Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009212

Physical Location & Seq

Genomic Coordinates Reverse (-)

14377367 .. 14384033

Gene Structure 6667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3780 bp

ATGTTCTCTCCCGGAACCAAGCGGCCCAATGCCAACCCTCGCCGCGACCAAGGCTCTCCGGCCACTCCTCTCACCGAGATCCGGCGATCCTCTCCGGACAATTCTGTCCCCAATCGCCCCACCACCGGCACTCCGGCTCCCTGGGCTCCTCGCCTTTCCGTCCTCGCCAGGGTTCTACCGGGTAATCAAAACGAAAAAGGCGATGAAATTAAGCCTGTATATGTCGGAGAGTTTCCGCAAGTTGTTCGTGATGAACAGGCTAGTATGCTCCAGAAGCATGCTCATGGCGATGCTTCGGTATCCGGTGGAATGGAGAGAGGGACATCATTGGCGTGGATTATATGCGGAAGCAGACTCTTTGTGTGGAGTTATTTGTCTCCTGGTTCGTCGACGAGTTGCGCTGTTCTTGAGATCCCTGGAAGCGTTTTCGAAGGTGGGGAGGCTGGGAGGACCGGTGGGAACTCGTGGTTGCTTCGCGTTGTTAATTGGGATAACACATCTACGAGAACAAAGAAAGTTGTGAAACAATGTAGCTCTGCTGGTATTGTACTGTGTAACAAAAAGACCCGCGCTGCTGTGTATTGGCCTGACATATACGGTGAAGGGAGAACTGATCCGGTTGTTAGTGTTGCATCTTCTGTTGAATTGGAGGTTGCGTCCTCACCCATTGATAGGAAGACTCCCCAAAGGAGGCAGCAGTTACTTAGCAGGCACAGGAGTAGTTTGAGTGGATCTTGTACTTTTAACTCCCTGATTGCGTGTGCAGTCCCTGATTCCCGTAATGAGTGTGTTGCAGTTGCCTGTAGTTCAAATGGTGAGCTATGGCAGTTTCTTTGTTGTCCATCTGTTGTTAGCCGTAAGAAAGTGTATCAACACAATCAGGCTTCATCCCCCAAGGGGGTGACAGTGGCAGCAAAGGCTATCCAAGATCGTGAGATGCAATGTTTTAGCATTGAACTTTCTCCTGATTATGTTGTGTCAAAGCTCTGGTCTCATGAGATTATTGGCTCAGATGGTGATCGGGGTATCAAGAAGGATTTGGCCGGGCAGAAGCGAATCTGGCCTCTTGACATGCAGGTAGACTATCATGGTAAAGTGACTACCATTCTAGTTGCTACCTTCTGCTTGGACCGGGGTAGTAGTTCAAGCTACATGCAGTATTCTCTTTTGACCATGCAGTATAAATCTGGAGGTAGTATAGCACCTACTGAAGAAACAGTTTTAGAGAGAAAAGATCCTATCCAGGTGATCATTCCAAAAGCAAGAGTCGAAGATGAAGACTTCTTATTCTCCATGAGACTGCGGGTAGGGGAAAGCCTTCCGGATCAACAATTATACTTTCTGGTTCTAGATGCTGCAATTCTTCCCTCTACAGATGATGGTGAAGAAGGGGCATGGGTTGTTCTAACTGAGAAGGCAGGAATATGGGCAATACCCGAGAAGGCTGTTATGATTGGTGGAGTTGAACCTCCTGAGCGAAGTTTATCACGTAAAGGTAGCTCAAATGAAGGATCCGCACAAGAAGAGAGAAAGAACCTTACATTTGCAGGGAATCTTGCTCCTAGAAGGGCTAGTTCTGAAGCATGGGATGCTGGAGATAGACAAAGGGTTATGCCTGTAATTGCACGTCAAACTGCCCAAGATGAAGAATCAGAAACTTTACTGAGCCAGCTTTTCCATGATTATCATTTACATGGGCAGGTTGATGCATCACTTGAAAAGCTAAAAATTGCGGGGGCATTTGAAAGGGATAGAGAGACAAATGTTTTTGCACGACTGAGCAAATCAATTGTTGATACCTTAGCTAAACATTGGACAACAACCAGAGGAGCTGAGATTTTGGCAATGGCCGTGGTATCCTCCCAACTCACGGATAAGCAACAGAAGCATACAAAATTTCTGGAGTTTCTTGCTCTATCCAAATGTCATGAGGAGCTATGTTCTAGACAGAGACATTCTTTGCAAATTATCTTGGAACACGGTGAAAAGCTTGCTGGAATGGTTCAACTACGGGAATTGCAGAACATCATCAGCCAGAACCGCTCCAGTGGACTCAGCACCTCCCGTTCTAGTCCAGAAAATCAAATATCTGGTGCTCTGTGGGATCTTATTCAATTAGTCGGTGATAGAGCCCGTCGGAATACGGTGCTTCTAATGGACAGGGACAATGCTGAAGTATTCTACAGTAAAGTTTCTGATCTTCAAGAAGTGTTTTCTTGCTTAGACAAGCAGCTGGAGTATGTAATCCCTGCAGAGCAGCCATATGGGATTCAGGTCCAGGGAGCTTGTGAACTCTCAAATGCATGTGTTAGTATTGTCCGTGCAGCCATGCAATACAGAAACACACATCACTTGTGGTATCCCCCACCTGAGTGCTTAACACCCTGGTATTGCCAAGCTGTTGTACGCAATGGGATGTGGCAGGTTGCTTCCTTCATGCTGCAACTGTTAAAAGAAGCATCTCAGATTGATATGTCTGCAAAATCAGATTTATATTCTCATCTAGAACTGCTGGCTGAAGTTCTGCTTGAGGCATATGCTGGTTCTGTCACCGCTAAAGTTGAACTTGGTCACGAACACAAAGGCTTATTAGATGAGTATTGGAATAGAAGGGATGCACTCCTAGACTCACTTTATCACCAAGTCAAAGATTTTGTGGAAGTTGGGCATGAGAATTTGAATGAAGGATCTGATGAGCTCAATGAAGAAATTTTTGGGAAGCTTTCTTCATGTTTGCTTCCCATGGCAAAGCGGCATGAATGCTACAGTACTTTATGGAAAATATGCTGTGACATTAATGATTCTGAACTACTAAAAAATCTGATGCATGACAGCATGGGAGCTAATGGAGGGTTCAGTTACTATGTGTTCAAACAACTATATGCGAGGAAACAATTTTCCAAACTTCTCCGGCTTGGGGAAGAGTTTCATGAAGCGCTCTCAATATTTTTAAAGTATCATCCAGATCTTCTGTGGCTTCATGAAGTGTTTCTTCATCAGTTTTCTTCAGCTTCAGACACCCTTCATGAATTAGCTCTTTCTCAAGAAGAAAGCTCAATTTCAGAGCCTGAAGATGGGACTGGTCCTGGGCATCTCACTACATTACCGAAGCTGGCAGATAGAAAGCGTTTTTTGAATCTCTCAAAAATAGCTGCATTTGCAGGTAAGGATGCTGACTGTGAGATCAAAGTGAAGCGCATCGAGGCTGATTTGAAAATCCTAAAAGTGCAGGAAGAAGTAATAGAACTCCTTTCTTCTGATGAAACAAAGCAAAACCTTGACAAGCGGCTACTTCATCCAGAAGATCTTATCAAGCTGTGCCTCGAAGGTGAAAGCACAGAGCTCTCATTGCGGGCTTTTGATGTTTTCGCATGGACCAGCTCCTCCTTTCGTAGGACCCATGCAAACCTCTTGGACGATTGCTGGAGAAATGCTGCTGATCAAGATGATTGGAGTAGAATGTACCAAGCATCGGTATCTGAAGGGTGGGGTGATGAGGAAACCTTGCAGAACCTGAAAGAGACGGTACTTTTTCAGGCTTCAAGTAGATGTTACGGACCTGAAGCTGAGACTTTCGGAGAAGGGTTTGATGAAGTGCTCCCACTGAGACAAGAAATTGTGGAGCCTTCAACCATGAAAGATTCAGTTTCTTCTTTAGAGGCCATACTTATGCAGCACAAGGACTACTCGGAGGCTGGGAAGCTGATGCTCACTGCAATCATGCTAGGTAGTTTACAGTATGACACCATAGAGGAGGAGGGTCCTGTTCCTATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0006325 GO:0006355 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0031080 GO:0031081 GO:0031323 GO:0031326 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034629 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051664 GO:0051668 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1259

Amino Acids

140.69

Weight (kDa)

5.45

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	74 - 279	1e-12	Nup133 N terminal like
Nucleoporin_C	PF03177	951 - 1104	1.6e-10	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05120 AT2G05120
fragaria_vesca	FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930 FvH4_6g40930
malus_domestica	MD17G1113600.v1.1
prunus_persica	Prupe.3G200800_v2.0.a1
pyrus_communis	pycom17g10520
rosa_chinensis	RchiOBHm_Chr2g0156551
rosa_laevigata	RLG00000020920
rosa_multiflora	Rmu_sc0002717.1_g000003
rosa_roxburghii	Rroxscaffold_2G00092950
rosa_rugosa	Rorug02G0454100 Rorug02G0454200 Rorug02G0454300
rosa_samantha	Rh2AG520000 Rh2BG532500 Rh2CG505000 Rh2DG541400
rosa_wichuraiana	Rw2G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	4 cut(s)	1066, 1690, 2413, 3152
AccBSI	CCGCTC	1 cut(s)	2043
AccI	GTMKAC	2 cut(s)	389, 1080
AccII	CGCG	3 cut(s)	45, 477, 570
AccIII	TCCGGA	2 cut(s)	94, 1321
AcoI	YGGCCR	3 cut(s)	60, 1041, 1848
AcsI	RAATTY	3 cut(s)	1895, 2674, 2709
AcuI	CTGAAG	9 cut(s)	1230, 1599, 2193, 2538, 2991, 2997, 3090, 3501, 3582
AfaI	GTAC	6 cut(s)	549, 739, 2406, 2770, 3464, 3528
AfeI	AGCGCT	1 cut(s)	2937
AgeI	ACCGGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	1628
AjnI	CCWGG	8 cut(s)	140, 167, 379, 415, 1242, 2277, 2384, 3085
AjuI	GAANNNNNNNTTGG	2 cut(s)	2697, 2729
AleI	CACNNNNGTG	1 cut(s)	2371
Alw21I	GWGCWC	4 cut(s)	2098, 2700, 3345, 3600
Alw26I	GTCTC	8 cut(s)	381, 996, 1291, 1751, 1945, 3515, 3563, 3601
AlwNI	CAGNNNCTG	3 cut(s)	770, 3068, 3514
Ama87I	CYCGRG	1 cut(s)	1436
Aor13HI	TCCGGA	2 cut(s)	94, 1321
Aor51HI	AGCGCT	1 cut(s)	2937
AoxI	GGCC	7 cut(s)	23, 60, 584, 1041, 1061, 1848, 3660
ApoI	RAATTY	3 cut(s)	1895, 2674, 2709
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AseI	ATTAAT	1 cut(s)	2796
AsiGI	ACCGGT	1 cut(s)	452
Asp700I	GAANNNNTTC	3 cut(s)	1317, 2925, 2988
AspLEI	GCGC	4 cut(s)	401, 572, 2938, 3198
AspS9I	GGNCC	9 cut(s)	24, 450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
AsuC2I	CCSGG	4 cut(s)	12, 180, 1045, 1133
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	1436
AvaII	GGWCC	8 cut(s)	450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
BamHI	GGATCC	1 cut(s)	1511
BanII	GRGCYC	4 cut(s)	148, 2134, 2700, 3345
BauI	CACGAG	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	683, 1284
Bbv12I	GWGCWC	4 cut(s)	2098, 2700, 3345, 3600
BccI	CCATC	4 cut(s)	850, 1007, 1373, 3068
BceAI	ACGGC	2 cut(s)	840, 1835
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	8 cut(s)	142, 169, 381, 417, 1244, 2279, 2386, 3087
BciVI	GTATCC	3 cut(s)	310, 1867, 2370
BclI	TGATCA	2 cut(s)	1248, 3439
BcnI	CCSGG	4 cut(s)	12, 180, 1045, 1133
BcoDI	GTCTC	8 cut(s)	381, 996, 1291, 1751, 1945, 3515, 3563, 3601
BfmI	CTRYAG	5 cut(s)	802, 1371, 2182, 2250, 2764
BfoI	RGCGCY	1 cut(s)	2939
BfuAI	ACCTGC	4 cut(s)	1066, 1690, 2413, 3152
BfuI	GTATCC	3 cut(s)	310, 1867, 2370
BglII	AGATCT	2 cut(s)	2965, 3304
BmcAI	AGTACT	1 cut(s)	2770
Bme18I	GGWCC	8 cut(s)	450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
BmeT110I	CYCGRG	1 cut(s)	1436
BmgBI	CACGTC	1 cut(s)	1628
BmgT120I	GGNCC	9 cut(s)	24, 450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
BmiI	GGNNCC	7 cut(s)	16, 138, 147, 1513, 3398, 3624, 3762
BpiI	GAAGAC	2 cut(s)	683, 1284
BpmI	CTGGAG	7 cut(s)	254, 1209, 1614, 1922, 2029, 2255, 3445
Bpu10I	CCTNAGC	2 cut(s)	1473, 1801
Bpu14I	TTCGAA	1 cut(s)	429
BpuEI	CTTGAG	3 cut(s)	428, 2549, 3027
BpuMI	CCSGG	4 cut(s)	12, 180, 1045, 1133
BsaAI	YACGTR	1 cut(s)	1490
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaI	GGTCTC	1 cut(s)	996
BsaWI	WCCGGW	5 cut(s)	94, 302, 452, 616, 1321
BsaXI	ACNNNNNCTCC	8 cut(s)	115, 121, 145, 151, 439, 469, 641, 671
Bse118I	RCCGGY	2 cut(s)	125, 452
Bse1I	ACTGG	2 cut(s)	2046, 3085
Bse3DI	GCAATG	4 cut(s)	947, 1851, 2416, 3347
Bse8I	GATNNNNATC	1 cut(s)	1017
BseAI	TCCGGA	2 cut(s)	94, 1321
BseBI	CCWGG	8 cut(s)	142, 169, 381, 417, 1244, 2279, 2386, 3087
BseGI	GGATG	7 cut(s)	887, 1594, 2421, 2620, 2959, 3175, 3295
BseJI	GATNNNNATC	1 cut(s)	1017
BseMI	GCAATG	4 cut(s)	947, 1851, 2416, 3347
BseNI	ACTGG	2 cut(s)	2046, 3085
BseRI	GAGGAG	7 cut(s)	57, 138, 1842, 1946, 3373, 3767, 3770
BseYI	CCCAGC	2 cut(s)	443, 3695
BsgI	GTGCAG	3 cut(s)	783, 2343, 3248
Bsh1236I	CGCG	3 cut(s)	45, 477, 570
BshFI	GGCC	7 cut(s)	25, 62, 586, 1043, 1063, 1850, 3662
BshTI	ACCGGT	1 cut(s)	452
BsiHKAI	GWGCWC	4 cut(s)	2098, 2700, 3345, 3600
BsiHKCI	CYCGRG	1 cut(s)	1436
BslFI	GGGAC	5 cut(s)	92, 334, 752, 2177, 3091
BsmAI	GTCTC	8 cut(s)	381, 996, 1291, 1751, 1945, 3515, 3563, 3601
BsmBI	CGTCTC	1 cut(s)	3515
BsmFI	GGGAC	5 cut(s)	92, 334, 752, 2177, 3091
BsmI	GAATGC	1 cut(s)	2765
BsnI	GGCC	7 cut(s)	25, 62, 586, 1043, 1063, 1850, 3662
Bso31I	GGTCTC	1 cut(s)	996
BsoBI	CYCGRG	1 cut(s)	1436
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	6 cut(s)	148, 2098, 2134, 2700, 3345, 3600
Bsp13I	TCCGGA	2 cut(s)	94, 1321
Bsp19I	CCATGG	1 cut(s)	2742
BspANI	GGCC	7 cut(s)	25, 62, 586, 1043, 1063, 1850, 3662
BspEI	TCCGGA	2 cut(s)	94, 1321
BspFNI	CGCG	3 cut(s)	45, 477, 570
BspHI	TCATGA	5 cut(s)	994, 1927, 2929, 2980, 3025
BspLI	GGNNCC	7 cut(s)	16, 138, 147, 1513, 3398, 3624, 3762
BspMAI	CTGCAG	1 cut(s)	2254
BspMI	ACCTGC	4 cut(s)	1066, 1690, 2413, 3152
BspT104I	TTCGAA	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	996
BsrBI	CCGCTC	1 cut(s)	2043
BsrDI	GCAATG	4 cut(s)	947, 1851, 2416, 3347
BsrFI	RCCGGY	2 cut(s)	125, 452
BsrI	ACTGG	2 cut(s)	2046, 3085
BssAI	RCCGGY	2 cut(s)	125, 452
BssSI	CACGAG	1 cut(s)	463
BssT1I	CCWWGG	3 cut(s)	49, 894, 2742
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	8 cut(s)	142, 169, 381, 417, 1244, 2279, 2386, 3087
Bst6I	CTCTTC	2 cut(s)	1518, 2916
BstAPI	GCANNNNNTGC	1 cut(s)	1589
BstBAI	YACGTR	1 cut(s)	1490
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	7 cut(s)	279, 710, 1670, 1992, 2514, 3114, 3354
BstDSI	CCRYGG	2 cut(s)	1851, 2742
BstENI	CCTNNNNNAGG	1 cut(s)	3391
BstF5I	GGATG	7 cut(s)	887, 1594, 2421, 2620, 2959, 3175, 3295
BstFNI	CGCG	3 cut(s)	45, 477, 570
BstH2I	RGCGCY	1 cut(s)	2939
BstHHI	GCGC	4 cut(s)	401, 572, 2938, 3198
BstMAI	GTCTC	8 cut(s)	381, 996, 1291, 1751, 1945, 3515, 3563, 3601
BstNI	CCWGG	8 cut(s)	142, 169, 381, 417, 1244, 2279, 2386, 3087
BstNSI	RCATGY	4 cut(s)	281, 1075, 1156, 2307
BstSFI	CTRYAG	5 cut(s)	802, 1371, 2182, 2250, 2764
BstUI	CGCG	3 cut(s)	45, 477, 570
BstV2I	GAAGAC	2 cut(s)	683, 1284
BstX2I	RGATCY	9 cut(s)	78, 411, 731, 1234, 1511, 2104, 2687, 2965, 3304
BstYI	RGATCY	9 cut(s)	78, 411, 731, 1234, 1511, 2104, 2687, 2965, 3304
BsuI	GTATCC	3 cut(s)	310, 1867, 2370
BsuRI	GGCC	7 cut(s)	25, 62, 586, 1043, 1063, 1850, 3662
BtgI	CCRYGG	2 cut(s)	1851, 2742
BtgZI	GCGATG	2 cut(s)	216, 303
BtrI	CACGTC	1 cut(s)	1628
BtsCI	GGATG	7 cut(s)	887, 1594, 2421, 2620, 2959, 3175, 3295
BtsI	GCAGTG	1 cut(s)	3711
BtsIMutI	CAGTG	4 cut(s)	912, 2053, 3602, 3711
BveI	ACCTGC	4 cut(s)	1066, 1690, 2413, 3152
Cac8I	GCNNGC	7 cut(s)	279, 710, 1670, 1992, 2514, 3114, 3354
CaiI	CAGNNNCTG	3 cut(s)	770, 3068, 3514
CciI	TCATGA	5 cut(s)	994, 1927, 2929, 2980, 3025
CfoI	GCGC	4 cut(s)	401, 572, 2938, 3198
Cfr10I	RCCGGY	2 cut(s)	125, 452
Cfr13I	GGNCC	9 cut(s)	24, 450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	6 cut(s)	548, 738, 2405, 2769, 3463, 3527
CspAI	ACCGGT	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	1833, 1868
CviQI	GTAC	6 cut(s)	548, 738, 2405, 2769, 3463, 3527
DraI	TTTAAA	1 cut(s)	2952
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	3 cut(s)	60, 1041, 1848
Eam1104I	CTCTTC	2 cut(s)	1518, 2916
EarI	CTCTTC	2 cut(s)	1518, 2916
Ecl136II	GAGCTC	2 cut(s)	2698, 3343
Eco130I	CCWWGG	3 cut(s)	49, 894, 2742
Eco24I	GRGCYC	4 cut(s)	148, 2134, 2700, 3345
Eco31I	GGTCTC	1 cut(s)	996
Eco47I	GGWCC	8 cut(s)	450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
Eco47III	AGCGCT	1 cut(s)	2937
Eco53kI	GAGCTC	2 cut(s)	2698, 3343
Eco57I	CTGAAG	9 cut(s)	1230, 1599, 2193, 2538, 2991, 2997, 3090, 3501, 3582
Eco88I	CYCGRG	1 cut(s)	1436
EcoICRI	GAGCTC	2 cut(s)	2698, 3343
EcoNI	CCTNNNNNAGG	1 cut(s)	3391
EcoO109I	RGGNCCY	2 cut(s)	3396, 3761
EcoRII	CCWGG	8 cut(s)	140, 167, 379, 415, 1242, 2277, 2384, 3085
EcoT14I	CCWWGG	3 cut(s)	49, 894, 2742
EcoT22I	ATGCAT	3 cut(s)	1711, 2305, 2829
EcoT38I	GRGCYC	4 cut(s)	148, 2134, 2700, 3345
ErhI	CCWWGG	3 cut(s)	49, 894, 2742
Esp3I	CGTCTC	1 cut(s)	3515
FalI	AAGNNNNNCTT	6 cut(s)	2511, 2543, 2550, 2582, 2976, 3008
FaqI	GGGAC	5 cut(s)	92, 334, 752, 2177, 3091
FauI	CCCGC	4 cut(s)	575, 1296, 1726, 3345
FauNDI	CATATG	2 cut(s)	2263, 2536
FbaI	TGATCA	2 cut(s)	1248, 3439
FblI	GTMKAC	2 cut(s)	389, 1080
FokI	GGATG	7 cut(s)	874, 1601, 2428, 2627, 2946, 3182, 3282
FriOI	GRGCYC	4 cut(s)	148, 2134, 2700, 3345
GlaI	GCGC	4 cut(s)	400, 571, 2937, 3197
GsaI	CCCAGC	2 cut(s)	447, 3699
GsuI	CTGGAG	7 cut(s)	254, 1209, 1614, 1922, 2029, 2255, 3445
HaeII	RGCGCY	1 cut(s)	2939
HaeIII	GGCC	7 cut(s)	25, 62, 586, 1043, 1063, 1850, 3662
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	4 cut(s)	401, 572, 2938, 3198
Hin6I	GCGC	4 cut(s)	399, 570, 2936, 3196
HinP1I	GCGC	4 cut(s)	399, 570, 2936, 3196
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	2 cut(s)	1988, 2720
Hpy166II	GTNNAC	5 cut(s)	390, 1081, 2051, 2291, 3734
Hpy8I	GTNNAC	5 cut(s)	390, 1081, 2051, 2291, 3734
Hpy99I	CGWCG	3 cut(s)	391, 394, 2139
HpyCH4IV	ACGT	2 cut(s)	1489, 1627
HpySE526I	ACGT	2 cut(s)	1489, 1627
HspAI	GCGC	4 cut(s)	399, 570, 2936, 3196
Kpn2I	TCCGGA	2 cut(s)	94, 1321
Ksp22I	TGATCA	2 cut(s)	1248, 3439
MaeII	ACGT	2 cut(s)	1489, 1627
MaeIII	GTNAC	9 cut(s)	554, 699, 901, 1096, 2548, 2570, 2789, 2858, 3551
MbiI	CCGCTC	1 cut(s)	2043
MfeI	CAATTG	1 cut(s)	1788
MflI	RGATCY	9 cut(s)	78, 411, 731, 1234, 1511, 2104, 2687, 2965, 3304
MhlI	GDGCHC	6 cut(s)	148, 2098, 2134, 2700, 3345, 3600
MlyI	GAGTC	5 cut(s)	348, 673, 1275, 2046, 2621
MmeI	TCCRAC	2 cut(s)	205, 2117
Mph1103I	ATGCAT	3 cut(s)	1711, 2305, 2829
MroI	TCCGGA	2 cut(s)	94, 1321
MroXI	GAANNNNTTC	3 cut(s)	1317, 2925, 2988
MseI	TTAA	7 cut(s)	210, 483, 744, 2378, 2450, 2796, 2951
MslI	CAYNNNNRTG	6 cut(s)	282, 288, 331, 1692, 2371, 3668
MspA1I	CMGCKG	1 cut(s)	2233
MunI	CAATTG	1 cut(s)	1788
Mva1269I	GAATGC	1 cut(s)	2765
MvaI	CCWGG	8 cut(s)	142, 169, 381, 417, 1244, 2279, 2386, 3087
MvnI	CGCG	3 cut(s)	45, 477, 570
NciI	CCSGG	4 cut(s)	12, 180, 1045, 1133
NcoI	CCATGG	1 cut(s)	2742
NdeI	CATATG	2 cut(s)	2263, 2536
NlaIV	GGNNCC	7 cut(s)	16, 138, 147, 1513, 3398, 3624, 3762
NmuCI	GTSAC	5 cut(s)	901, 1096, 2548, 2570, 2789
NsiI	ATGCAT	3 cut(s)	1711, 2305, 2829
NspI	RCATGY	4 cut(s)	281, 1075, 1156, 2307
NspV	TTCGAA	1 cut(s)	429
OliI	CACNNNNGTG	1 cut(s)	2371
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	5 cut(s)	994, 1927, 2929, 2980, 3025
PasI	CCCWGGG	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	1 cut(s)	2765
PdmI	GAANNNNTTC	3 cut(s)	1317, 2925, 2988
PfeI	GAWTC	8 cut(s)	773, 1056, 1552, 1649, 2269, 2801, 3136, 3641
PfoI	TCCNGGA	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	452
PleI	GAGTC	5 cut(s)	348, 673, 1274, 2046, 2621
PpsI	GAGTC	5 cut(s)	348, 673, 1274, 2046, 2621
Ppu21I	YACGTR	1 cut(s)	1490
PpuMI	RGGWCCY	2 cut(s)	3396, 3761
PshBI	ATTAAT	1 cut(s)	2796
Psp124BI	GAGCTC	2 cut(s)	2700, 3345
Psp5II	RGGWCCY	2 cut(s)	3396, 3761
Psp6I	CCWGG	8 cut(s)	140, 167, 379, 415, 1242, 2277, 2384, 3085
PspFI	CCCAGC	2 cut(s)	443, 3695
PspGI	CCWGG	8 cut(s)	140, 167, 379, 415, 1242, 2277, 2384, 3085
PspN4I	GGNNCC	7 cut(s)	16, 138, 147, 1513, 3398, 3624, 3762
PspPI	GGNCC	9 cut(s)	24, 450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
PspPPI	RGGWCCY	2 cut(s)	3396, 3761
PstI	CTGCAG	1 cut(s)	2254
PstNI	CAGNNNCTG	3 cut(s)	770, 3068, 3514
PsuI	RGATCY	9 cut(s)	78, 411, 731, 1234, 1511, 2104, 2687, 2965, 3304
PvuII	CAGCTG	1 cut(s)	2233
RsaI	GTAC	6 cut(s)	549, 739, 2406, 2770, 3464, 3528
RsaNI	GTAC	6 cut(s)	548, 738, 2405, 2769, 3463, 3527
RseI	CAYNNNNRTG	6 cut(s)	282, 288, 331, 1692, 2371, 3668
SacI	GAGCTC	2 cut(s)	2700, 3345
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	7 cut(s)	210, 483, 744, 2378, 2450, 2796, 2951
Sau96I	GGNCC	9 cut(s)	24, 450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
ScaI	AGTACT	1 cut(s)	2770
SchI	GAGTC	5 cut(s)	348, 673, 1275, 2046, 2621
SduI	GDGCHC	6 cut(s)	148, 2098, 2134, 2700, 3345, 3600
SfcI	CTRYAG	5 cut(s)	802, 1371, 2182, 2250, 2764
SfuI	TTCGAA	1 cut(s)	429
SgrDI	CGTCGACG	1 cut(s)	388
SinI	GGWCC	8 cut(s)	450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
SmiMI	CAYNNNNRTG	6 cut(s)	282, 288, 331, 1692, 2371, 3668
SmlI	CTYRAG	3 cut(s)	407, 2528, 3042
SmoI	CTYRAG	3 cut(s)	407, 2528, 3042
SphI	GCATGC	1 cut(s)	281
SspI	AATATT	1 cut(s)	2946
SstI	GAGCTC	2 cut(s)	2700, 3345
StyI	CCWWGG	3 cut(s)	49, 894, 2742
TaiI	ACGT	2 cut(s)	1492, 1630
TaqI	TCGA	5 cut(s)	389, 429, 1269, 3201, 3324
TatI	WGTACW	3 cut(s)	547, 737, 2768
TauI	GCSGC	4 cut(s)	25, 45, 2755, 3289
TfiI	GAWTC	8 cut(s)	773, 1056, 1552, 1649, 2269, 2801, 3136, 3641
Tru1I	TTAA	7 cut(s)	210, 483, 744, 2378, 2450, 2796, 2951
Tru9I	TTAA	7 cut(s)	210, 483, 744, 2378, 2450, 2796, 2951
TscAI	CASTG	4 cut(s)	912, 2053, 3609, 3718
TseFI	GTSAC	5 cut(s)	901, 1096, 2548, 2570, 2789
Tsp45I	GTSAC	5 cut(s)	901, 1096, 2548, 2570, 2789
TspGWI	ACGGA	4 cut(s)	148, 1886, 2309, 3570
TspRI	CASTG	4 cut(s)	912, 2053, 3609, 3718
VpaK11BI	GGWCC	8 cut(s)	450, 1129, 2275, 3083, 3375, 3396, 3557, 3761
VspI	ATTAAT	1 cut(s)	2796
XagI	CCTNNNNNAGG	1 cut(s)	3391
XapI	RAATTY	3 cut(s)	1895, 2674, 2709
XbaI	TCTAGA	3 cut(s)	1348, 1943, 2503
XceI	RCATGY	4 cut(s)	281, 1075, 1156, 2307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2970
XmiI	GTMKAC	2 cut(s)	389, 1080
XmnI	GAANNNNTTC	3 cut(s)	1317, 2925, 2988
ZrmI	AGTACT	1 cut(s)	2770
Zsp2I	ATGCAT	3 cut(s)	1711, 2305, 2829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.