Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008877

Physical Location & Seq

Genomic Coordinates Reverse (-)

14371603 .. 14375467

Gene Structure 3865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3222 bp

ATGTACCTGCAGCCAAACAGTACCAATGGTGATGAGGCCTCTGAGGGCATCAGCAACTCGACACTTGCTACTGATCTTATAATTCAAACAGTTAGTAGTTGTGTCCAATATAAGCAGAGCCGCTGGCATAAATACTTTGCTATTGTGGTTTTCATCTGGCGCTCCAGAACCAAGCCACGCCTCCGCAGAGCAAAAGCCCCTCATCATCTAAGGTTTCTGAACAAGGTTGTTCGCCTTGATGTGAGACAGAAGGTCTCACACCTCGCGTCCTACTTCAAGGATCGTGCTGCCTATATCCCTTTGTTAGCACCAACAACACCAACAACGCCGCCAGCCGCTGCCTCAAATCATGTGATTGACATCCCTCTCCAAGATCTGAAAGAGGTTGCTCGCATTGTGAGAGTGAAGGACTTGAATGCACTGCGAGCACGCGGTGGTGTTGATGGTGTTTCACCACTTCTCAGGTCTCACTCTGAGGATCATGCTGATGATGGTGGTCAAGTTCCACAACTAGCATGCAACCCTGCCAAGCCTGTTTTCTTTCACTTCTTCTTGAAGGCTTGCAATCAGTACACAATCTTTTTCCTCTTGAGCTCAGCGGGTTTGCAATTTGCTATTGAATTCATGAAGCAAGGAGTCAAACAAGGGTGGCATGACGGTGTTGCCATACTTGTTACTGTGTTCCTACTCGTTGCTTTCCCTTCAGTTGGGAACTATCGTAAAGAGAGGAAGATGGTGAAGCAGTTGATGGAGAGGAACAAATTTCTGGTGGATGTTGAAAGAAATGGAGAATCTAGGGCGGTTATGATATCTCATGTTTCGGTGGGTGATATAGTTCATTTGAAGAAGGGAGACCATGCTCCTGCTGATGGCTTGTTCATAGATCATGGTGCCGAAATGGTCTTGGATGAGGTATTGAGCCCCACAATTGATTTTGAAAACAACCCATTTGTGTTGTCTGGTTCAAAAGTTATTGAGGGCCAGGGTCGAATGATTGTGACATCTGTTGGTGTCGATACAGCTTTTGCAGAGATGCTGAGCTTGGTGACTGAGGATCCTAATCCAAATAGGAAAACTCTGTTACAAGCTTTGATGGACAAACCATATACTTATATGGAGTATCTCGCATGTTGTGTTTCAATTCTGATTGCTTTTGTGGTGCTAATACGGTTTCTAGTATTCAGGAAGCATGACAACTATAATGACAGGCCAGACCTGAAAGGGGAAGTTTCAATGAGCTTGCTGATGAAGATTTTCGAGAAAATTTACTTGAAAACTCAAGGAAGGGTCTCCACTTTAGCAAGTGTTCTTGCTACTGTGGTAATTGGGATACAACATGGAATGCCCACTGTGATTTCCCTTGCACTTTGTCAATGGAAGAAGAAGGTGGTCCAAAATGGGGCAGATCCTCGGAATCTTGCAGCTTGTGTCACCATGGGACTCATAACAGTCATCTGCATTGAAACAACTAGTGAGAAAATGTGTAACCAGATGGAGGTTATGGACTTTTGGATAGGTGATAAGGATTTAAGCAATGAAGTGGAGTCTGATCAAACTGAACAATTTGCTCTCAAAGGACTACGTCAAGAGATTTCTGCTACCCCAGCAAATGATTCGTTCATTTCTTCGATCAAGACCAGATGGGGCGTTACTGACATGGAGGTATTGGATCAGACATTTATAACTGTGGAAGAGAGAAAATTGAGTTCTGATGAGAAATGTAGTGGCATCCTAATGAGGAAAACAGAGAGCAGTGCACAAGATATGCAGCTGCATATGAGTGGAGATGCATCAACAATCTTAGACATGTGTTCACATTATAATGATAAGACTGGGGAAAGTCGTATTCTGGGAATTCAGAAGAGAGAGTTTAAGCAGGTCATTAAGAACATGGAGGAGAAGGGTCTTAGACCGATTGCATATGCTTACAAGAAAACAAATGTTCAAGAATTTACAGAAAATGGGTTGAAATTGTTGGCACTGGTGGGAGTCAGATGCCCATATCAAGAAGAGCTTAAAATTGCAGTGGAAGCTTTTAGAAAGGCCGGAATAAGAATCAAGCTGGTATCCGAGGATGAGCTCTCAAAAGTGACTGAGCAAGCTTCTGATCTTGGAATCTTTAACCCTGGTAGTGGTGATATGGAGATAGCAGGCGAAGCTTTCAGAAGACTCAACTCCATGGAAAGACCAAATAAGGTGGATTTGATATCCGTGATGGGAAATTCCCTCCCAAAGGACAAGCTTCTCATGGTGGAGCGCTTAAAGAAAAACGGTCACATAGTAGCGTTCTATGGAGGGTTAACCATAAACGATACTAGGACTTTGAAAGAAGCTGATGTTGGAATCACAGAGGATATATGGAGCACTGAGATGGCCAGAGACAATGCTGATATTATAGTTAAGGATGGCTGCTCATGGTTCCTGAACTTGAAGTCTGGGAAATGTGCTTACCACAACATTCAGAACTTCTGTCAAATTCAGCTCACGGCTTGCATATCTGGCTTGCTAGTAACGTTAGTAGCAACGATGCATTCAGGGGACTCTCCATTGACCGCAATTCACTTGATTTGGGTGAACTTGATAATGTGCCTTCTAGGCAGCCTAATGATGGTAATGGAGTTAGAACGCCAGGAGCCACTTGCTCAAGAACCAGCGCCAAGGACTCAAGAACCGGCGCCAAGGACTCAAGAACCGGCACGGACTCAGCCACTTGTAACCAAAGCCATCTGGGGAAACATAGCCATTCAAGTTTCATACCAGGCTTCCATCTTGCTGGTCTTGCATTTCATGGGAAATGCAATAGCGAGCATGAACCAAGGCATCCGGGGTACCATGGTTTTCAATATTTACACCTTATGTCAGGTCCTTAATCTGTTCAGGGCCATGGACCTAGTGAACAAGGAAGTGCTAAATGTTGTTCTTCACAGCTATTGGTTTTTGATGGCCTTGGGGGCTGTTATGGTCATGCAGGTGGTGATTGTTGAGTTTGGGAAAGGACTAGCCAGTGGTGTGAGGTTGGATGCAATACATTGGGCATCCTGCTTCCTTCTTTCTGCTCTTTCATGGCCGTTTGATTGGGCCATAACTTCGCAGTTTCGAAGAGAAAATTTGGCATGGAGGAGAGCACCTATGGGGATGTCAAGATTTTACATTTGCGCTTCGTTGTTCCTCATTTTCTCTGTATCATATTGTTTCGAATCAGATTATGCACACACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

1073

Amino Acids

120.2

Weight (kDa)

7.94

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	257 - 349	1.5e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	533 - 669	1.8e-10	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	848 - 1027	2.1e-17	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g40950 FvH4_6g40950
malus_domestica	MD09G1122600.v1.1 MD09G1122800.v1.1 MD17G1113500.v1.1
prunus_persica	Prupe.3G200900_v2.0.a1
pyrus_communis	pycom09g04700 pycom09g04710 pycom17g10510
rosa_chinensis	RchiOBHm_Chr2g0156561 RchiOBHm_Chr2g0156581
rosa_laevigata	RLG00000020921
rosa_multiflora	Rmu_sc0011512.1_g000006
rosa_roxburghii	Rroxscaffold_2G00092940
rosa_rugosa	Rorug02G0454300
rosa_samantha	Rh2AG520100 Rh2BG532600 Rh2BG533100 Rh2CG505100 Rh2DG541500 Rh2DG541900
rosa_wichuraiana	Rw2G042880 Rw2G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	80, 1682, 1821
AarI	CACCTGC	1 cut(s)	2959
Acc36I	ACCTGC	3 cut(s)	15, 1867, 2959
Acc65I	GGTACC	1 cut(s)	2828
AccB1I	GGYRCC	3 cut(s)	890, 2674, 2828
AccII	CGCG	2 cut(s)	266, 432
AciI	CCGC	8 cut(s)	121, 184, 329, 336, 432, 599, 800, 2553
AclI	AACGTT	1 cut(s)	2513
AclWI	GGATC	6 cut(s)	288, 486, 1049, 1062, 1400, 1677
AcoI	YGGCCR	2 cut(s)	2373, 3065
AcsI	RAATTY	8 cut(s)	620, 761, 1263, 1854, 1949, 2221, 2475, 3106
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	2675
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	4 cut(s)	5, 22, 572, 2830
AfeI	AGCGCT	1 cut(s)	2258
AfiI	CCNNNNNNNGG	8 cut(s)	707, 869, 1222, 1399, 1495, 2132, 2233, 2608
AflIII	ACRYGT	1 cut(s)	1806
AhdI	GACNNNNNGTC	1 cut(s)	251
AhlI	ACTAGT	1 cut(s)	1469
AjnI	CCWGG	4 cut(s)	981, 2125, 2628, 2757
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 2322, 2354
Alw21I	GWGCWC	6 cut(s)	430, 596, 1759, 2082, 2366, 3127
Alw26I	GTCTC	6 cut(s)	238, 259, 471, 846, 1294, 2373
Alw44I	GTGCAC	1 cut(s)	1755
AlwI	GGATC	6 cut(s)	288, 486, 1049, 1062, 1400, 1677
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor51HI	AGCGCT	1 cut(s)	2258
AoxI	GGCC	9 cut(s)	36, 979, 1208, 2043, 2373, 2880, 2943, 3065, 3078
ApaLI	GTGCAC	1 cut(s)	1755
ApeKI	GCWGC	8 cut(s)	10, 287, 338, 1421, 1768, 1771, 2409, 2598
ApoI	RAATTY	8 cut(s)	620, 761, 1263, 1854, 1949, 2221, 2475, 3106
Asp700I	GAANNNNTTC	1 cut(s)	1253
Asp718I	GGTACC	1 cut(s)	2828
AspLEI	GCGC	5 cut(s)	162, 2259, 2656, 2677, 3158
AspS9I	GGNCC	6 cut(s)	979, 1390, 2863, 2880, 2887, 3078
AsuC2I	CCSGG	1 cut(s)	2825
AsuII	TTCGAA	2 cut(s)	3097, 3195
AvaII	GGWCC	3 cut(s)	1390, 2863, 2887
BaeGI	GKGCMC	1 cut(s)	1759
BaeI	ACNNNNGTAYC	2 cut(s)	2820, 2853
BalI	TGGCCA	1 cut(s)	2375
BamHI	GGATCC	1 cut(s)	1054
BanI	GGYRCC	3 cut(s)	890, 2674, 2828
BanII	GRGCYC	3 cut(s)	596, 923, 2082
BbsI	GAAGAC	1 cut(s)	2173
Bbv12I	GWGCWC	6 cut(s)	430, 596, 1759, 2082, 2366, 3127
BbvI	GCAGC	8 cut(s)	22, 274, 325, 1433, 1758, 1780, 2396, 2610
BceAI	ACGGC	2 cut(s)	2502, 3052
BcgI	CGANNNNNNTGC	2 cut(s)	1596, 1630
BciT130I	CCWGG	4 cut(s)	983, 2127, 2630, 2759
BciVI	GTATCC	2 cut(s)	1323, 2077
BclI	TGATCA	1 cut(s)	1549
BcnI	CCSGG	1 cut(s)	2825
BcoDI	GTCTC	6 cut(s)	238, 259, 471, 846, 1294, 2373
BcuI	ACTAGT	1 cut(s)	1469
BfaI	CTAG	9 cut(s)	512, 795, 1175, 1470, 2316, 2507, 2594, 2891, 2999
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	4 cut(s)	163, 2260, 2657, 2678
BfuAI	ACCTGC	3 cut(s)	15, 1867, 2959
BfuI	GTATCC	2 cut(s)	1323, 2077
BglI	GCCNNNNNGGC	2 cut(s)	2595, 2951
BglII	AGATCT	1 cut(s)	373
BlpI	GCTNAGC	2 cut(s)	595, 1037
Bme1390I	CCNGG	5 cut(s)	983, 2127, 2630, 2759, 2825
Bme18I	GGWCC	3 cut(s)	1390, 2863, 2887
BmeRI	GACNNNNNGTC	1 cut(s)	251
BmgT120I	GGNCC	6 cut(s)	979, 1390, 2863, 2880, 2887, 3078
BmiI	GGNNCC	6 cut(s)	892, 1056, 2420, 2634, 2676, 2830
BmrFI	CCNGG	5 cut(s)	983, 2127, 2630, 2759, 2825
BmrI	ACTGGG	1 cut(s)	1842
BmuI	ACTGGG	1 cut(s)	1842
BpiI	GAAGAC	1 cut(s)	2173
BpmI	CTGGAG	1 cut(s)	148
Bpu1102I	GCTNAGC	2 cut(s)	595, 1037
Bpu14I	TTCGAA	2 cut(s)	3097, 3195
BpuEI	CTTGAG	5 cut(s)	610, 1263, 2628, 2649, 2670
BpuMI	CCSGG	1 cut(s)	2825
BsaBI	GATNNNNATC	2 cut(s)	359, 1059
BsaHI	GRCGYC	1 cut(s)	2675
BsaI	GGTCTC	4 cut(s)	259, 471, 846, 1294
Bsc4I	CCNNNNNNNGG	8 cut(s)	707, 869, 1222, 1399, 1495, 2132, 2233, 2608
Bse118I	RCCGGY	2 cut(s)	2671, 2692
Bse1I	ACTGG	3 cut(s)	1837, 1986, 3003
Bse3DI	GCAATG	1 cut(s)	1540
Bse8I	GATNNNNATC	2 cut(s)	359, 1059
BseBI	CCWGG	4 cut(s)	983, 2127, 2630, 2759
BseJI	GATNNNNATC	2 cut(s)	359, 1059
BseLI	CCNNNNNNNGG	8 cut(s)	707, 869, 1222, 1399, 1495, 2132, 2233, 2608
BseMI	GCAATG	1 cut(s)	1540
BseMII	CTCAG	9 cut(s)	33, 465, 475, 609, 1028, 1041, 2085, 2358, 2717
BseNI	ACTGG	3 cut(s)	1837, 1986, 3003
BseRI	GAGGAG	2 cut(s)	1910, 3133
BseSI	GKGCMC	1 cut(s)	1759
BseXI	GCAGC	8 cut(s)	22, 274, 325, 1433, 1758, 1780, 2396, 2610
BseYI	CCCAGC	1 cut(s)	1603
Bsh1236I	CGCG	2 cut(s)	266, 432
BshFI	GGCC	9 cut(s)	38, 981, 1210, 2045, 2375, 2882, 2945, 3067, 3080
BshNI	GGYRCC	3 cut(s)	890, 2674, 2828
BsiHKAI	GWGCWC	6 cut(s)	430, 596, 1759, 2082, 2366, 3127
BsiSI	CCGG	4 cut(s)	2046, 2672, 2693, 2824
BslFI	GGGAC	2 cut(s)	1452, 2552
BslI	CCNNNNNNNGG	8 cut(s)	707, 869, 1222, 1399, 1495, 2132, 2233, 2608
BsmAI	GTCTC	6 cut(s)	238, 259, 471, 846, 1294, 2373
BsmFI	GGGAC	2 cut(s)	1452, 2552
BsmI	GAATGC	3 cut(s)	421, 1347, 2530
BsnI	GGCC	9 cut(s)	38, 981, 1210, 2045, 2375, 2882, 2945, 3067, 3080
Bso31I	GGTCTC	4 cut(s)	259, 471, 846, 1294
Bsp119I	TTCGAA	2 cut(s)	3097, 3195
Bsp1286I	GDGCHC	7 cut(s)	430, 596, 923, 1759, 2082, 2366, 3127
Bsp1720I	GCTNAGC	2 cut(s)	595, 1037
Bsp19I	CCATGG	4 cut(s)	1434, 2178, 2832, 2883
BspACI	CCGC	8 cut(s)	121, 184, 329, 336, 432, 599, 800, 2553
BspANI	GGCC	9 cut(s)	38, 981, 1210, 2045, 2375, 2882, 2945, 3067, 3080
BspCNI	CTCAG	9 cut(s)	34, 466, 474, 608, 1029, 1042, 2086, 2359, 2716
BspFNI	CGCG	2 cut(s)	266, 432
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	6 cut(s)	892, 1056, 2420, 2634, 2676, 2830
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	3 cut(s)	15, 1867, 2959
BspPI	GGATC	6 cut(s)	288, 486, 1049, 1062, 1400, 1677
BspQI	GCTCTTC	1 cut(s)	2004
BspT104I	TTCGAA	2 cut(s)	3097, 3195
BspT107I	GGYRCC	3 cut(s)	890, 2674, 2828
BspTNI	GGTCTC	4 cut(s)	259, 471, 846, 1294
BsrDI	GCAATG	1 cut(s)	1540
BsrFI	RCCGGY	2 cut(s)	2671, 2692
BsrI	ACTGG	3 cut(s)	1837, 1986, 3003
BssAI	RCCGGY	2 cut(s)	2671, 2692
BssNI	GRCGYC	1 cut(s)	2675
BssT1I	CCWWGG	8 cut(s)	1434, 2178, 2657, 2678, 2815, 2832, 2883, 2946
Bst2UI	CCWGG	4 cut(s)	983, 2127, 2630, 2759
Bst6I	CTCTTC	4 cut(s)	1686, 1856, 2004, 3094
BstACI	GRCGYC	1 cut(s)	2675
BstBI	TTCGAA	2 cut(s)	3097, 3195
BstDSI	CCRYGG	4 cut(s)	1434, 2178, 2832, 2883
BstENI	CCTNNNNNAGG	1 cut(s)	2231
BstFNI	CGCG	2 cut(s)	266, 432
BstH2I	RGCGCY	4 cut(s)	163, 2260, 2657, 2678
BstHHI	GCGC	5 cut(s)	162, 2259, 2656, 2677, 3158
BstMAI	GTCTC	6 cut(s)	238, 259, 471, 846, 1294, 2373
BstMWI	GCNNNNNNNGC	8 cut(s)	425, 1604, 2030, 2156, 2499, 2595, 2779, 2951
BstNI	CCWGG	4 cut(s)	983, 2127, 2630, 2759
BstNSI	RCATGY	3 cut(s)	519, 1131, 1810
BstSCI	CCNGG	5 cut(s)	981, 2125, 2628, 2757, 2823
BstSFI	CTRYAG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	1759
BstUI	CGCG	2 cut(s)	266, 432
BstV1I	GCAGC	8 cut(s)	22, 274, 325, 1433, 1758, 1780, 2396, 2610
BstV2I	GAAGAC	1 cut(s)	2173
BstX2I	RGATCY	3 cut(s)	373, 1054, 1405
BstXI	CCANNNNNNTGG	1 cut(s)	2773
BstYI	RGATCY	3 cut(s)	373, 1054, 1405
BsuI	GTATCC	2 cut(s)	1323, 2077
BsuRI	GGCC	9 cut(s)	38, 981, 1210, 2045, 2375, 2882, 2945, 3067, 3080
BtgI	CCRYGG	4 cut(s)	1434, 2178, 2832, 2883
BtsI	GCAGTG	3 cut(s)	419, 1759, 2031
BtsIMutI	CAGTG	7 cut(s)	419, 1347, 1759, 1979, 2031, 2364, 3010
BveI	ACCTGC	3 cut(s)	15, 1867, 2959
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	5 cut(s)	162, 2259, 2656, 2677, 3158
Cfr10I	RCCGGY	2 cut(s)	2671, 2692
Cfr13I	GGNCC	6 cut(s)	979, 1390, 2863, 2880, 2887, 3078
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	4 cut(s)	4, 21, 571, 2829
CspCI	CAANNNNNGTGG	2 cut(s)	2178, 2213
CviQI	GTAC	4 cut(s)	4, 21, 571, 2829
DinI	GGCGCC	1 cut(s)	2676
DraIII	CACNNNGTG	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	2373, 3065
Eam1104I	CTCTTC	4 cut(s)	1686, 1856, 2004, 3094
Eam1105I	GACNNNNNGTC	1 cut(s)	251
EarI	CTCTTC	4 cut(s)	1686, 1856, 2004, 3094
Ecl136II	GAGCTC	2 cut(s)	594, 2080
Eco130I	CCWWGG	8 cut(s)	1434, 2178, 2657, 2678, 2815, 2832, 2883, 2946
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	3 cut(s)	596, 923, 2082
Eco31I	GGTCTC	4 cut(s)	259, 471, 846, 1294
Eco32I	GATATC	2 cut(s)	810, 2208
Eco47I	GGWCC	3 cut(s)	1390, 2863, 2887
Eco47III	AGCGCT	1 cut(s)	2258
Eco53kI	GAGCTC	2 cut(s)	594, 2080
Eco57I	CTGAAG	1 cut(s)	687
EcoICRI	GAGCTC	2 cut(s)	594, 2080
EcoNI	CCTNNNNNAGG	1 cut(s)	2231
EcoO109I	RGGNCCY	1 cut(s)	2863
EcoRI	GAATTC	2 cut(s)	620, 1854
EcoRII	CCWGG	4 cut(s)	981, 2125, 2628, 2757
EcoRV	GATATC	2 cut(s)	810, 2208
EcoT14I	CCWWGG	8 cut(s)	1434, 2178, 2657, 2678, 2815, 2832, 2883, 2946
EcoT22I	ATGCAT	2 cut(s)	1792, 2532
EcoT38I	GRGCYC	3 cut(s)	596, 923, 2082
EgeI	GGCGCC	1 cut(s)	2676
EheI	GGCGCC	1 cut(s)	2676
ErhI	CCWWGG	8 cut(s)	1434, 2178, 2657, 2678, 2815, 2832, 2883, 2946
FalI	AAGNNNNNCTT	2 cut(s)	1998, 2030
FaqI	GGGAC	2 cut(s)	1452, 2552
FauI	CCCGC	1 cut(s)	592
FauNDI	CATATG	2 cut(s)	1776, 1921
FbaI	TGATCA	1 cut(s)	1549
FriOI	GRGCYC	3 cut(s)	596, 923, 2082
FspBI	CTAG	9 cut(s)	512, 795, 1175, 1470, 2316, 2507, 2594, 2891, 2999
GlaI	GCGC	5 cut(s)	161, 2258, 2655, 2676, 3157
GsaI	CCCAGC	1 cut(s)	1607
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	4 cut(s)	163, 2260, 2657, 2678
HaeIII	GGCC	9 cut(s)	38, 981, 1210, 2045, 2375, 2882, 2945, 3067, 3080
HapII	CCGG	4 cut(s)	2046, 2672, 2693, 2824
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	5 cut(s)	162, 2259, 2656, 2677, 3158
Hin1I	GRCGYC	1 cut(s)	2675
Hin6I	GCGC	5 cut(s)	160, 2257, 2654, 2675, 3156
HinP1I	GCGC	5 cut(s)	160, 2257, 2654, 2675, 3156
HincII	GTYRAC	1 cut(s)	2301
HindII	GTYRAC	1 cut(s)	2301
HindIII	AAGCTT	5 cut(s)	1086, 2031, 2100, 2157, 2240
HpaI	GTTAAC	1 cut(s)	2301
HpaII	CCGG	4 cut(s)	2046, 2672, 2693, 2824
Hpy166II	GTNNAC	6 cut(s)	573, 1757, 1814, 2301, 2575, 2896
Hpy8I	GTNNAC	6 cut(s)	573, 1757, 1814, 2301, 2575, 2896
HpyCH4IV	ACGT	2 cut(s)	1582, 2513
HpyF10VI	GCNNNNNNNGC	8 cut(s)	425, 1604, 2030, 2156, 2499, 2595, 2779, 2951
HpySE526I	ACGT	2 cut(s)	1582, 2513
Hsp92I	GRCGYC	1 cut(s)	2675
HspAI	GCGC	5 cut(s)	160, 2257, 2654, 2675, 3156
KasI	GGCGCC	1 cut(s)	2674
KpnI	GGTACC	1 cut(s)	2832
Ksp22I	TGATCA	1 cut(s)	1549
KspAI	GTTAAC	1 cut(s)	2301
LguI	GCTCTTC	1 cut(s)	2004
LmnI	GCTCC	5 cut(s)	167, 865, 2254, 2361, 2632
Lsp1109I	GCAGC	8 cut(s)	22, 274, 325, 1433, 1758, 1780, 2396, 2610
MaeI	CTAG	9 cut(s)	512, 795, 1175, 1470, 2316, 2507, 2594, 2891, 2999
MaeII	ACGT	2 cut(s)	1582, 2513
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	3 cut(s)	373, 1054, 1405
MhlI	GDGCHC	7 cut(s)	430, 596, 923, 1759, 2082, 2366, 3127
MlsI	TGGCCA	1 cut(s)	2375
MluNI	TGGCCA	1 cut(s)	2375
Mly113I	GGCGCC	1 cut(s)	2675
MlyI	GAGTC	9 cut(s)	645, 1434, 1553, 1998, 2163, 2534, 2656, 2677, 2695
MmeI	TCCRAC	2 cut(s)	2320, 2997
Mox20I	TGGCCA	1 cut(s)	2375
Mph1103I	ATGCAT	2 cut(s)	1792, 2532
MroXI	GAANNNNTTC	1 cut(s)	1253
MscI	TGGCCA	1 cut(s)	2375
MseI	TTAA	9 cut(s)	1529, 1872, 1884, 2016, 2121, 2261, 2300, 2400, 2868
MslI	CAYNNNNRTG	7 cut(s)	486, 657, 1733, 1779, 1821, 2369, 2969
Msp20I	TGGCCA	1 cut(s)	2375
MspA1I	CMGCKG	4 cut(s)	123, 338, 599, 1771
MspI	CCGG	4 cut(s)	2046, 2672, 2693, 2824
MspR9I	CCNGG	5 cut(s)	983, 2127, 2630, 2759, 2825
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	3 cut(s)	421, 1347, 2530
MvaI	CCWGG	4 cut(s)	983, 2127, 2630, 2759
MvnI	CGCG	2 cut(s)	266, 432
MwoI	GCNNNNNNNGC	8 cut(s)	425, 1604, 2030, 2156, 2499, 2595, 2779, 2951
NarI	GGCGCC	1 cut(s)	2675
NciI	CCSGG	1 cut(s)	2825
NcoI	CCATGG	4 cut(s)	1434, 2178, 2832, 2883
NdeI	CATATG	2 cut(s)	1776, 1921
NlaIV	GGNNCC	6 cut(s)	892, 1056, 2420, 2634, 2676, 2830
NmuCI	GTSAC	5 cut(s)	997, 1045, 1429, 2089, 2273
NsiI	ATGCAT	2 cut(s)	1792, 2532
NspI	RCATGY	3 cut(s)	519, 1131, 1810
NspV	TTCGAA	2 cut(s)	3097, 3195
PaeI	GCATGC	1 cut(s)	519
PagI	TCATGA	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	2959
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	1806
PciSI	GCTCTTC	1 cut(s)	2004
PctI	GAATGC	3 cut(s)	421, 1347, 2530
PdmI	GAANNNNTTC	1 cut(s)	1253
PfeI	GAWTC	7 cut(s)	791, 1414, 1613, 2055, 2115, 2343, 3197
PflFI	GACNNNGTC	1 cut(s)	1581
PleI	GAGTC	9 cut(s)	644, 1434, 1552, 1997, 2163, 2534, 2656, 2677, 2695
PluTI	GGCGCC	1 cut(s)	2678
PpsI	GAGTC	9 cut(s)	644, 1434, 1552, 1997, 2163, 2534, 2656, 2677, 2695
PpuMI	RGGWCCY	1 cut(s)	2863
PscI	ACATGT	1 cut(s)	1806
PsiI	TTATAA	3 cut(s)	80, 1682, 1821
Psp124BI	GAGCTC	2 cut(s)	596, 2082
Psp1406I	AACGTT	1 cut(s)	2513
Psp5II	RGGWCCY	1 cut(s)	2863
Psp6I	CCWGG	4 cut(s)	981, 2125, 2628, 2757
PspFI	CCCAGC	1 cut(s)	1603
PspGI	CCWGG	4 cut(s)	981, 2125, 2628, 2757
PspN4I	GGNNCC	6 cut(s)	892, 1056, 2420, 2634, 2676, 2830
PspPI	GGNCC	6 cut(s)	979, 1390, 2863, 2880, 2887, 3078
PspPPI	RGGWCCY	1 cut(s)	2863
PstI	CTGCAG	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	373, 1054, 1405
PsyI	GACNNNGTC	1 cut(s)	1581
PvuII	CAGCTG	1 cut(s)	1771
RsaI	GTAC	4 cut(s)	5, 22, 572, 2830
RsaNI	GTAC	4 cut(s)	4, 21, 571, 2829
RseI	CAYNNNNRTG	7 cut(s)	486, 657, 1733, 1779, 1821, 2369, 2969
SacI	GAGCTC	2 cut(s)	596, 2082
SapI	GCTCTTC	1 cut(s)	2004
SaqAI	TTAA	9 cut(s)	1529, 1872, 1884, 2016, 2121, 2261, 2300, 2400, 2868
Sau96I	GGNCC	6 cut(s)	979, 1390, 2863, 2880, 2887, 3078
SchI	GAGTC	9 cut(s)	645, 1434, 1553, 1998, 2163, 2534, 2656, 2677, 2695
ScrFI	CCNGG	5 cut(s)	983, 2127, 2630, 2759, 2825
SduI	GDGCHC	7 cut(s)	430, 596, 923, 1759, 2082, 2366, 3127
SfcI	CTRYAG	1 cut(s)	8
SfoI	GGCGCC	1 cut(s)	2676
SfuI	TTCGAA	2 cut(s)	3097, 3195
SinI	GGWCC	3 cut(s)	1390, 2863, 2887
SmiMI	CAYNNNNRTG	7 cut(s)	486, 657, 1733, 1779, 1821, 2369, 2969
SmlI	CTYRAG	5 cut(s)	589, 1278, 2643, 2664, 2685
SmoI	CTYRAG	5 cut(s)	589, 1278, 2643, 2664, 2685
SpeI	ACTAGT	1 cut(s)	1469
SphI	GCATGC	1 cut(s)	519
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	8 cut(s)	121, 184, 329, 336, 432, 599, 800, 2553
SspDI	GGCGCC	1 cut(s)	2674
SspI	AATATT	1 cut(s)	2845
SspMI	CTAG	9 cut(s)	512, 795, 1175, 1470, 2316, 2507, 2594, 2891, 2999
SstI	GAGCTC	2 cut(s)	596, 2082
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	5 cut(s)	981, 2125, 2628, 2757, 2823
StyI	CCWWGG	8 cut(s)	1434, 2178, 2657, 2678, 2815, 2832, 2883, 2946
TaiI	ACGT	2 cut(s)	1585, 2516
TaqI	TCGA	7 cut(s)	59, 988, 1014, 1257, 1628, 3097, 3195
TaqII	GACCGA	1 cut(s)	1927
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	3 cut(s)	123, 331, 338
TfiI	GAWTC	7 cut(s)	791, 1414, 1613, 2055, 2115, 2343, 3197
Tru1I	TTAA	9 cut(s)	1529, 1872, 1884, 2016, 2121, 2261, 2300, 2400, 2868
Tru9I	TTAA	9 cut(s)	1529, 1872, 1884, 2016, 2121, 2261, 2300, 2400, 2868
TscAI	CASTG	7 cut(s)	426, 1354, 1759, 1986, 2031, 2371, 3010
TseFI	GTSAC	5 cut(s)	997, 1045, 1429, 2089, 2273
TseI	GCWGC	8 cut(s)	10, 287, 338, 1421, 1768, 1771, 2409, 2598
Tsp45I	GTSAC	5 cut(s)	997, 1045, 1429, 2089, 2273
TspGWI	ACGGA	2 cut(s)	2200, 2713
TspRI	CASTG	7 cut(s)	426, 1354, 1759, 1986, 2031, 2371, 3010
Tth111I	GACNNNGTC	1 cut(s)	1581
VneI	GTGCAC	1 cut(s)	1755
VpaK11BI	GGWCC	3 cut(s)	1390, 2863, 2887
XagI	CCTNNNNNAGG	1 cut(s)	2231
XapI	RAATTY	8 cut(s)	620, 761, 1263, 1854, 1949, 2221, 2475, 3106
XceI	RCATGY	3 cut(s)	519, 1131, 1810
XmnI	GAANNNNTTC	1 cut(s)	1253
XspI	CTAG	9 cut(s)	512, 795, 1175, 1470, 2316, 2507, 2594, 2891, 2999
Zsp2I	ATGCAT	2 cut(s)	1792, 2532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.