Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008877

Physical Location & Seq

Genomic Coordinates Reverse (-)

58373587 .. 58376569

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0454300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGATGGATTAGCAGGCCCAGTGATTGAATCGGCCCATTTCATATTTCCATTAAAAGTTAAAAGCAGAGCCGTCGACGGCGGGGAAGAGATCGAAGCGAGAGAGAGTGAGAGGGAAATGGCTTCGAGGGTTTTGGTTGGCATTCGTAAGCTGCTTGTTGGAAGATCATGTTACAAAGCCTCAATCCCAACCTCCCAATTCTCCACTTTAGCCGTCGATGGCCTCTCCTCAGTGGTTCCATTGCAACCCATTTCCGGACACTCAGGGGTTTTGACATTCGATAAAATTCGAGGCAATATTCGAGATACATCTTTGCAAGCAGTCTGCTGCTTCTATGGCACTAATGACTTCAGCTTTAAGTACATTCAAAGGCTGGTGGACAAATTCCCTCCTGTAAAAGCATTTCATTTTGTCCTTGACGACAATGATAAGGATTCGTCTTCAATGAGAGCGTTGAACATTTCAAGTCTGCCAATGTATCATTTCTATCAAAATGGGGAAAAGGTAGAGGAGCTAGCTGGTGATTATATCAAACGCTTCAAGACAGTTCTTGAAAAACTTTACAACCCTCAAGAAGTTGGCACAAAAGCCAAGGAAAATGTGATGCATGAAGGCGTAGTTCAAAGACGGAACGAGGAGGAAAGAAAAAAGCCTATGATGAGCATTTATATGAATCAATTATTTCCAAGATCTAATTCCAGTTTTAAGTTATCTAGTGGGAATGCCTTAGAAGCTGAAGTTGTACGCTTAAGGGAAGATAAGTTCTTGGTAGATGCAGGACTTGGGACCCCCAGAATTTGCATGCAAGATGAGACTACAGGAGTGCCAAACCGAGCCATCAGGTTTAAGACTAAGGTGGGATACATTTCTAAGGGGGGAGTGGCCGGTGAATCAGTGATCAAAGAGCAGATGTTGGAGAGATTCTTCATCGATGTAGTGGCTGGTGAATCAAAGATCAAAGAGCGAGCAGCCGCCAGGTTTCAGTCTTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCATCTTCTTCTTCCACGAAGATTCAGACAGAGGCGAGCTTGGATGGAACTGAACAAGATTTGGCAAAGGAATAGAAAGGTAAAGGGCTTTATTCTTCAGAAAGTCAAGGGAGGTTATTTAGTAGGCATCGGGGGTTTCGTTACTTTTCTTCCAATCCGCCGAAAAGTAGCGATATCGAATGGTCGATTCACGATTGAGAGCATTAACCGCAAAAGGCCTAATATTGTTGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

419

Amino Acids

47.25

Weight (kDa)

9.8

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40950 FvH4_6g40950
malus_domestica	MD09G1122600.v1.1 MD09G1122800.v1.1 MD17G1113500.v1.1
prunus_persica	Prupe.3G200900_v2.0.a1
pyrus_communis	pycom09g04700 pycom09g04710 pycom17g10510
rosa_chinensis	RchiOBHm_Chr2g0156561 RchiOBHm_Chr2g0156581
rosa_laevigata	RLG00000020921
rosa_multiflora	Rmu_sc0011512.1_g000006
rosa_roxburghii	Rroxscaffold_2G00092940
rosa_rugosa	Rorug02G0454300
rosa_samantha	Rh2AG520100 Rh2BG532600 Rh2BG533100 Rh2CG505100 Rh2DG541500 Rh2DG541900
rosa_wichuraiana	Rw2G042880 Rw2G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	5 cut(s)	81, 972, 1022, 1180, 1231
AclWI	GGATC	2 cut(s)	990, 1003
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	3 cut(s)	285, 383, 795
AcuI	CTGAAG	3 cut(s)	334, 756, 1103
AfaI	GTAC	2 cut(s)	362, 744
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflII	CTTAAG	1 cut(s)	748
AgsI	TTSAA	8 cut(s)	29, 368, 444, 457, 465, 541, 554, 623
AjnI	CCWGG	1 cut(s)	974
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	6 cut(s)	151, 354, 514, 518, 734, 1061
AluI	AGCT	6 cut(s)	151, 354, 514, 518, 734, 1061
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	2 cut(s)	990, 1003
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	5 cut(s)	16, 33, 220, 882, 1238
ApeKI	GCWGC	3 cut(s)	151, 327, 968
ApoI	RAATTY	3 cut(s)	285, 383, 795
AspS9I	GGNCC	3 cut(s)	17, 34, 786
AsuHPI	GGTGA	4 cut(s)	533, 899, 956, 1028
AsuNHI	GCTAGC	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	786
BamHI	GGATCC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	138, 314, 980
BccI	CCATC	3 cut(s)	212, 845, 1060
BceAI	ACGGC	3 cut(s)	56, 94, 197
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	976
BciVI	GTATCC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	897
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	2 cut(s)	515, 714
BfmI	CTRYAG	1 cut(s)	816
BfrI	CTTAAG	1 cut(s)	748
BfuI	GTATCC	1 cut(s)	854
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	4 cut(s)	152, 328, 969, 972
BlsI	GCNGC	4 cut(s)	153, 329, 970, 973
Bme1390I	CCNGG	1 cut(s)	976
Bme18I	GGWCC	1 cut(s)	786
BmgT120I	GGNCC	3 cut(s)	17, 34, 786
BmiI	GGNNCC	4 cut(s)	237, 787, 788, 997
BmrFI	CCNGG	1 cut(s)	976
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	594, 763, 1033, 1158
BmtI	GCTAGC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	930
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	2 cut(s)	20, 699
Bse3DI	GCAATG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	976
BseCI	ATCGAT	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	10, 1071
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	243, 276
BseNI	ACTGG	2 cut(s)	20, 699
BseRI	GAGGAG	3 cut(s)	217, 524, 650
BseXI	GCAGC	3 cut(s)	138, 314, 980
BshFI	GGCC	5 cut(s)	18, 35, 222, 884, 1240
BshVI	ATCGAT	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	255, 885
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	2 cut(s)	141, 727
BsnI	GGCC	5 cut(s)	18, 35, 222, 884, 1240
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
BspACI	CCGC	5 cut(s)	81, 972, 1022, 1180, 1231
BspANI	GGCC	5 cut(s)	18, 35, 222, 884, 1240
BspCNI	CTCAG	2 cut(s)	242, 275
BspDI	ATCGAT	1 cut(s)	930
BspEI	TCCGGA	1 cut(s)	254
BspLI	GGNNCC	4 cut(s)	237, 787, 788, 997
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	990, 1003
BspTI	CTTAAG	1 cut(s)	748
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	2 cut(s)	20, 699
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	976
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	81
BstAFI	CTTAAG	1 cut(s)	748
BstC8I	GCNNGC	6 cut(s)	16, 318, 516, 803, 966, 1059
BstDEI	CTNAG	5 cut(s)	229, 262, 727, 852, 870
BstF5I	GGATG	2 cut(s)	10, 1071
BstKTI	GATC	6 cut(s)	93, 167, 692, 900, 957, 998
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 731, 1230
BstNI	CCWGG	1 cut(s)	976
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	974
BstSFI	CTRYAG	1 cut(s)	816
BstV1I	GCAGC	3 cut(s)	138, 314, 980
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	689, 995
BstYI	RGATCY	2 cut(s)	689, 995
Bsu15I	ATCGAT	1 cut(s)	930
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	5 cut(s)	18, 35, 222, 884, 1240
BsuTUI	ATCGAT	1 cut(s)	930
BtsCI	GGATG	2 cut(s)	10, 1071
BtsIMutI	CAGTG	3 cut(s)	27, 237, 900
Cac8I	GCNNGC	6 cut(s)	16, 318, 516, 803, 966, 1059
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	3 cut(s)	17, 34, 786
ClaI	ATCGAT	1 cut(s)	930
Csp6I	GTAC	2 cut(s)	361, 743
CviAII	CATG	3 cut(s)	168, 608, 802
CviQI	GTAC	2 cut(s)	361, 743
DdeI	CTNAG	5 cut(s)	229, 262, 727, 852, 870
DpnI	GATC	6 cut(s)	92, 166, 691, 899, 956, 997
DpnII	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	1169
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	1240
Eco32I	GATATC	1 cut(s)	1197
Eco47I	GGWCC	1 cut(s)	786
Eco57I	CTGAAG	3 cut(s)	334, 756, 1103
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRII	CCWGG	1 cut(s)	974
EcoRV	GATATC	1 cut(s)	1197
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	171, 611, 805
FaiI	YATR	9 cut(s)	44, 169, 336, 528, 609, 656, 669, 671, 803
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	3 cut(s)	167, 607, 801
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	897
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	152, 328, 969, 972
FokI	GGATG	2 cut(s)	17, 1078
Fsp4HI	GCNGC	4 cut(s)	152, 328, 969, 972
FspBI	CTAG	2 cut(s)	515, 714
GluI	GCNGC	4 cut(s)	152, 328, 969, 972
HaeIII	GGCC	5 cut(s)	18, 35, 222, 884, 1240
HapII	CCGG	2 cut(s)	255, 885
Hin1II	CATG	3 cut(s)	171, 611, 805
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	8 cut(s)	29, 434, 673, 890, 921, 947, 1044, 1209
HpaII	CCGG	2 cut(s)	255, 885
HphI	GGTGA	4 cut(s)	533, 899, 956, 1028
Hpy166II	GTNNAC	3 cut(s)	76, 379, 1019
Hpy188I	TCNGA	2 cut(s)	1049, 1122
Hpy188III	TCNNGA	6 cut(s)	255, 302, 541, 551, 572, 1213
Hpy8I	GTNNAC	3 cut(s)	76, 379, 1019
Hpy99I	CGWCG	3 cut(s)	77, 80, 218
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	6 cut(s)	244, 316, 607, 776, 801, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 731, 1230
HpyF3I	CTNAG	5 cut(s)	229, 262, 727, 852, 870
Hsp92II	CATG	3 cut(s)	171, 611, 805
KflI	GGGWCCC	1 cut(s)	786
Kpn2I	TCCGGA	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	897
Kzo9I	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	3 cut(s)	138, 314, 980
LweI	GCATC	4 cut(s)	594, 763, 1033, 1158
MaeI	CTAG	2 cut(s)	515, 714
MaeIII	GTNAC	2 cut(s)	170, 1162
MalI	GATC	6 cut(s)	92, 166, 691, 899, 956, 997
MboI	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
MflI	RGATCY	2 cut(s)	689, 995
MluCI	AATT	6 cut(s)	197, 285, 383, 677, 694, 795
MmeI	TCCRAC	2 cut(s)	139, 894
Mph1103I	ATGCAT	1 cut(s)	609
MroI	TCCGGA	1 cut(s)	254
MseI	TTAA	7 cut(s)	53, 60, 357, 705, 749, 846, 1227
MslI	CAYNNNNRTG	1 cut(s)	668
MspCI	CTTAAG	1 cut(s)	748
MspI	CCGG	2 cut(s)	255, 885
MspR9I	CCNGG	1 cut(s)	976
Mva1269I	GAATGC	2 cut(s)	141, 727
MvaI	CCWGG	1 cut(s)	976
MwoI	GCNNNNNNNGC	3 cut(s)	336, 731, 1230
NdeII	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	3 cut(s)	171, 611, 805
NlaIV	GGNNCC	4 cut(s)	237, 787, 788, 997
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	1 cut(s)	805
PaeI	GCATGC	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	1240
PcsI	WCGNNNNNNNCGW	1 cut(s)	1158
PctI	GAATGC	2 cut(s)	141, 727
PfeI	GAWTC	8 cut(s)	29, 434, 673, 890, 921, 947, 1044, 1209
PkrI	GCNGC	4 cut(s)	153, 329, 970, 973
PpuMI	RGGWCCY	1 cut(s)	786
Psp5II	RGGWCCY	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	974
PspGI	CCWGG	1 cut(s)	974
PspN4I	GGNNCC	4 cut(s)	237, 787, 788, 997
PspPI	GGNCC	3 cut(s)	17, 34, 786
PspPPI	RGGWCCY	1 cut(s)	786
PsuI	RGATCY	2 cut(s)	689, 995
RsaI	GTAC	2 cut(s)	362, 744
RsaNI	GTAC	2 cut(s)	361, 743
RseI	CAYNNNNRTG	1 cut(s)	668
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	7 cut(s)	53, 60, 357, 705, 749, 846, 1227
SatI	GCNGC	4 cut(s)	152, 328, 969, 972
Sau3AI	GATC	6 cut(s)	90, 164, 689, 897, 954, 995
Sau96I	GGNCC	3 cut(s)	17, 34, 786
ScrFI	CCNGG	1 cut(s)	976
SfaNI	GCATC	4 cut(s)	594, 763, 1033, 1158
SfcI	CTRYAG	1 cut(s)	816
SgrDI	CGTCGACG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	570, 748
SmoI	CTYRAG	2 cut(s)	570, 748
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	6 cut(s)	197, 285, 383, 677, 694, 795
SseBI	AGGCCT	1 cut(s)	1240
SsiI	CCGC	5 cut(s)	81, 972, 1022, 1180, 1231
SspI	AATATT	2 cut(s)	298, 1246
SspMI	CTAG	2 cut(s)	515, 714
StuI	AGGCCT	1 cut(s)	1240
StyD4I	CCNGG	1 cut(s)	974
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	547
TasI	AATT	6 cut(s)	197, 285, 383, 677, 694, 795
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	8 cut(s)	29, 434, 673, 890, 921, 947, 1044, 1209
Tru1I	TTAA	7 cut(s)	53, 60, 357, 705, 749, 846, 1227
Tru9I	TTAA	7 cut(s)	53, 60, 357, 705, 749, 846, 1227
TscAI	CASTG	3 cut(s)	27, 237, 900
TseI	GCWGC	3 cut(s)	151, 327, 968
TspDTI	ATGAA	5 cut(s)	31, 395, 624, 686, 916
TspGWI	ACGGA	1 cut(s)	643
TspRI	CASTG	3 cut(s)	27, 237, 900
Vha464I	CTTAAG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	786
XapI	RAATTY	3 cut(s)	285, 383, 795
XceI	RCATGY	1 cut(s)	805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	515, 714
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.