Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Forward (+)

67704767 .. 67711126

Gene Structure 6360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG505000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3933 bp

ATGTTCTCTCCCGGAACCAAGCGGCCCAACGCCAACCCTCGCCGCGACCAAGGCTCTCCGGCCACTCCTCTCACCGAGATCCGGCGATCCTCTCCGGACAATTCTGTCCCCAATCGCCCCACCACCGGCACTCCGGCTCCCTGGGCTCCTCGCCTTTCCGTCCTCGCCAGGGTTCTACCGGCTAATCAAAATGAAAAAGGGGATGAAATTAAGCCTGTATATGTTGGAGAGTTTCCGCAAGTTGTTCGTGATGAACAGGCTAGTATGCTCCAGAGGCATGTTCATGGCGACGCTTCGGTATCCGGTGGAATGGAGAGAGGGACATCATTGGCGTGGATTATATGCGGAGGCAGACTCTTTGTGTGGAGTTATTTGTCTCCTGGTTGTTCGACGAGTTGCACTGTTCTTGAGATCCCTGGAAGCGTTTTCGAAGGTGGGGAGGCTGGGAGGACCGGTGGGAACTCGTGGTTGCTCTGCGTTGTTAATTGGGATAACACATCTACAAGAACAAAGAAAGTTGTGAAACAATGTAGCTCTGCTGGTATTGTACTGTGTAACAAAAAGACCCGCGCTGCTGTGTATTGGCCTGACATATACGGTGAAGGGAGAACTGATCCGGTTGTTAGTGTTGCATCTTCTGATGAATTGGAGGTGGCGTCCTCACCCATTGATAGGAAGACTCCCCAAAGGAGGCAGCAGTTACTTAGCAGGCAAGGGAGTAGTTTGAGTGGATCTTGTACTTTTAACTCTCTGATTGCGTGTGCAGTCCCTGATTCCCGTAATGAGTGTGTTGCAGTTGCCTGTAGTTCAAATGGTGAGCTATGGCAGTTTCATTGTTGTCCATCTGGTGTTAGCCGTAAGAAAGTGTATCAACACAATCAGACTTCATCCCCCCAAGGGAATTACAGTGGCAGCAAAGGCTATTCAAGGTCACTGACCTGGTGCTTTCCAAATCTTCATGTGCAGGAATCCAGCCGGCAATTTGTTGTTCTGACAGATCGTGAGATGCAATGTTTTAGCATTGAACTTTCTCCTGATTATGTTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTCGGATGGTGATCGGGGTATCAAGAAGGATTTGGCCGGGCAGAAGCGAATCTGGCCTCTTGACATGCAGGTAGACTATCATGGTAAAGTGACTACCATTCTAGTTGCTACCTTCTGCTTGGACCGGGGTAGTAGTTCAAGCTACATGCAGTATTCTCTTTTGACCATGCAGTATAAATCTGGAGGTAGTATAGCACCTACTCAAGAAACAGTTTTAGAGAGAAAAGATCCTATCCAGGTGATCATTCCAAAAGCAAGAGTAGAAGATGAAGACTTCTTATTCTCCATGAGACTGCGGGTAGGGGGAAAGCCTTCCGGATCAGCAATTATACTTTCTGGTGATGGAACCGCTACAGTATCCCATTATTATAGAACGACTACACGGCTCTATAAATTTGACCTACCTTATGATGCTGGAAAGGTTCTAGATGCTTCAATTCTTCCCTCTACAGATGATGGTGAAGAAGGGGCATGGGTTGTTCTAACTGAGAAGGCAGGAATATGGGCAATACCCGAGAAGGCTGTTATGATTGGTGGAGTTGAACCTCCTGAGCGAAGTTTATCACGTAAAGGTAGCTCAAATGAAGGATCCGCACAAGAAGAGAGAAAGAACCTTACATTTGCAGGGAATCTTGCTCCTAGAAGGGCTAGTTCTGAAGCATGGGATGCTGGAGATAGACAAAGGGTTATGCCTGTAATTGCACGTCAAACTGCCCAAGATGAAGAATCAGAAACTTTACTGAGCCAGCTTTTCCATGATTATCATTTACATGGGCAGGTTGATGCATCACTTGAAAAGCTAAAAATTGCGGGGGCATTTGAAAGGGATAGAGAGACAAATGTTTTTGCACGACTGAGCAAATCAATTGTTGATACCTTAGCTAAACATTGGACAACAACCAGAGGAGCTGAGATTTTGGCAATGGCCGTGGTATCCTCCCAACTCACAGATAAGCAACAGAAGCATACAAAATTTCTGGAGTTTCTTGCTCTATCCAAATGTCATGAGGAGCTATGTTCTAGACAGAGACATTCTTTGCAAATTATCTTGGAACACGGTGAAAAGCTTGCTGGAATGATTCAACTACGGGAATTGCAGAACATCATCAGCCAGAACCGCTCCAGTGGACTCAGCACCTCCCGTTATAGTCCAGAAAATCAAATTTCTGGTGCTCTGTGGGATCTTATTCAATTAGTCGGTGATAGAGCCCGTCGGAATACGGTGCTTCTAATGGACAGGGACAATGCTGAAGTATTCTACAGTAAAGTTTCTGATCTTCAAGAAGTGTTTTCCTGCTTAGACAAGCAGCTGGAGTATGTAATCCCTGCAGAGCAGCCATATGGGATTCAGGTCCAGAGAGCTTGTGAACTCTCAAATGCATGTGTTAGTATTGTCCGTGCAGCCATGCAATACAGAAACACACACCACTTGTGGTATCCCCCACCTGAGTGCTTAACACCCTGGTATTGCCAAGCTGTTGTACGCAATGGGATGTGGCAGGTTGCTTCCTTCATGCTGCAACTGTTAAAAGAAGCATCTCAGATTGATATGTCTGCAAAATCAGATTTATATTCTCATCTAGAACTGCTGGCTGAAGTTCTGCTTGAGGCATATACTGGTTCTGTCACCGCTAAAGTTGAACTTGGTCACGAACACAAAGGCTTATTAGATGAGTATTGGAATAGAAGGGATGCACTCCTAGACTCACTTTATCACCAAGTCAAAGATTTTGTGGAAGTTGGGCATGAGAATTTGAATGAAGGATCTGATGAGCTCAATGAAGAAATTTTTGGGAAGCTTTCTTCATGTTTGCTTCCCATGGCAAAGCGGCATGAATGCTACACTGCTTTATGGAAAATATGCTGTGACATTAATGATTCTGAACTACTAAAAAATCTGATGCATGACAGCATGGGACCTAATGGAGGGTTCAGTTACTATGTGTTCAAACAACTATATGCGAGGAAACAATTTTCCAAACTTCTCAGGCTTGGGGAAGAGTTTCACGAAGCGCTCTCAATATTTTTAAAGTATCATCCAGATCTTCTGTGGCTTCATGAAGTGTTTCTTCATCAGTTTTCTTCAGCGTCAGACACCCTTCATGAATTAGCTCTTTCTCAAGAAGAAAGCTCAATTTCAGAGCCTGAAGATGGGACTGGTCCTGGGCATCTCACTACATTACCGAAGCTGGCAGATAGAAAGCGTTTTTTGAATCTCTCAAAATTAGCTGCAATTGCAGGTAAGGATGCTGACTGTGAGATCAAAGTGAAGCGCATCGAGGCTGATTTGAAAATCCTAAAAGTGCAGGAAGAAGTAATAGAACTCCTTTCTTCTGATGAAACAAAGCAAAACCTTGACAAGCGGCTACTTCATCCAGAAGATCTTATCAAGCTGTGCCTCGAAGGTGAAAGCACAGAGATCTCATTGCGGGCTTTTGATGTTTTCGCATGGACCAGCTCCTCCTTTCGTAGGACCCATGCAAACCTCTTGGACAATTGCTGGAGAAATGCCGCTGATCAAGATGATTGGAGTAAAATGTACCAAGCATCGGTATCTGAAGGGTGGAGTGATAAGGAAACCTTGCAGAACCTGAAAGAGACGGTACTTTTTCAGGCTTCAAGTAGATGTTACGGACCTGAAGCTGAGACTTTCGGAGAAGGGTTTGATGAAGTGCTCCCACTGAGACAAGAAATTGTGGAGCCTTCAACCATGAAAGATTCAGTTTCTTCTGTAGAGGCCATACTTATGCAGCACAAGGACTACTCGGAGGCTGGGAAGCTGATGCTCACTGCAATCATGCTAGGTAGTTTACAGTATGACACCATAGAGGAGGAGGGTCCTGTTCCTATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1310

Amino Acids

146.48

Weight (kDa)

5.65

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	74 - 527	7.1e-34	Nup133 N terminal like
Nucleoporin_C	PF03177	1003 - 1156	1.4e-09	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	4 cut(s)	1135, 1843, 2566, 3305
AccBSI	CCGCTC	1 cut(s)	2196
AccI	GTMKAC	1 cut(s)	1149
AccII	CGCG	2 cut(s)	45, 570
AccIII	TCCGGA	2 cut(s)	94, 1391
AcoI	YGGCCR	3 cut(s)	60, 1110, 2001
AcsI	RAATTY	5 cut(s)	1469, 2048, 2238, 2827, 2862
AcuI	CTGAAG	7 cut(s)	1752, 2346, 2691, 3144, 3243, 3654, 3735
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	5 cut(s)	549, 739, 2559, 3617, 3681
AfeI	AGCGCT	1 cut(s)	3090
AgeI	ACCGGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	1781
AjnI	CCWGG	8 cut(s)	140, 167, 379, 415, 938, 1311, 2537, 3238
AjuI	GAANNNNNNNTTGG	2 cut(s)	2850, 2882
AleI	CACNNNNGTG	1 cut(s)	2524
Alw21I	GWGCWC	3 cut(s)	2251, 2853, 3753
Alw26I	GTCTC	8 cut(s)	381, 1065, 1360, 1904, 2098, 3668, 3716, 3754
AlwNI	CAGNNNCTG	3 cut(s)	770, 3221, 3667
Ama87I	CYCGRG	1 cut(s)	1589
Aor13HI	TCCGGA	2 cut(s)	94, 1391
Aor51HI	AGCGCT	1 cut(s)	3090
AoxI	GGCC	7 cut(s)	23, 60, 584, 1110, 1130, 2001, 3813
ApeKI	GCWGC	9 cut(s)	572, 694, 912, 2383, 2410, 2477, 2593, 3305, 3826
ApoI	RAATTY	5 cut(s)	1469, 2048, 2238, 2827, 2862
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AseI	ATTAAT	1 cut(s)	2949
AsiGI	ACCGGT	1 cut(s)	452
Asp700I	GAANNNNTTC	3 cut(s)	1387, 3078, 3141
AspLEI	GCGC	3 cut(s)	572, 3091, 3351
AsuC2I	CCSGG	3 cut(s)	12, 1114, 1202
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	1589
AvaII	GGWCC	9 cut(s)	450, 1198, 2428, 2993, 3236, 3528, 3549, 3710, 3914
BamHI	GGATCC	1 cut(s)	1664
BanII	GRGCYC	3 cut(s)	148, 2287, 2853
BauI	CACGAG	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	683, 1353
Bbv12I	GWGCWC	3 cut(s)	2251, 2853, 3753
BbvI	GCAGC	9 cut(s)	559, 706, 924, 2395, 2422, 2489, 2580, 3292, 3838
BccI	CCATC	5 cut(s)	850, 1076, 1412, 1526, 3221
BceAI	ACGGC	3 cut(s)	840, 1475, 1988
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	8 cut(s)	142, 169, 381, 417, 940, 1313, 2539, 3240
BciVI	GTATCC	4 cut(s)	310, 1444, 2020, 2523
BclI	TGATCA	2 cut(s)	1317, 3592
BcnI	CCSGG	3 cut(s)	12, 1114, 1202
BcoDI	GTCTC	8 cut(s)	381, 1065, 1360, 1904, 2098, 3668, 3716, 3754
BfaI	CTAG	9 cut(s)	261, 1178, 1502, 1716, 1725, 2097, 2657, 2777, 3878
BfmI	CTRYAG	6 cut(s)	802, 1428, 1524, 2335, 2403, 3807
BfoI	RGCGCY	1 cut(s)	3092
BfuAI	ACCTGC	4 cut(s)	1135, 1843, 2566, 3305
BfuI	GTATCC	4 cut(s)	310, 1444, 2020, 2523
BglII	AGATCT	3 cut(s)	3118, 3457, 3495
Bme18I	GGWCC	9 cut(s)	450, 1198, 2428, 2993, 3236, 3528, 3549, 3710, 3914
BmeT110I	CYCGRG	1 cut(s)	1589
BmgBI	CACGTC	1 cut(s)	1781
BmiI	GGNNCC	9 cut(s)	16, 138, 147, 1423, 1666, 2994, 3551, 3777, 3915
BpiI	GAAGAC	2 cut(s)	683, 1353
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
BpmI	CTGGAG	7 cut(s)	254, 1278, 1767, 2075, 2182, 2408, 3598
Bpu10I	CCTNAGC	2 cut(s)	1626, 1954
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	4 cut(s)	428, 1263, 2702, 3180
BpuMI	CCSGG	3 cut(s)	12, 1114, 1202
BsaAI	YACGTR	1 cut(s)	1643
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaHI	GRCGYC	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	1065
BsaWI	WCCGGW	5 cut(s)	94, 302, 452, 616, 1391
BsaXI	ACNNNNNCTCC	8 cut(s)	115, 121, 145, 151, 439, 469, 641, 671
Bse118I	RCCGGY	4 cut(s)	125, 178, 452, 975
Bse1I	ACTGG	3 cut(s)	2199, 2698, 3238
Bse3DI	GCAATG	4 cut(s)	1016, 2004, 2569, 3500
Bse8I	GATNNNNATC	1 cut(s)	1086
BseAI	TCCGGA	2 cut(s)	94, 1391
BseBI	CCWGG	8 cut(s)	142, 169, 381, 417, 940, 1313, 2539, 3240
BseGI	GGATG	9 cut(s)	208, 887, 1087, 1747, 2574, 2773, 3112, 3328, 3448
BseJI	GATNNNNATC	1 cut(s)	1086
BseMI	GCAATG	4 cut(s)	1016, 2004, 2569, 3500
BseNI	ACTGG	3 cut(s)	2199, 2698, 3238
BseRI	GAGGAG	7 cut(s)	57, 138, 1995, 2099, 3526, 3920, 3923
BseXI	GCAGC	9 cut(s)	559, 706, 924, 2395, 2422, 2489, 2580, 3292, 3838
BseYI	CCCAGC	2 cut(s)	443, 3848
BsgI	GTGCAG	4 cut(s)	783, 983, 2496, 3401
Bsh1236I	CGCG	2 cut(s)	45, 570
BshFI	GGCC	7 cut(s)	25, 62, 586, 1112, 1132, 2003, 3815
BshTI	ACCGGT	1 cut(s)	452
BsiHKAI	GWGCWC	3 cut(s)	2251, 2853, 3753
BsiHKCI	CYCGRG	1 cut(s)	1589
BslFI	GGGAC	6 cut(s)	92, 334, 752, 2330, 3006, 3244
BsmAI	GTCTC	8 cut(s)	381, 1065, 1360, 1904, 2098, 3668, 3716, 3754
BsmBI	CGTCTC	1 cut(s)	3668
BsmFI	GGGAC	6 cut(s)	92, 334, 752, 2330, 3006, 3244
BsmI	GAATGC	1 cut(s)	2918
BsnI	GGCC	7 cut(s)	25, 62, 586, 1112, 1132, 2003, 3815
Bso31I	GGTCTC	1 cut(s)	1065
BsoBI	CYCGRG	1 cut(s)	1589
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	5 cut(s)	148, 2251, 2287, 2853, 3753
Bsp13I	TCCGGA	2 cut(s)	94, 1391
Bsp19I	CCATGG	1 cut(s)	2895
BspANI	GGCC	7 cut(s)	25, 62, 586, 1112, 1132, 2003, 3815
BspEI	TCCGGA	2 cut(s)	94, 1391
BspFNI	CGCG	2 cut(s)	45, 570
BspHI	TCATGA	4 cut(s)	1063, 2080, 3133, 3178
BspLI	GGNNCC	9 cut(s)	16, 138, 147, 1423, 1666, 2994, 3551, 3777, 3915
BspMAI	CTGCAG	1 cut(s)	2407
BspMI	ACCTGC	4 cut(s)	1135, 1843, 2566, 3305
BspT104I	TTCGAA	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	1065
BsrBI	CCGCTC	1 cut(s)	2196
BsrDI	GCAATG	4 cut(s)	1016, 2004, 2569, 3500
BsrFI	RCCGGY	4 cut(s)	125, 178, 452, 975
BsrI	ACTGG	3 cut(s)	2199, 2698, 3238
BssAI	RCCGGY	4 cut(s)	125, 178, 452, 975
BssNI	GRCGYC	1 cut(s)	656
BssSI	CACGAG	1 cut(s)	463
BssT1I	CCWWGG	3 cut(s)	49, 895, 2895
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	8 cut(s)	142, 169, 381, 417, 940, 1313, 2539, 3240
Bst6I	CTCTTC	2 cut(s)	1671, 3069
BstACI	GRCGYC	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	1742
BstBAI	YACGTR	1 cut(s)	1643
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	7 cut(s)	710, 977, 1823, 2145, 2667, 3267, 3507
BstDSI	CCRYGG	2 cut(s)	2004, 2895
BstENI	CCTNNNNNAGG	2 cut(s)	3000, 3544
BstF5I	GGATG	9 cut(s)	208, 887, 1087, 1747, 2574, 2773, 3112, 3328, 3448
BstFNI	CGCG	2 cut(s)	45, 570
BstH2I	RGCGCY	1 cut(s)	3092
BstHHI	GCGC	3 cut(s)	572, 3091, 3351
BstMAI	GTCTC	8 cut(s)	381, 1065, 1360, 1904, 2098, 3668, 3716, 3754
BstMWI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 918, 1129, 1742, 2038, 2193, 3311
BstNI	CCWGG	8 cut(s)	142, 169, 381, 417, 940, 1313, 2539, 3240
BstNSI	RCATGY	4 cut(s)	281, 1144, 1225, 2460
BstSFI	CTRYAG	6 cut(s)	802, 1428, 1524, 2335, 2403, 3807
BstUI	CGCG	2 cut(s)	45, 570
BstV1I	GCAGC	9 cut(s)	559, 706, 924, 2395, 2422, 2489, 2580, 3292, 3838
BstV2I	GAAGAC	2 cut(s)	683, 1353
BsuI	GTATCC	4 cut(s)	310, 1444, 2020, 2523
BsuRI	GGCC	7 cut(s)	25, 62, 586, 1112, 1132, 2003, 3815
BtgI	CCRYGG	2 cut(s)	2004, 2895
BtrI	CACGTC	1 cut(s)	1781
BtsCI	GGATG	9 cut(s)	208, 887, 1087, 1747, 2574, 2773, 3112, 3328, 3448
BtsI	GCAGTG	2 cut(s)	2919, 3864
BtsIMutI	CAGTG	7 cut(s)	399, 913, 932, 2206, 2919, 3755, 3864
BveI	ACCTGC	4 cut(s)	1135, 1843, 2566, 3305
Cac8I	GCNNGC	7 cut(s)	710, 977, 1823, 2145, 2667, 3267, 3507
CaiI	CAGNNNCTG	3 cut(s)	770, 3221, 3667
CciI	TCATGA	4 cut(s)	1063, 2080, 3133, 3178
CfoI	GCGC	3 cut(s)	572, 3091, 3351
Cfr10I	RCCGGY	4 cut(s)	125, 178, 452, 975
CseI	GACGC	3 cut(s)	299, 645, 3153
CsiI	ACCWGGT	1 cut(s)	938
Csp6I	GTAC	5 cut(s)	548, 738, 2558, 3616, 3680
CspAI	ACCGGT	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	1986, 2021
CviQI	GTAC	5 cut(s)	548, 738, 2558, 3616, 3680
DraI	TTTAAA	1 cut(s)	3105
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	3 cut(s)	60, 1110, 2001
Eam1104I	CTCTTC	2 cut(s)	1671, 3069
EarI	CTCTTC	2 cut(s)	1671, 3069
Ecl136II	GAGCTC	1 cut(s)	2851
Eco130I	CCWWGG	3 cut(s)	49, 895, 2895
Eco24I	GRGCYC	3 cut(s)	148, 2287, 2853
Eco31I	GGTCTC	1 cut(s)	1065
Eco47I	GGWCC	9 cut(s)	450, 1198, 2428, 2993, 3236, 3528, 3549, 3710, 3914
Eco47III	AGCGCT	1 cut(s)	3090
Eco53kI	GAGCTC	1 cut(s)	2851
Eco57I	CTGAAG	7 cut(s)	1752, 2346, 2691, 3144, 3243, 3654, 3735
Eco88I	CYCGRG	1 cut(s)	1589
EcoICRI	GAGCTC	1 cut(s)	2851
EcoNI	CCTNNNNNAGG	2 cut(s)	3000, 3544
EcoO109I	RGGNCCY	3 cut(s)	2993, 3549, 3914
EcoRII	CCWGG	8 cut(s)	140, 167, 379, 415, 938, 1311, 2537, 3238
EcoT14I	CCWWGG	3 cut(s)	49, 895, 2895
EcoT22I	ATGCAT	3 cut(s)	1864, 2458, 2982
EcoT38I	GRGCYC	3 cut(s)	148, 2287, 2853
ErhI	CCWWGG	3 cut(s)	49, 895, 2895
Esp3I	CGTCTC	1 cut(s)	3668
FalI	AAGNNNNNCTT	8 cut(s)	2664, 2696, 2703, 2735, 3129, 3161, 3641, 3673
FaqI	GGGAC	6 cut(s)	92, 334, 752, 2330, 3006, 3244
FauI	CCCGC	4 cut(s)	575, 1365, 1879, 3498
FauNDI	CATATG	1 cut(s)	2416
FbaI	TGATCA	2 cut(s)	1317, 3592
FblI	GTMKAC	1 cut(s)	1149
FokI	GGATG	9 cut(s)	215, 874, 1094, 1754, 2581, 2780, 3099, 3335, 3435
FriOI	GRGCYC	3 cut(s)	148, 2287, 2853
FspBI	CTAG	9 cut(s)	261, 1178, 1502, 1716, 1725, 2097, 2657, 2777, 3878
GlaI	GCGC	3 cut(s)	571, 3090, 3350
GsaI	CCCAGC	2 cut(s)	447, 3852
GsuI	CTGGAG	7 cut(s)	254, 1278, 1767, 2075, 2182, 2408, 3598
HaeII	RGCGCY	1 cut(s)	3092
HaeIII	GGCC	7 cut(s)	25, 62, 586, 1112, 1132, 2003, 3815
HgaI	GACGC	3 cut(s)	299, 645, 3153
HhaI	GCGC	3 cut(s)	572, 3091, 3351
Hin1I	GRCGYC	1 cut(s)	656
Hin6I	GCGC	3 cut(s)	570, 3089, 3349
HinP1I	GCGC	3 cut(s)	570, 3089, 3349
HindIII	AAGCTT	2 cut(s)	2141, 2873
Hpy166II	GTNNAC	4 cut(s)	1150, 2204, 2444, 3887
Hpy8I	GTNNAC	4 cut(s)	1150, 2204, 2444, 3887
Hpy99I	CGWCG	3 cut(s)	293, 394, 2292
HpyCH4IV	ACGT	2 cut(s)	1642, 1780
HpyF10VI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 918, 1129, 1742, 2038, 2193, 3311
HpySE526I	ACGT	2 cut(s)	1642, 1780
Hsp92I	GRCGYC	1 cut(s)	656
HspAI	GCGC	3 cut(s)	570, 3089, 3349
Kpn2I	TCCGGA	2 cut(s)	94, 1391
KroI	GCCGGC	1 cut(s)	975
KroNI	GCCGGC	1 cut(s)	977
Ksp22I	TGATCA	2 cut(s)	1317, 3592
Lsp1109I	GCAGC	9 cut(s)	559, 706, 924, 2395, 2422, 2489, 2580, 3292, 3838
MabI	ACCWGGT	1 cut(s)	938
MaeI	CTAG	9 cut(s)	261, 1178, 1502, 1716, 1725, 2097, 2657, 2777, 3878
MaeII	ACGT	2 cut(s)	1642, 1780
MaeIII	GTNAC	9 cut(s)	554, 699, 930, 1165, 2701, 2723, 2942, 3011, 3704
MbiI	CCGCTC	1 cut(s)	2196
MfeI	CAATTG	3 cut(s)	1941, 3309, 3571
MhlI	GDGCHC	5 cut(s)	148, 2251, 2287, 2853, 3753
MlyI	GAGTC	4 cut(s)	348, 673, 2199, 2774
MmeI	TCCRAC	2 cut(s)	205, 2270
Mph1103I	ATGCAT	3 cut(s)	1864, 2458, 2982
MroI	TCCGGA	2 cut(s)	94, 1391
MroNI	GCCGGC	1 cut(s)	975
MroXI	GAANNNNTTC	3 cut(s)	1387, 3078, 3141
MseI	TTAA	7 cut(s)	210, 483, 744, 2531, 2603, 2949, 3104
MslI	CAYNNNNRTG	5 cut(s)	282, 331, 1845, 2524, 3821
MspA1I	CMGCKG	2 cut(s)	2386, 3590
MunI	CAATTG	3 cut(s)	1941, 3309, 3571
Mva1269I	GAATGC	1 cut(s)	2918
MvaI	CCWGG	8 cut(s)	142, 169, 381, 417, 940, 1313, 2539, 3240
MvnI	CGCG	2 cut(s)	45, 570
MwoI	GCNNNNNNNGC	9 cut(s)	51, 143, 274, 918, 1129, 1742, 2038, 2193, 3311
NaeI	GCCGGC	1 cut(s)	977
NciI	CCSGG	3 cut(s)	12, 1114, 1202
NcoI	CCATGG	1 cut(s)	2895
NdeI	CATATG	1 cut(s)	2416
NgoMIV	GCCGGC	1 cut(s)	975
NlaIV	GGNNCC	9 cut(s)	16, 138, 147, 1423, 1666, 2994, 3551, 3777, 3915
NmuCI	GTSAC	5 cut(s)	930, 1165, 2701, 2723, 2942
NsiI	ATGCAT	3 cut(s)	1864, 2458, 2982
NspI	RCATGY	4 cut(s)	281, 1144, 1225, 2460
NspV	TTCGAA	1 cut(s)	429
OliI	CACNNNNGTG	1 cut(s)	2524
PagI	TCATGA	4 cut(s)	1063, 2080, 3133, 3178
PasI	CCCWGGG	1 cut(s)	141
PctI	GAATGC	1 cut(s)	2918
PdiI	GCCGGC	1 cut(s)	977
PdmI	GAANNNNTTC	3 cut(s)	1387, 3078, 3141
PfoI	TCCNGGA	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	452
PleI	GAGTC	4 cut(s)	348, 673, 2199, 2774
PpsI	GAGTC	4 cut(s)	348, 673, 2199, 2774
Ppu21I	YACGTR	1 cut(s)	1643
PpuMI	RGGWCCY	3 cut(s)	2993, 3549, 3914
PshBI	ATTAAT	1 cut(s)	2949
Psp124BI	GAGCTC	1 cut(s)	2853
Psp5II	RGGWCCY	3 cut(s)	2993, 3549, 3914
Psp6I	CCWGG	8 cut(s)	140, 167, 379, 415, 938, 1311, 2537, 3238
PspFI	CCCAGC	2 cut(s)	443, 3848
PspGI	CCWGG	8 cut(s)	140, 167, 379, 415, 938, 1311, 2537, 3238
PspN4I	GGNNCC	9 cut(s)	16, 138, 147, 1423, 1666, 2994, 3551, 3777, 3915
PspPPI	RGGWCCY	3 cut(s)	2993, 3549, 3914
PstI	CTGCAG	1 cut(s)	2407
PstNI	CAGNNNCTG	3 cut(s)	770, 3221, 3667
PvuII	CAGCTG	1 cut(s)	2386
RsaI	GTAC	5 cut(s)	549, 739, 2559, 3617, 3681
RsaNI	GTAC	5 cut(s)	548, 738, 2558, 3616, 3680
RseI	CAYNNNNRTG	5 cut(s)	282, 331, 1845, 2524, 3821
SacI	GAGCTC	1 cut(s)	2853
SaqAI	TTAA	7 cut(s)	210, 483, 744, 2531, 2603, 2949, 3104
SchI	GAGTC	4 cut(s)	348, 673, 2199, 2774
SduI	GDGCHC	5 cut(s)	148, 2251, 2287, 2853, 3753
SexAI	ACCWGGT	1 cut(s)	938
SfcI	CTRYAG	6 cut(s)	802, 1428, 1524, 2335, 2403, 3807
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	9 cut(s)	450, 1198, 2428, 2993, 3236, 3528, 3549, 3710, 3914
SmiMI	CAYNNNNRTG	5 cut(s)	282, 331, 1845, 2524, 3821
SmlI	CTYRAG	4 cut(s)	407, 1278, 2681, 3195
SmoI	CTYRAG	4 cut(s)	407, 1278, 2681, 3195
SspI	AATATT	1 cut(s)	3099
SspMI	CTAG	9 cut(s)	261, 1178, 1502, 1716, 1725, 2097, 2657, 2777, 3878
SstI	GAGCTC	1 cut(s)	2853
StyI	CCWWGG	3 cut(s)	49, 895, 2895
TaiI	ACGT	2 cut(s)	1645, 1783
TaqI	TCGA	4 cut(s)	389, 429, 3354, 3477
TatI	WGTACW	2 cut(s)	547, 737
TauI	GCSGC	5 cut(s)	25, 45, 2908, 3442, 3590
Tru1I	TTAA	7 cut(s)	210, 483, 744, 2531, 2603, 2949, 3104
Tru9I	TTAA	7 cut(s)	210, 483, 744, 2531, 2603, 2949, 3104
TscAI	CASTG	7 cut(s)	406, 913, 939, 2206, 2926, 3762, 3871
TseFI	GTSAC	5 cut(s)	930, 1165, 2701, 2723, 2942
TseI	GCWGC	9 cut(s)	572, 694, 912, 2383, 2410, 2477, 2593, 3305, 3826
Tsp45I	GTSAC	5 cut(s)	930, 1165, 2701, 2723, 2942
TspGWI	ACGGA	3 cut(s)	148, 2462, 3723
TspRI	CASTG	7 cut(s)	406, 913, 939, 2206, 2926, 3762, 3871
VpaK11BI	GGWCC	9 cut(s)	450, 1198, 2428, 2993, 3236, 3528, 3549, 3710, 3914
VspI	ATTAAT	1 cut(s)	2949
XagI	CCTNNNNNAGG	2 cut(s)	3000, 3544
XapI	RAATTY	5 cut(s)	1469, 2048, 2238, 2827, 2862
XbaI	TCTAGA	3 cut(s)	1501, 2096, 2656
XceI	RCATGY	4 cut(s)	281, 1144, 1225, 2460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3123
XmiI	GTMKAC	1 cut(s)	1149
XmnI	GAANNNNTTC	3 cut(s)	1387, 3078, 3141
XspI	CTAG	9 cut(s)	261, 1178, 1502, 1716, 1725, 2097, 2657, 2777, 3878
Zsp2I	ATGCAT	3 cut(s)	1864, 2458, 2982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.