTCTGTTGGTATTGTACTGTGTAACAAAAAGACCCGCGCTGCTGTGTATTGGCCTGACATATACGGTGAAGGGAGAACTGATCCGGTTGTTAGTGTTGCATCTTCTGATGAATTGGAGGTGGCGTCCTCACCCATTGATAGGAAGACTCCCCAAAGGAGGCAGCAGTTACTTAGCAGGCAAGGGAGTAGTTTGAGTGGATCTTGTACTTTTAACTCTCTGATTGCGTGTGCAGTCCCTGATTCCCGTAATGAGTGTGTTGCAGTTGCCTGTAGTTCAAATGGTGAGCTATGGCAGTTTCATTGTTGTCCATCTGGTGTTAGCCGTAAGAAGGTGTATCAACACAATCAGACTTCATCCCCCCAAGGGGGTTACAGTGGCAGCAAAGGCTATCCAAGGTCACTGACCTGGTGCTTTCCAAATCTTCATGTGCAGGAATCCAGCCGGCAATTTGTTGTTCTGACAGATCGTGAGATGCAATGTTTTAGCATTGAACTTTCTCCTGATTATGTTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTCGGATGGTGATCGGGGTATCAAGAAGGATTTGGCCGGGCAGAAGCGAATCTGGCCTCTTGACATGCAGGTAGACTATCATGGTAAAGTGACTACCATTCTAGTTGCTACCTTCTGCTTGGACCGGGGTAGTAGTTCAAGCTACATGCAGTATTCTCTTTTGACCATGCAGTATAAATCTGGAGGAAATATAGCACCTACTCAAGAAACAGTTTTAGACAGAAAAGATCCTATCCAGGTGATCATTCCAAAAGCAAGAGTAGAAGATGAAGACTTCTTATTCTCCATGAGACTGCGGGTAGGGGGAAAGCCTTCCGGATCAGCAATTATACTTTCTGGTGATGGAACCGCTACAGTATCCCATTATTATAGAACGACTACACGGCTCTATAAATTTGACCTACCTTATGATGCTGGAAAGGTTCTAGATGCTTCAATTCTTCCCTCTACAGATGATGGTGAAGAAGGGGCATGGGTTGTTCTAACTGAGAAGGCAGGAATATGGGCAATACCCGAGAAGGCTGTTATGATTGGTGGAGTTGAACCTCCTGAGCGAAGTTTATCACGTAAAGGTAGCTCAAATGAAGGATCCGCACAAGAAGAGAGAAAGAACCTTACATTTGCAGGGAATCTTGCTCCTAGAAGGGCTAGTTCTGAAGCATGGGATGCTGGAGATAGACAAAGGGTTATGCCTGTAATTGCACGTCAAACTGCCCAAGATGAAGAATCAGAAACTTTACTGAGCCAGCTTTTCCATGATTATCATTTACATGGGCAGGTTGATGCATCACTTGAAAAGCTAAAAATTGCAGGGGCATTTGAAAGGGATAGAGAGACAAATGTTTTTGCACGACTGAGCAAATCAATTGTTGATACCTTAGCTAAACATTGGACAACAACCAGAGGAGCTGAGATTTTGGCAATGGCCGTGGTATCCTCCCAACTCACGGATAAGCAACAGAAGCATACAAAATTTCTGGAGTTTCTTGCTCTATCCAAATGTCATGAGGAGCTATGTTCTAGACAGAGACATTCTTTGCAAATTATCTTGGAACACGGTGAAAAGCTTGCTGGAATGATTCAACTACGGGAATTGCAGAACATCATCAGCCAGAACCGCTCCAGTGGACTCAGCACCTCCCGTTCTAGTCCAGAAAATCAAATATCTGGTGCTCTGTGGGATCTTATTCAATTAGTTGGTGATAGAGCCCGTCGGAATACGGTGCTTCTAATGGACAGGGACAATGCTGAAGTATTCTACAGTAAAGTTTCTGATCTTCAAGAAGTGTTTTCTTGCTTAGACAAGCAGCTGGAGTATGTAATCCCTGCAGAGCAGCCATATGGGATTCAGGTCCAGAGAGCTTGTGAACTCTCAAATGCATGTGTTAGTATTGTCCGTGCAGCCATGCAATACAGAAACACACATCACTTGTGGTATCCCCCACCTGAGTGCTTAACACCCTGGTATTGCCAAGCTGTTGTACGCAATGGGATGTGGCAGGTTGCCTCCTTCATGCTGCAACTGTTAAAAGAAGCATCTCAGATTGATATGTCTTCAAAATCAGATTTATATTCTCATCTAGAACTGCTGGCTGAAGTTCTGCTTGAGGCATATACTGGTTCTGTCACCGCTAAAGTTGAACTTGGTCACGAACACAAAGGCTTATTAGATGAGTATTGGAATAGAAGGGATGCACTCCTAGACTCACTTTATCACCAAGTCAAAGATTTTGTGGAAGTTGGGCATGAGAATTTGAATGAAGGATCTGATGAGCTCAATGAAGAAATTTTTGGGAAGCTTTCTTCATGTTTGCTTCCCATGGCAAAGCGGCATGAATGCTACACTACTTTATGGAAAATATGCTGTGACATTAATGATTCTGAACTACTAAAAAATCTGATGCATGACAGCATGGGACCTAATGGAGGGTTCAGTTACTATGTGTTCAAACAACTTTATGCGAGGAAACAATTTTCCAAACTTCTCAGGCTTGGGGAAGAGTTTCACGAAGCGCTCTCAATATTTTTAAAGTATCATCCAGATCTTCTGTGGCTTCATGAAGTGTTTCTTCATCAGTTTTCTTCAGCTTCAGACACCCTTCATGAATTAGCTCTTTCTCAAGATGAAAGCTCAATTTCAGAGCCTGAAGATGGGACTGGTCCTGGGCATCTCACTACATTACCGAAGCTGGCAGATAGAAAGCGTTTTTTGAATCTCTCAAAAATAGCTGCAATTGCAGGTAAGGATGCTGACTGTGAGATCAAAGTGAAGCGCATCGAGGCTGATTTGAAAATCCTAAAAGTGCAGGAAGAAGTAATAGAACTCCTTTCGTCTGATGAAACAAAGCAAAACCTTGACAAGCGGCTACTTCATCCAGAAGATCTTATCAAGCTGTGCCTCGAAGGTGAAAGCACAGAGATCTCATTGCGGGCTTTTGATGTTTTCGCATGGACCAGCTCCTCCTTTCGTAGGACCCATGCAAACCTCTTGGACAATTGCTGGAGAAATGCCGCTGATCAAGATGATTGGAGTAAAATGTACCAAGCATCGGTATCTGAAGGGTGGAGTGATAAGGAAACCTTGCAGAACCTGAAAGAGACGGTACTTTTTCAGGCTTCAAGTAGATGTTACGGACCTGAATCTGAGACTTTCGGAGAAGGGTTTGATGAAGTGCTCCCACTGAGACAAGAAATTGTGGAGCCTTCAACCATGAAAGATTCAGTTTCTTCTGTAGAGGCCATACTTATGCAGCACAAGGACTACTCGGAGGCTGGGAAGCTGATGCTCACTGCAATCATGCTAGGTAGTTTACAGTATGACACCATAGAGGAGGAGGGTCCTGTTCCTATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1309

Amino Acids

146.39

Weight (kDa)

5.59

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	74 - 526	7.2e-32	Nup133 N terminal like
Nucleoporin_C	PF03177	1002 - 1154	2.4e-10	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	4 cut(s)	1132, 1840, 2563, 3302
AccBSI	CCGCTC	1 cut(s)	2193
AccI	GTMKAC	1 cut(s)	1146
AccII	CGCG	2 cut(s)	45, 567
AccIII	TCCGGA	2 cut(s)	94, 1388
AcoI	YGGCCR	3 cut(s)	60, 1107, 1998
AcsI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
AcuI	CTGAAG	8 cut(s)	279, 1749, 2343, 2688, 3141, 3147, 3240, 3651
AcyI	GRCGYC	1 cut(s)	653
AfaI	GTAC	5 cut(s)	546, 736, 2556, 3614, 3678
AfeI	AGCGCT	1 cut(s)	3087
AgeI	ACCGGT	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	1778
AjnI	CCWGG	8 cut(s)	140, 167, 376, 412, 935, 1308, 2534, 3235
AjuI	GAANNNNNNNTTGG	2 cut(s)	2847, 2879
AleI	CACNNNNGTG	1 cut(s)	2521
Alw21I	GWGCWC	3 cut(s)	2248, 2850, 3750
Alw26I	GTCTC	8 cut(s)	378, 1062, 1357, 1901, 2095, 3665, 3713, 3751
AlwNI	CAGNNNCTG	3 cut(s)	767, 3218, 3664
Ama87I	CYCGRG	1 cut(s)	1586
Aor13HI	TCCGGA	2 cut(s)	94, 1388
Aor51HI	AGCGCT	1 cut(s)	3087
AoxI	GGCC	7 cut(s)	23, 60, 581, 1107, 1127, 1998, 3810
ApeKI	GCWGC	9 cut(s)	569, 691, 909, 2380, 2407, 2474, 2590, 3302, 3823
ApoI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AseI	ATTAAT	1 cut(s)	2946
AsiGI	ACCGGT	1 cut(s)	449
Asp700I	GAANNNNTTC	3 cut(s)	1384, 3075, 3138
AspLEI	GCGC	3 cut(s)	569, 3088, 3348
AsuC2I	CCSGG	4 cut(s)	12, 180, 1111, 1199
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	1586
AvaII	GGWCC	9 cut(s)	447, 1195, 2425, 2990, 3233, 3525, 3546, 3707, 3911
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BamHI	GGATCC	1 cut(s)	1661
BanII	GRGCYC	3 cut(s)	148, 2284, 2850
BauI	CACGAG	1 cut(s)	460
BbsI	GAAGAC	3 cut(s)	680, 1350, 2619
Bbv12I	GWGCWC	3 cut(s)	2248, 2850, 3750
BbvI	GCAGC	9 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577, 3289, 3835
BccI	CCATC	5 cut(s)	847, 1073, 1409, 1523, 3218
BceAI	ACGGC	3 cut(s)	837, 1472, 1985
BciT130I	CCWGG	8 cut(s)	142, 169, 378, 414, 937, 1310, 2536, 3237
BciVI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
BclI	TGATCA	2 cut(s)	1314, 3589
BcnI	CCSGG	4 cut(s)	12, 180, 1111, 1199
BcoDI	GTCTC	8 cut(s)	378, 1062, 1357, 1901, 2095, 3665, 3713, 3751
BfmI	CTRYAG	6 cut(s)	799, 1425, 1521, 2332, 2400, 3804
BfoI	RGCGCY	1 cut(s)	3089
BfuAI	ACCTGC	4 cut(s)	1132, 1840, 2563, 3302
BfuI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
BglII	AGATCT	3 cut(s)	3115, 3454, 3492
Bme18I	GGWCC	9 cut(s)	447, 1195, 2425, 2990, 3233, 3525, 3546, 3707, 3911
BmeT110I	CYCGRG	1 cut(s)	1586
BmgBI	CACGTC	1 cut(s)	1778
BmiI	GGNNCC	9 cut(s)	16, 138, 147, 1420, 1663, 2991, 3548, 3774, 3912
BpiI	GAAGAC	3 cut(s)	680, 1350, 2619
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	7 cut(s)	254, 1275, 1764, 2072, 2179, 2405, 3595
Bpu10I	CCTNAGC	2 cut(s)	1623, 1951
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	4 cut(s)	425, 1260, 2699, 3177
BpuMI	CCSGG	4 cut(s)	12, 180, 1111, 1199
BsaAI	YACGTR	1 cut(s)	1640
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaHI	GRCGYC	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	1062
BsaWI	WCCGGW	5 cut(s)	94, 302, 449, 613, 1388
BsaXI	ACNNNNNCTCC	8 cut(s)	115, 121, 145, 151, 436, 466, 638, 668
Bse118I	RCCGGY	3 cut(s)	125, 449, 972
Bse1I	ACTGG	3 cut(s)	2196, 2695, 3235
Bse3DI	GCAATG	4 cut(s)	1013, 2001, 2566, 3497
Bse8I	GATNNNNATC	1 cut(s)	1083
BseAI	TCCGGA	2 cut(s)	94, 1388
BseBI	CCWGG	8 cut(s)	142, 169, 378, 414, 937, 1310, 2536, 3237
BseGI	GGATG	9 cut(s)	208, 884, 1084, 1744, 2571, 2770, 3109, 3325, 3445
BseJI	GATNNNNATC	1 cut(s)	1083
BseMI	GCAATG	4 cut(s)	1013, 2001, 2566, 3497
BseNI	ACTGG	3 cut(s)	2196, 2695, 3235
BseRI	GAGGAG	7 cut(s)	57, 138, 1992, 2096, 3523, 3917, 3920
BseXI	GCAGC	9 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577, 3289, 3835
BseYI	CCCAGC	2 cut(s)	440, 3845
BsgI	GTGCAG	4 cut(s)	780, 980, 2493, 3398
Bsh1236I	CGCG	2 cut(s)	45, 567
BshFI	GGCC	7 cut(s)	25, 62, 583, 1109, 1129, 2000, 3812
BshTI	ACCGGT	1 cut(s)	449
BsiHKAI	GWGCWC	3 cut(s)	2248, 2850, 3750
BsiHKCI	CYCGRG	1 cut(s)	1586
BslFI	GGGAC	6 cut(s)	92, 334, 749, 2327, 3003, 3241
BsmAI	GTCTC	8 cut(s)	378, 1062, 1357, 1901, 2095, 3665, 3713, 3751
BsmBI	CGTCTC	1 cut(s)	3665
BsmFI	GGGAC	6 cut(s)	92, 334, 749, 2327, 3003, 3241
BsmI	GAATGC	1 cut(s)	2915
BsnI	GGCC	7 cut(s)	25, 62, 583, 1109, 1129, 2000, 3812
Bso31I	GGTCTC	1 cut(s)	1062
BsoBI	CYCGRG	1 cut(s)	1586
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	5 cut(s)	148, 2248, 2284, 2850, 3750
Bsp13I	TCCGGA	2 cut(s)	94, 1388
Bsp19I	CCATGG	1 cut(s)	2892
BspANI	GGCC	7 cut(s)	25, 62, 583, 1109, 1129, 2000, 3812
BspEI	TCCGGA	2 cut(s)	94, 1388
BspFNI	CGCG	2 cut(s)	45, 567
BspHI	TCATGA	4 cut(s)	1060, 2077, 3130, 3175
BspLI	GGNNCC	9 cut(s)	16, 138, 147, 1420, 1663, 2991, 3548, 3774, 3912
BspMAI	CTGCAG	1 cut(s)	2404
BspMI	ACCTGC	4 cut(s)	1132, 1840, 2563, 3302
BspT104I	TTCGAA	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	1062
BsrBI	CCGCTC	1 cut(s)	2193
BsrDI	GCAATG	4 cut(s)	1013, 2001, 2566, 3497
BsrFI	RCCGGY	3 cut(s)	125, 449, 972
BsrI	ACTGG	3 cut(s)	2196, 2695, 3235
BssAI	RCCGGY	3 cut(s)	125, 449, 972
BssNI	GRCGYC	1 cut(s)	653
BssSI	CACGAG	1 cut(s)	460
BssT1I	CCWWGG	4 cut(s)	49, 892, 923, 2892
Bst2BI	CACGAG	1 cut(s)	460
Bst2UI	CCWGG	8 cut(s)	142, 169, 378, 414, 937, 1310, 2536, 3237
Bst6I	CTCTTC	2 cut(s)	1668, 3066
BstACI	GRCGYC	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	1739
BstBAI	YACGTR	1 cut(s)	1640
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	7 cut(s)	707, 974, 1820, 2142, 2664, 3264, 3504
BstDSI	CCRYGG	2 cut(s)	2001, 2892
BstENI	CCTNNNNNAGG	2 cut(s)	2997, 3541
BstF5I	GGATG	9 cut(s)	208, 884, 1084, 1744, 2571, 2770, 3109, 3325, 3445
BstFNI	CGCG	2 cut(s)	45, 567
BstH2I	RGCGCY	1 cut(s)	3089
BstHHI	GCGC	3 cut(s)	569, 3088, 3348
BstMAI	GTCTC	8 cut(s)	378, 1062, 1357, 1901, 2095, 3665, 3713, 3751
BstMWI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190, 3308
BstNI	CCWGG	8 cut(s)	142, 169, 378, 414, 937, 1310, 2536, 3237
BstNSI	RCATGY	4 cut(s)	281, 1141, 1222, 2457
BstSFI	CTRYAG	6 cut(s)	799, 1425, 1521, 2332, 2400, 3804
BstUI	CGCG	2 cut(s)	45, 567
BstV1I	GCAGC	9 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577, 3289, 3835
BstV2I	GAAGAC	3 cut(s)	680, 1350, 2619
BsuI	GTATCC	4 cut(s)	310, 1441, 2017, 2520
BsuRI	GGCC	7 cut(s)	25, 62, 583, 1109, 1129, 2000, 3812
BtgI	CCRYGG	2 cut(s)	2001, 2892
BtrI	CACGTC	1 cut(s)	1778
BtsCI	GGATG	9 cut(s)	208, 884, 1084, 1744, 2571, 2770, 3109, 3325, 3445
BtsI	GCAGTG	1 cut(s)	3861
BtsIMutI	CAGTG	6 cut(s)	396, 910, 929, 2203, 3752, 3861
BveI	ACCTGC	4 cut(s)	1132, 1840, 2563, 3302
Cac8I	GCNNGC	7 cut(s)	707, 974, 1820, 2142, 2664, 3264, 3504
CaiI	CAGNNNCTG	3 cut(s)	767, 3218, 3664
CciI	TCATGA	4 cut(s)	1060, 2077, 3130, 3175
CfoI	GCGC	3 cut(s)	569, 3088, 3348
Cfr10I	RCCGGY	3 cut(s)	125, 449, 972
CseI	GACGC	1 cut(s)	642
CsiI	ACCWGGT	1 cut(s)	935
Csp6I	GTAC	5 cut(s)	545, 735, 2555, 3613, 3677
CspAI	ACCGGT	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	1983, 2018
CviQI	GTAC	5 cut(s)	545, 735, 2555, 3613, 3677
DraI	TTTAAA	1 cut(s)	3102
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	3 cut(s)	60, 1107, 1998
Eam1104I	CTCTTC	2 cut(s)	1668, 3066
EarI	CTCTTC	2 cut(s)	1668, 3066
Ecl136II	GAGCTC	1 cut(s)	2848
Eco130I	CCWWGG	4 cut(s)	49, 892, 923, 2892
Eco24I	GRGCYC	3 cut(s)	148, 2284, 2850
Eco31I	GGTCTC	1 cut(s)	1062
Eco47I	GGWCC	9 cut(s)	447, 1195, 2425, 2990, 3233, 3525, 3546, 3707, 3911
Eco47III	AGCGCT	1 cut(s)	3087
Eco53kI	GAGCTC	1 cut(s)	2848
Eco57I	CTGAAG	8 cut(s)	279, 1749, 2343, 2688, 3141, 3147, 3240, 3651
Eco88I	CYCGRG	1 cut(s)	1586
EcoICRI	GAGCTC	1 cut(s)	2848
EcoNI	CCTNNNNNAGG	2 cut(s)	2997, 3541
EcoO109I	RGGNCCY	3 cut(s)	2990, 3546, 3911
EcoRII	CCWGG	8 cut(s)	140, 167, 376, 412, 935, 1308, 2534, 3235
EcoT14I	CCWWGG	4 cut(s)	49, 892, 923, 2892
EcoT22I	ATGCAT	3 cut(s)	1861, 2455, 2979
EcoT38I	GRGCYC	3 cut(s)	148, 2284, 2850
ErhI	CCWWGG	4 cut(s)	49, 892, 923, 2892
Esp3I	CGTCTC	1 cut(s)	3665
FalI	AAGNNNNNCTT	8 cut(s)	2661, 2693, 2700, 2732, 3126, 3158, 3638, 3670
FaqI	GGGAC	6 cut(s)	92, 334, 749, 2327, 3003, 3241
FauI	CCCGC	3 cut(s)	572, 1362, 3495
FauNDI	CATATG	1 cut(s)	2413
FbaI	TGATCA	2 cut(s)	1314, 3589
FblI	GTMKAC	1 cut(s)	1146
FokI	GGATG	9 cut(s)	215, 871, 1091, 1751, 2578, 2777, 3096, 3332, 3432
FriOI	GRGCYC	3 cut(s)	148, 2284, 2850
GlaI	GCGC	3 cut(s)	568, 3087, 3347
GsaI	CCCAGC	2 cut(s)	444, 3849
GsuI	CTGGAG	7 cut(s)	254, 1275, 1764, 2072, 2179, 2405, 3595
HaeII	RGCGCY	1 cut(s)	3089
HaeIII	GGCC	7 cut(s)	25, 62, 583, 1109, 1129, 2000, 3812
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	3 cut(s)	569, 3088, 3348
Hin1I	GRCGYC	1 cut(s)	653
Hin6I	GCGC	3 cut(s)	567, 3086, 3346
HinP1I	GCGC	3 cut(s)	567, 3086, 3346
HindIII	AAGCTT	2 cut(s)	2138, 2870
Hpy166II	GTNNAC	4 cut(s)	1147, 2201, 2441, 3884
Hpy8I	GTNNAC	4 cut(s)	1147, 2201, 2441, 3884
Hpy99I	CGWCG	2 cut(s)	391, 2289
HpyCH4IV	ACGT	2 cut(s)	1639, 1777
HpyF10VI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190, 3308
HpySE526I	ACGT	2 cut(s)	1639, 1777
Hsp92I	GRCGYC	1 cut(s)	653
HspAI	GCGC	3 cut(s)	567, 3086, 3346
Kpn2I	TCCGGA	2 cut(s)	94, 1388
KroI	GCCGGC	1 cut(s)	972
KroNI	GCCGGC	1 cut(s)	974
Ksp22I	TGATCA	2 cut(s)	1314, 3589
Lsp1109I	GCAGC	9 cut(s)	556, 703, 921, 2392, 2419, 2486, 2577, 3289, 3835
MabI	ACCWGGT	1 cut(s)	935
MaeII	ACGT	2 cut(s)	1639, 1777
MbiI	CCGCTC	1 cut(s)	2193
MfeI	CAATTG	3 cut(s)	1938, 3306, 3568
MhlI	GDGCHC	5 cut(s)	148, 2248, 2284, 2850, 3750
MlyI	GAGTC	4 cut(s)	345, 670, 2196, 2771
MmeI	TCCRAC	2 cut(s)	205, 2267
Mph1103I	ATGCAT	3 cut(s)	1861, 2455, 2979
MroI	TCCGGA	2 cut(s)	94, 1388
MroNI	GCCGGC	1 cut(s)	972
MroXI	GAANNNNTTC	3 cut(s)	1384, 3075, 3138
MseI	TTAA	7 cut(s)	210, 480, 741, 2528, 2600, 2946, 3101
MslI	CAYNNNNRTG	5 cut(s)	282, 328, 1842, 2521, 3818
MspA1I	CMGCKG	2 cut(s)	2383, 3587
MunI	CAATTG	3 cut(s)	1938, 3306, 3568
Mva1269I	GAATGC	1 cut(s)	2915
MvaI	CCWGG	8 cut(s)	142, 169, 378, 414, 937, 1310, 2536, 3237
MvnI	CGCG	2 cut(s)	45, 567
MwoI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 915, 1126, 1739, 2035, 2190, 3308
NaeI	GCCGGC	1 cut(s)	974
NciI	CCSGG	4 cut(s)	12, 180, 1111, 1199
NcoI	CCATGG	1 cut(s)	2892
NdeI	CATATG	1 cut(s)	2413
NgoMIV	GCCGGC	1 cut(s)	972
NlaIV	GGNNCC	9 cut(s)	16, 138, 147, 1420, 1663, 2991, 3548, 3774, 3912
NmuCI	GTSAC	5 cut(s)	927, 1162, 2698, 2720, 2939
NsiI	ATGCAT	3 cut(s)	1861, 2455, 2979
NspI	RCATGY	4 cut(s)	281, 1141, 1222, 2457
NspV	TTCGAA	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	2521
PagI	TCATGA	4 cut(s)	1060, 2077, 3130, 3175
PasI	CCCWGGG	1 cut(s)	141
PctI	GAATGC	1 cut(s)	2915
PdiI	GCCGGC	1 cut(s)	974
PdmI	GAANNNNTTC	3 cut(s)	1384, 3075, 3138
PfoI	TCCNGGA	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	449
PleI	GAGTC	4 cut(s)	345, 670, 2196, 2771
PpsI	GAGTC	4 cut(s)	345, 670, 2196, 2771
Ppu21I	YACGTR	1 cut(s)	1640
PpuMI	RGGWCCY	3 cut(s)	2990, 3546, 3911
PshBI	ATTAAT	1 cut(s)	2946
Psp124BI	GAGCTC	1 cut(s)	2850
Psp5II	RGGWCCY	3 cut(s)	2990, 3546, 3911
Psp6I	CCWGG	8 cut(s)	140, 167, 376, 412, 935, 1308, 2534, 3235
PspFI	CCCAGC	2 cut(s)	440, 3845
PspGI	CCWGG	8 cut(s)	140, 167, 376, 412, 935, 1308, 2534, 3235
PspN4I	GGNNCC	9 cut(s)	16, 138, 147, 1420, 1663, 2991, 3548, 3774, 3912
PspPPI	RGGWCCY	3 cut(s)	2990, 3546, 3911
PstI	CTGCAG	1 cut(s)	2404
PstNI	CAGNNNCTG	3 cut(s)	767, 3218, 3664
PvuII	CAGCTG	1 cut(s)	2383
RsaI	GTAC	5 cut(s)	546, 736, 2556, 3614, 3678
RsaNI	GTAC	5 cut(s)	545, 735, 2555, 3613, 3677
RseI	CAYNNNNRTG	5 cut(s)	282, 328, 1842, 2521, 3818
SacI	GAGCTC	1 cut(s)	2850
SaqAI	TTAA	7 cut(s)	210, 480, 741, 2528, 2600, 2946, 3101
SchI	GAGTC	4 cut(s)	345, 670, 2196, 2771
SduI	GDGCHC	5 cut(s)	148, 2248, 2284, 2850, 3750
SexAI	ACCWGGT	1 cut(s)	935
SfcI	CTRYAG	6 cut(s)	799, 1425, 1521, 2332, 2400, 3804
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	9 cut(s)	447, 1195, 2425, 2990, 3233, 3525, 3546, 3707, 3911
SmiMI	CAYNNNNRTG	5 cut(s)	282, 328, 1842, 2521, 3818
SmlI	CTYRAG	4 cut(s)	404, 1275, 2678, 3192
SmoI	CTYRAG	4 cut(s)	404, 1275, 2678, 3192
SspI	AATATT	1 cut(s)	3096
SstI	GAGCTC	1 cut(s)	2850
StyI	CCWWGG	4 cut(s)	49, 892, 923, 2892
TaiI	ACGT	2 cut(s)	1642, 1780
TaqI	TCGA	4 cut(s)	386, 426, 3351, 3474
TatI	WGTACW	2 cut(s)	544, 734
TauI	GCSGC	5 cut(s)	25, 45, 2905, 3439, 3587
Tru1I	TTAA	7 cut(s)	210, 480, 741, 2528, 2600, 2946, 3101
Tru9I	TTAA	7 cut(s)	210, 480, 741, 2528, 2600, 2946, 3101
TscAI	CASTG	6 cut(s)	403, 910, 936, 2203, 3759, 3868
TseFI	GTSAC	5 cut(s)	927, 1162, 2698, 2720, 2939
TseI	GCWGC	9 cut(s)	569, 691, 909, 2380, 2407, 2474, 2590, 3302, 3823
Tsp45I	GTSAC	5 cut(s)	927, 1162, 2698, 2720, 2939
TspGWI	ACGGA	4 cut(s)	148, 2036, 2459, 3720
TspRI	CASTG	6 cut(s)	403, 910, 936, 2203, 3759, 3868
VpaK11BI	GGWCC	9 cut(s)	447, 1195, 2425, 2990, 3233, 3525, 3546, 3707, 3911
VspI	ATTAAT	1 cut(s)	2946
XagI	CCTNNNNNAGG	2 cut(s)	2997, 3541
XapI	RAATTY	4 cut(s)	1466, 2045, 2824, 2859
XbaI	TCTAGA	3 cut(s)	1498, 2093, 2653
XceI	RCATGY	4 cut(s)	281, 1141, 1222, 2457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3120
XmiI	GTMKAC	1 cut(s)	1146
XmnI	GAANNNNTTC	3 cut(s)	1384, 3075, 3138
Zsp2I	ATGCAT	3 cut(s)	1861, 2455, 2979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.